[Blends-commit] [Git][blends-team/science][master] 3 commits: Re-render metapackages according the package pool in bullseye

Andreas Tille (@tille) gitlab at salsa.debian.org
Tue May 11 13:54:31 BST 2021



Andreas Tille pushed to branch master at Debian Blends Team / science


Commits:
5a4fed82 by Andreas Tille at 2021-05-10T15:16:15+02:00
Re-render metapackages according the package pool in bullseye

- - - - -
55e6c597 by Andreas Tille at 2021-05-10T15:27:10+02:00
Generate automatic changelog

- - - - -
da124f2d by Andreas Tille at 2021-05-10T15:44:44+02:00
Upload to unstable

- - - - -


4 changed files:

- debian/changelog
- debian/control
- + dependency_data/debian-science_1.14.1.json
- + dependency_data/debian-science_1.14.2.json


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,23 @@
+debian-science (1.14.2) unstable; urgency=medium
+
+  * Re-render metapackages according the package pool in bullseye
+
+  * start of automatic changelog entry * 
+  
+  * Changes in metapackage dependencies
+   -science-dataacquisition-dev
+    added:
+      Recommends:  libopenrefine-vicino-java, libopenrefine-arithcode-java
+   -science-simulations
+    added:
+      Recommends:  pysph-viewer
+   -science-workflow
+    added:
+      Recommends:  python3-nipype, python3-wdlparse
+      Suggests:  cwlformat
+
+ -- Andreas Tille <tille at debian.org>  Mon, 10 May 2021 15:27:28 +0200
+
 debian-science (1.14.1) unstable; urgency=medium
 
   * Source-only upload


=====================================
debian/control
=====================================
@@ -230,7 +230,8 @@ Recommends: adun.app,
             tandem-mass,
             v-sim,
             xbs,
-            xdrawchem
+            xdrawchem,
+            xmakemol-gl | xmakemol
 Suggests: bkchem,
           fdmnes,
           gcu-plugin,
@@ -246,8 +247,7 @@ Suggests: bkchem,
           python-pymzml-doc,
           python3-periodictable,
           tinker,
-          viewmol,
-          xmakemol-gl | xmakemol
+          viewmol
 Description: Debian Science Chemistry packages
  This metapackage will install Debian Science packages related to
  Chemistry.  You might also be interested in the field::chemistry
@@ -317,12 +317,14 @@ Recommends: libgetdata-dev,
             python3-aws-xray-sdk,
             python3-csvkit,
             python3-guidata,
-            python3-intake,
             python3-pygetdata,
             python3-pymeasure,
             python3-segyio,
             python3-xrayutilities
 Suggests: libnarval1-dev,
+          libopenrefine-arithcode-java,
+          libopenrefine-vicino-java,
+          python3-intake,
           r-cran-mi,
           r-cran-ncdf4
 Description: Debian Science data acquisition development packages
@@ -351,6 +353,10 @@ Depends: ${misc:Depends},
          science-config (= ${source:Version}),
          science-tasks (= ${source:Version})
 Recommends: environment-modules,
+            gridengine-client,
+            gridengine-exec,
+            gridengine-master,
+            gridengine-qmon,
             ipython3,
             mpich,
             openmpi-bin,
@@ -358,10 +364,6 @@ Recommends: environment-modules,
 Suggests: coop-computing-tools,
           dmtcp,
           globus-core,
-          gridengine-client,
-          gridengine-exec,
-          gridengine-master,
-          gridengine-qmon,
           hpcc,
           htcondor,
           mpich2python,
@@ -1811,7 +1813,6 @@ Recommends: abinit-doc,
             libccp4-dev,
             libcexceptions-dev,
             libclipper-dev,
-            libcod-precision-perl,
             libetsf-io-dev,
             libetsf-io-doc,
             libfftw3-dev,
@@ -1843,6 +1844,7 @@ Suggests: gsl-doc-info,
           gsl-doc-pdf,
           gsl-ref-html | gsl-ref-psdoc,
           libcblas-dev,
+          libcod-precision-perl,
           libfeel++-dev,
           libfftw3-doc,
           libpspio-dev,
@@ -1964,7 +1966,6 @@ Recommends: admesh,
             coinor-symphony,
             esys-particle,
             gnudatalanguage,
-            iep,
             ipython3,
             julia,
             lammps,
@@ -2017,6 +2018,7 @@ Suggests: calculix-ccx-doc,
           freemat,
           geneva,
           hpcc,
+          iep,
           libarrayfire-unified-dev,
           libcblas-dev,
           libclblas-dev,
@@ -2749,6 +2751,8 @@ Recommends: coop-computing-tools,
             gearman,
             gearman-tools,
             make,
+            python3-nipype,
+            python3-wdlparse,
             snakemake,
             toil
 Suggests: cwlformat,


=====================================
dependency_data/debian-science_1.14.1.json
=====================================
@@ -0,0 +1 @@
+debian-science_1.14.json
\ No newline at end of file


=====================================
dependency_data/debian-science_1.14.2.json
=====================================
@@ -0,0 +1 @@
+{"geography": {"depends": [], "suggests": ["googleearth-package", "sumo", "libmseed-dev", "python3-pyepsg"], "recommends": ["gis-workstation", "grass", "qgis", "qgis-plugin-grass", "proj-bin", "mapserver-bin", "gmt", "gpsbabel", "gpx2shp", "gpsd", "gpsdrive", "gpsman", "earth3d", "openscenegraph", "drawmap", "gpstrans", "geoip-bin", "gpsd-clients", "grass-doc", "python3-mapscript", "phppgadmin", "gpsmanshp", "viking", "avce00", "e00compr", "gdal-bin", "ogdi-bin", "postgis", "osm2pgsql", "josm", "gosmore", "python3-mapnik", "mapnik-utils", "osmpbf-bin", "hyantesite", "r-cran-sp", "r-cran-maptools", "r-cran-mapdata", "r-cran-mapproj", "r-cran-maps", "r-cran-fields", "r-cran-raster", "pgadmin3", "openjump", "grace", "hydroffice.bag-tools", "python3-cartopy", "sac2mseed"], "ignore": [], "avoid": []}, "dataacquisition": {"depends": [], "suggests": ["gnudatalanguage", "comedi-source", "rtai", "xenomai-runtime", "linux-image-2.6-rt", "rt-tests", "gpsd", "binoculars", "python3-streamz", "tango-db", "tango-starter", "tango-accesscontrol", "python3-pytango", "python3-taurus", "hart"], "recommends": ["engauge-digitizer", "qtdmm", "g3data", "ktimetrace", "netcdf-bin", "libgetdata-tools", "jaaa", "ghkl", "narval-utils", "xyscan", "filo", "segyio-bin", "clickhouse-tools", "csvkit", "lxi-tools", "xlsx2csv", "python3-pyvisa", "mx-dataacquisition", "epics", "plot-digitizer", "libfreenect-dev", "opendap"], "ignore": [], "avoid": []}, "workflow": {"depends": [], "suggests": ["cwlformat", "libbenchmark-tools"], "recommends": ["make", "pegasus-wms", "snakemake", "cwltool", "coop-computing-tools", "python3-nipype", "gearman", "gearman-tools", "toil", "python3-wdlparse"], "ignore": [], "avoid": []}, "logic": {"depends": [], "suggests": ["coinor-libcoinmp-dev"], "recommends": ["agda", "coq", "hol-light", "hol88", "matita", "proofgeneral", "why", "why3", "depqbf", "picosat", "sat4j", "alt-ergo", "boolector", "cvc3", "cvc4", "z3", "prover9", "mace2", "maude", "spass", "coinor-cbc", "coinor-symphony", "minisat+", "clasp", "coala", "gringo", "lbt", "maria", "mona", "toulbar2"], "ignore": [], "avoid": []}, "meteorology": {"depends": [], "suggests": ["paraview", "geonetwork", "gnudatalanguage", "r-base", "octave-octcdf", "gerris", "python3-openturns"], "recommends": ["libemos-bin", "cdo", "nco", "dballe", "xygrib", "metview", "ncview", "grads", "ferret-vis", "cdftools", "fcm", "makedepf90", "flextra", "flexpart", "magics++", "cylc", "libeccodes-tools", "ecaccess", "ncl-ncarg", "harp", "python-cfgrib", "python3-cdo", "python3-netcdf4", "python3-grib", "python3-eccodes", "python3-drslib", "python3-metaconfig", "python3-gsw", "python3-iapws", "python3-gsw", "python3-iapws", "python3-cmor", "python3-ferret", "python3-sphere", "cmor-tables", "libdap-bin", "libdap-doc", "vistrails", "coda", "sasview", "gwyddion"], "ignore": [], "avoid": []}, "typesetting": {"depends": [], "suggests": ["tellico", "openoffice.org-dmaths", "r-cran-xtable", "r-cran-gridbase", "r-cran-highr", "r-cran-scatterd3", "r-cran-shape", "csv2latex", "libgtkmathview-bin", "svgtoipe", "xul-ext-zotero", "pymarc", "luasseq", "libqtexengine-dev"], "recommends": ["referencer", "kbibtex", "impose+", "pybliographer", "texlive-bibtex-extra", "jabref", "bibutils", "biber", "feynmf", "texlive", "texlive-science", "texlive-publishers", "texlive-math-extra", "diploma", "xfig", "transfig", "dia", "texmaker | kile | lyx | texmacs | auctex | vim-latexsuite | texstudio", "pandoc", "pandoc-citeproc", "r-cran-knitr", "bibus", "mlpost", "latexdiff", "libjlatexmath-java", "cb2bib", "jeuclid-mathviewer", "sketch", "ipe", "ipe5toxml", "quaneko", "gpapers", "zotero-standalone", "gummi", "sagetex", "pybtex", "python3-sphinxcontrib.bibtex", "python3-pybtex-docutils"], "ignore": [], "avoid": []}, "robotics": {"depends": [], "suggests": ["arduino-mk", "joint-state-publisher-gui", "ompl-demos", "libcoin-runtime", "vtk7", "octave", "gnuplot"], "recommends": ["rtai", "xenomai-runtime", "morse-simulator", "choreonoid", "liburdfdom-tools", "solid", "robot-player", "d-collide", "rtnet", "orca", "roboop", "orocos-rtt", "orocos-ocl", "ros-desktop-full", "ros-desktop", "ros-perception", "ros-simulators", "ros-robot", "ros-robot-state-publisher", "rosdiagnostic", "joint-state-publisher", "ros-opencv-apps", "openrtm", "openhrp", "gazebo9", "openrave", "octomap-tools", "octovis", "aseba"], "ignore": [], "avoid": []}, "engineering-dev": {"depends": [], "suggests": ["libgtkdatabox-dev", "libgtkdataboxmm-dev", "libqwt-dev | libqwt5-qt4-dev", "openturns-examples", "libdiet-sed2.8-dev", "libdiet-client2.8-dev", "libdiet-dagda2.8-dev", "libdiet-admin2.8-dev", "ceres-solver-doc"], "recommends": ["libalberta-dev", "code-saturne-bin", "code-saturne-include", "libcgns-dev", "libitpp-dev", "libadios-dev", "libbox-dev", "libsilo-dev", "libxdmf-dev", "libgetfem++-dev", "libhdf5-serial-dev", "libjhdf5-java", "libjhdf4-java", "libsis-jhdf5-java", "pycgns", "liboce-visualization-dev", "liboce-ocaf-dev", "libdeal.ii-dev", "libfeel++-dev", "libluminate-dev", "libopenturns-dev", "libmadlib-dev", "libtet1.4-dev", "libslepc3.4.2-dev", "libelmer-dev", "libug-dev", "libmed-dev", "libmedc-dev", "libmedimport-dev", "libnetcdf-dev", "python3-netcdf4", "r-cran-rnetcdf", "libnfft3-dev", "libnlopt-dev", "libcoin-dev", "libmetis-edf-dev", "libslicot-dev", "python3-collada", "libann-dev", "libflann-dev", "libdime-dev", "libdxflib-dev", "salome-kernel-dev", "python3-pynfft", "libplb-dev", "libceres-dev", "trilinos-all-dev", "libp4est-dev", "libgismo-dev", "python3-pygalmesh", "python3-fluids", "liblxi-dev", "python3-pyode"], "ignore": [], "avoid": []}, "highenergy-physics": {"depends": [], "suggests": ["paw-demos", "geant321-doc", "lhapdf-pdfsets-minimal", "root-system-doc"], "recommends": ["cernlib", "cernlib-base", "cernlib-core", "cernlib-extras", "dzedit", "kuipc", "kxterm", "nypatchy", "pawserv", "zftp", "paw", "paw++", "cernlib-montecarlo", "geant321", "feynmf", "looptools", "octave-lhapdf", "root-macro-fastjet", "pythia8-root-interface", "libroot-bindings-python5.34", "libroot-bindings-ruby5.34", "libroot-graf3d-gl5.34", "libroot-io-xmlparser5.34", "libroot-math-mathmore5.34", "libroot-math-unuran5.34", "libroot-misc-memstat5.34", "libroot-misc-table5.34", "libroot-net-bonjour5.34", "libroot-net-ldap5.34", "libroot-proof-clarens5.34", "libroot-roofit5.34", "libroot-geom5.34", "libroot-graf2d-gpad5.34", "libroot-graf2d-graf5.34", "libroot-graf2d-postscript5.34", "libroot-graf3d-eve5.34", "libroot-graf3d-g3d5.34", "libroot-gui5.34", "libroot-gui-ged5.34", "libroot-hist5.34", "libroot-hist-spectrum5.34", "libroot-html5.34", "libroot-io5.34", "libroot-math-foam5.34", "libroot-math-genvector5.34", "libroot-math-mathcore5.34", "libroot-math-matrix5.34", "libroot-math-minuit5.34", "libroot-math-mlp5.34", "libroot-math-physics5.34", "libroot-math-quadp5.34", "libroot-math-smatrix5.34", "libroot-math-splot5.34", "libroot-misc-minicern5.34", "libroot-montecarlo-eg5.34", "libroot-montecarlo-vmc5.34", "libroot-net5.34", "libroot-net-auth5.34", "libroot-proof5.34", "libroot-proof-proofplayer5.34", "libroot-tmva5.34", "libroot-tree5.34", "libroot-tree-treeplayer5.34", "libroot-core5.34", "root-plugin-graf2d-asimage", "root-plugin-geom-gdml", "root-plugin-gui-qt", "root-plugin-graf2d-qt", "root-plugin-math-fftw3", "root-plugin-math-minuit2", "root-plugin-montecarlo-pythia8", "root-plugin-net-globus", "root-plugin-net-krb5", "root-plugin-proof-peac", "root-plugin-sql-mysql", "root-plugin-sql-odbc", "root-plugin-sql-pgsql", "root-plugin-geom-geombuilder", "root-plugin-geom-geompainter", "root-plugin-graf2d-x11", "root-plugin-graf3d-x3d", "root-plugin-gui-fitpanel", "root-plugin-gui-guibuilder", "root-plugin-gui-sessionviewer", "root-plugin-hist-hbook", "root-plugin-hist-histpainter", "root-plugin-hist-spectrumpainter", "root-plugin-io-sql", "root-plugin-io-xml", "root-plugin-math-fumili", "root-plugin-tree-treeviewer", "root-system-proofd", "root-system-rootd", "root-system-bin", "root-system-common", "root-system", "rivet", "rivet-plugins", "rivet-root-converter", "thepeg", "thepeg-gui", "herwig++", "geant4", "neuron"], "ignore": [], "avoid": []}, "viewing-dev": {"depends": [], "suggests": ["libcollada-dom2.4-dp-dev"], "recommends": ["pdl", "gnudatalanguage", "libgrits-dev", "python3-matplotlib", "libgnuplot-iostream-dev", "libqglviewer-dev", "python3-gnuplot", "python3-gnuplotlib", "libcoin-dev", "libsoqt520-dev", "libvtk7-qt-dev", "libvtk7-dev", "tcl-vtk7", "python3-vtk7", "libvtk7-java", "vtk7-examples", "python3-pivy", "libgtkdataboxmm-dev", "libgtkdatabox-dev", "inventor-dev", "libqtexengine-dev", "libqwtplot3d-qt5-dev", "python3-qwt3d-qt5", "python3-qwt", "libchealpix-dev", "python3-skimage", "python3-skimage-lib", "python3-matplotlib-venn", "libplplot-dev", "python3-plplot-qt", "libglm-dev", "libglbinding-dev", "libforge-dev", "libgli-dev", "libglobjects-dev", "libslvs1-dev", "libgts-dev", "python3-vispy", "libgl2ps-dev", "libqglviewer-dev-qt5", "python3-qwt", "liborigin2-dev"], "ignore": [], "avoid": []}, "geometry": {"depends": [], "suggests": ["libcgal-dev", "libgeometry-primitive-perl", "libmath-geometry-voronoi-perl", "octave-geometry", "rubiks", "libgismo-dev"], "recommends": ["carmetal", "salome-geom", "drgeo", "geogebra-kde"], "ignore": [], "avoid": []}, "economics": {"depends": [], "suggests": ["elpa-ess", "dynare-matlab", "x13as", "science-mathematics", "science-numericalcomputation", "science-statistics", "science-social", "science-financial"], "recommends": ["dynare", "gretl", "octave-econometrics", "r-base", "r-cran-urca", "r-cran-bayesm", "r-cran-foreign", "r-cran-hmisc", "r-cran-tseries", "r-cran-mfilter", "r-cran-lme4", "r-cran-mcmcpack", "r-cran-fimport", "r-cran-fnonlinear", "r-cran-funitroots", "r-cran-gmm", "r-cran-wdi", "r-cran-pwt", "r-cran-pwt8", "r-cran-pwt9", "r-cran-rsdmx", "r-cran-isocodes", "r-cran-dynlm", "r-cran-aer", "r-cran-plm", "r-cran-rdbnomics", "python3-statsmodels", "dolo", "recs", "python3-quantecon", "r-cran-ecdat", "r-other-bmr", "minsky", "r-cran-vars", "r-other-gecon", "netlogo", "r-cran-pdfetch", "pksfc", "repast-symphony", "repast-hpc", "python3-pandasdmx"], "ignore": [], "avoid": []}, "physics-dev": {"depends": [], "suggests": ["libtriangle-dev"], "recommends": ["pyfai", "libnfft3-dev", "libfftw3-dev", "fftw-dev", "sfftw-dev", "python3-gpyfft", "libopenctm-dev", "python3-quantities", "python3-multipletau", "python3-pynfft", "libfeel++-dev", "libplb-dev", "libasl-dev", "trilinos-all-dev", "libdeal.ii-dev", "libp4est-dev", "fenics", "python3-dolfin", "python3-ltfatpy", "python3-pygalmesh", "libxray-absorption-perl", "libxray-scattering-perl", "libxray-spacegroup-perl", "python3-pyode"], "ignore": [], "avoid": []}, "viewing": {"depends": [], "suggests": ["libgrits-dev", "worldwind", "med-imaging", "libgtkmathview-bin", "jeuclid-mathviewer", "texlive-pictures", "pgplot5", "r-cran-plotrix", "r-cran-colorspace", "r-cran-labeling", "r-cran-scales", "r-cran-ggplot2", "r-cran-scatterplot3d", "r-cran-vioplot", "r-cran-shape", "r-cran-qqman", "r-cran-aplpack", "r-cran-aplpack", "findimagedupes", "libpuzzle-bin", "python3-matplotlib", "circos", "circos-tools", "libqglviewer-dev", "libcoin-dev", "libsoqt520-dev", "libvtk7-dev", "libvtk7-qt-dev", "tcl-vtk7", "python3-vtk7", "libvtk7-java", "vtk7-examples", "python3-pivy", "libgts-bin"], "recommends": ["vistrails", "pdl", "gnudatalanguage", "kst", "ifrit", "yorick", "fityk", "gnuplot", "grace", "gri", "labplot", "graphviz", "pyxplot", "plotdrop", "qtiplot", "python3-guiqwt", "imview", "mayavi2", "g3data", "gwyddion", "paraview", "visit", "gle-graphics", "gmsh", "giza-dev", "lybniz", "3depict", "mathgl", "udav", "matlab2tikz", "cassandra", "pgfplots", "feedgnuplot", "libgnuplot-iostream-dev", "libqglviewer2", "python3-gnuplot", "ovito", "scidavis", "veusz", "ctioga2", "python3-seaborn", "trend", "python3-pyqtgraph", "rlplot", "solvespace", "gfsview", "r-cran-sjplot", "geg"], "ignore": [], "avoid": []}, "psychophysics": {"depends": [], "suggests": ["science-neuroscience-cognitive", "visionegg", "tscope", "opensesame", "psytoolkit", "debruijn", "psychlops", "pebl"], "recommends": ["psychopy", "octave-psychtoolbox-3", "libfreenect-dev", "nrec"], "ignore": [], "avoid": []}, "imageanalysis-dev": {"depends": [], "suggests": ["libfreeimage-dev", "lib3ds-dev"], "recommends": ["libcv-dev", "cimg-dev", "libsimage-dev", "libvlfeat-dev", "libvisad-java", "libvigraimpex-dev", "python3-imageio", "liblimereg-dev", "libimglib2-java", "python3-meshio"], "ignore": [], "avoid": []}, "highenergy-physics-dev": {"depends": [], "suggests": ["clhep-doc", "hepmc-examples", "hepmc-user-manual", "hepmc-reference-manual", "lhapdf-ccwrap-doc", "siscone-examples", "siscone-doc-html", "siscone-doc-pdf", "fastjet-doc", "fastjet-examples", "pythia8-examples", "pythia8-doc-html", "pythia8-doc-worksheet", "rivet-user-manual", "rivet-reference", "rivet-plugins-doc", 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