[Blends-commit] [Git][blends-team/med][master] Add missing packages that are in testing

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Blends Team / med


Commits:
51eebd64 by Andreas Tille at 2021-03-29T21:27:27+02:00
Add missing packages that are in testing

- - - - -


6 changed files:

- tasks/bio
- tasks/bio-dev
- tasks/covid-19
- tasks/epi
- tasks/imaging
- tasks/imaging-dev


Changes:

=====================================
tasks/bio
=====================================
@@ -457,6 +457,8 @@ Recommends: bedops
 Recommends: biceps
 Remark: Mentioned at http://www.renard.it/, developed in RKI
 
+Recommends: bio-vcf
+
 Recommends: cnvkit
 
 Recommends: csb
@@ -1547,6 +1549,8 @@ Recommends: umap-learn
 
 Recommends: umis
 
+Recommends: uncalled
+
 Recommends: unicycler
 
 Recommends: varna


=====================================
tasks/bio-dev
=====================================
@@ -14,7 +14,7 @@ X-Importance: Clustering of graphs
 
 Recommends: biosquid
 
-Recommends: cwltool, snakemake
+Recommends: cwltool, snakemake, python3-wdlparse
 
 Suggests: cwlformat
 
@@ -71,7 +71,9 @@ Recommends: libbio-graphics-perl, libbio-coordinate-perl
 
 Recommends: libbio-primerdesigner-perl
 
-Recommends: libbio-alignio-stockholm-perl, libbio-cluster-perl, libbio-db-hts-perl, libbio-featureio-perl, libbio-tools-run-remoteblast-perl
+Recommends: libbio-alignio-stockholm-perl, libbio-cluster-perl,
+            libbio-db-biofetch-perl, libbio-db-embl-perl, libbio-db-hts-perl, libbio-db-ncbihelper-perl,
+            libbio-featureio-perl, libbio-tools-run-remoteblast-perl, libbio-variation-perl
 
 Recommends: libace-perl
 
@@ -101,6 +103,8 @@ Recommends: libchado-perl
 
 Recommends: libpal-java
 
+Recommends: libpdb-redo-dev
+
 Recommends: libbioparser-dev, libspoa-dev, libedlib-dev, libthread-pool-dev
 
 Recommends: libjebl2-java


=====================================
tasks/covid-19
=====================================
@@ -578,6 +578,8 @@ Recommends: tnseq-transit
 
 Recommends: toil
 
+Recommends: uncalled
+
 Recommends: umis
 
 Recommends: workrave


=====================================
tasks/epi
=====================================
@@ -48,6 +48,8 @@ Recommends: python3-seirsplus
 
 Recommends: chime
 
+Suggests: python3-epimodels
+
 Recommends: netepi-analysis
 Remark: See also: http://www.stockholmchallenge.se/data/2123 and
  http://www.publish.csiro.au/?act=view_file&file_id=NB07103.pdf


=====================================
tasks/imaging
=====================================
@@ -48,8 +48,7 @@ Recommends: python3-nipy
 Why: Although listed in -dev task, it also has a strong focus on interactive
  data analysis.
 
-Suggests: python-nipype
-Comment: py2removal
+Recommends: python3-nipype
 Why: Although listed in -dev task, it also has a strong focus on interactive
  data analysis.
 
@@ -835,7 +834,7 @@ Vcs-Browser: https://github.com/INCF/one_click
 
 Recommends: vrrender
 
-Recommends: bart
+Recommends: bart, bart-cuda
 
 Recommends: bart-view
 WNPP: 851431


=====================================
tasks/imaging-dev
=====================================
@@ -35,8 +35,7 @@ Why: Suggested by maintainer Michael Hanke <michael.hanke at gmail.com>
 
 Recommends: python3-nipy
 
-Suggests: python-nipype
-Comment: py2removal
+Recommends: python3-nipype
 
 Recommends: python3-nitime
 
@@ -81,6 +80,8 @@ Recommends: libopenmeeg-dev
 
 Recommends: python3-nibabel
 
+Recommends: python3-brian
+
 Recommends: libgdf-dev, octave-gdf
 
  ; Added by blends-inject 0.0.6. [Please note here if modified manually]
@@ -132,8 +133,7 @@ Comment: py2removal
 
 Recommends: libvigraimpex-dev
 
-Suggests: python-vigra
-Comment: py2removal
+Recommends: python3-vigra
 
 Recommends: libvtk-dicom-dev
 



View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/51eebd643762cda30a82f382c9e537fc02c4b39d

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