[Blends-commit] [Git][blends-team/med][master] Fix several names and remove packages that will probably never be touched

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Blends Team / med


Commits:
b3de1805 by Andreas Tille at 2022-02-18T11:44:48+01:00
Fix several names and remove packages that will probably never be touched

- - - - -


5 changed files:

- tasks/bio
- tasks/bio-dev
- tasks/covid-19
- tasks/imaging
- tasks/imaging-dev


Changes:

=====================================
tasks/bio
=====================================
@@ -868,7 +868,7 @@ X-Importance: efficient
 
 Recommends: mauve-aligner
 
-Suggests: mcaller
+Recommends: mcaller
 
 Recommends: mecat2
 


=====================================
tasks/bio-dev
=====================================
@@ -24,9 +24,7 @@ Recommends: python3-biopython
 
 Suggests: python3-biopython-sql, python-biopython-doc
 
-Suggests: python3-cogent3
-
-Suggests: python3-mcaller
+Recommends: python3-cogent3
 
 Suggests: python3-joypy
 


=====================================
tasks/covid-19
=====================================
@@ -103,8 +103,7 @@ Recommends: bedtools
 
 Recommends: multiqc
 
-Recommends: artic
-Homepage: https://github.com/nf-core/artic/blob/dev/bin/scrape_software_versions.py
+Recommends: nf-core-artic
 
 Recommends: viralrecon
 Homepage: https://github.com/nf-core/viralrecon/blob/dev/bin/scrape_software_versions.py
@@ -119,7 +118,7 @@ Recommends: ivar
 
 Recommends: varscan
 
-Recommends: snpeff, snpsift
+Recommends: snpeff
 
 Recommends: bcftools
 


=====================================
tasks/imaging
=====================================
@@ -43,9 +43,6 @@ Recommends: nifti2dicom, qnifti2dicom
 
 Recommends: sofa-apps
 
-Recommends: python3-mvpa2
-Why: Suggested by maintainer Michael Hanke <michael.hanke at gmail.com>
-
 Recommends: python3-nipy
 Why: Although listed in -dev task, it also has a strong focus on interactive
  data analysis.


=====================================
tasks/imaging-dev
=====================================
@@ -30,9 +30,6 @@ Recommends: libmaxflow-dev
 
 Suggests: liblimereg-dev
 
-Recommends: python3-mvpa2
-Why: Suggested by maintainer Michael Hanke <michael.hanke at gmail.com>
-
 Recommends: python3-nipy
 
 Recommends: python3-nipype
@@ -43,7 +40,7 @@ Recommends: libvia-dev
 
 Recommends: odin
 
-Recommends: libcv-dev
+Recommends: libopencv-dev
 
 Recommends: libteem-dev
 
@@ -157,6 +154,6 @@ Recommends: libxdf-dev
 
 Recommends: libsimpleitk1-dev, python3-simpleitk
 
-Recommends: pytorch-vision
+Recommends: python3-torchvision
 
 Recommends: libsight-dev



View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/b3de1805c50daae9e5d82f51e0ab0887d7402ba0

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