[Blends-commit] [Git][blends-team/science][master] 4 commits: Replace vtk7 by vtk9
Andreas Tille (@tille)
gitlab at salsa.debian.org
Fri Jul 22 09:06:19 BST 2022
Andreas Tille pushed to branch master at Debian Blends Team / science
Commits:
c3c4211a by Andreas Tille at 2022-07-22T09:48:31+02:00
Replace vtk7 by vtk9
- - - - -
57a634c8 by Andreas Tille at 2022-07-22T10:01:13+02:00
Update dependencies
- - - - -
c36f8b98 by Andreas Tille at 2022-07-22T10:03:06+02:00
Update changelog and dependency_data
- - - - -
1d8ded78 by Andreas Tille at 2022-07-22T10:04:25+02:00
Upload to unstable
- - - - -
7 changed files:
- debian/changelog
- debian/control
- debian/control.stub
- + dependency_data/debian-science_1.14.3.json
- tasks/robotics
- tasks/viewing
- tasks/viewing-dev
Changes:
=====================================
debian/changelog
=====================================
@@ -1,11 +1,12 @@
-debian-science (1.14.3) UNRELEASED; urgency=medium
+debian-science (1.14.3) unstable; urgency=medium
[ Andreas Tille ]
* Re-enable packages that were portet to Python3
* Build-Depends-Indep: blends-dev (>= 0.7.5~)
Closes: #1011982
* Build-Depends: debhelper-compat (= 13)
- * Standards-Version: 4.6.0
+ * Standards-Version: 4.6.1
+ * Replace vtk7 by vtk9
[ Antonio Valentino ]
* Changes in metapackage dependencies
@@ -19,9 +20,90 @@ debian-science (1.14.3) UNRELEASED; urgency=medium
* Bump debhelper dependency to >= 13, since that's what is used in
debian/compat.
* Set debhelper-compat version in Build-Depends.
- * Update standards version to 4.6.0, no changes needed.
- -- Andreas Tille <tille at debian.org> Thu, 04 Nov 2021 08:42:40 +0100
+ * start of automatic changelog entry *
+
+ * Changes in metapackage dependencies
+ -science-chemistry
+ added:
+ Recommends: python3-openbabel
+ -science-dataacquisition
+ added:
+ Recommends: python3-sardana
+ -science-financial
+ added:
+ Recommends: python3-stopt, libstopt-dev
+ -science-imageanalysis-dev
+ added:
+ Recommends: python3-vigra
+ -science-machine-learning
+ added:
+ Recommends: python3-vigra
+ Suggests: libxgboost-predictor-java
+ -science-mathematics
+ added:
+ Recommends: phcpack, libjgrapht-java
+ Suggests: libspectra-dev
+ -science-mathematics-dev
+ added:
+ Recommends: python3-stopt, libstopt-dev
+ Suggests: python3-numpy-groupies
+ removed:
+ Suggests: python-numpy-groupies
+ -science-meteorology
+ added:
+ Recommends: python3-cfgrib
+ removed:
+ Recommends: python-cfgrib
+ -science-neuroscience-cognitive
+ added:
+ Suggests: python-mvpa2
+ -science-neuroscience-modeling
+ added:
+ Suggests: python3-pynn
+ -science-numericalcomputation
+ added:
+ Recommends: python3-resampy, python3-csa
+ Suggests: python3-stopt, libstopt-dev
+ -science-robotics
+ added:
+ Suggests: vtk9
+ removed:
+ Suggests: vtk7
+ -science-robotics-dev
+ added:
+ Recommends: libignition-fuel-tools-dev, libsdformat-dev,
+ libignition-math-dev, ignition-tools, libgazebo-dev,
+ libignition-utils-dev, libdart-dev,
+ libignition-plugin-dev
+ removed:
+ Recommends: libgazebo9-dev, libignition-math2-dev,
+ libignition-fuel-tools1-dev, libkido-dev,
+ libignition-math4-dev, libsdformat4-dev
+ -science-simulations
+ added:
+ Recommends: libdart-dev, gazebo
+ removed:
+ Recommends: gazebo9
+ -science-statistics
+ added:
+ Recommends: libdistlib-java
+ -science-viewing
+ added:
+ Suggests: python3-vtk9, libvtk9-qt-dev, vtk9-examples, libvtk9-dev,
+ libvtk9-java
+ removed:
+ Suggests: libvtk7-java, libvtk7-dev, libvtk7-qt-dev, python3-vtk7,
+ vtk7-examples, tcl-vtk7
+ -science-viewing-dev
+ added:
+ Recommends: python3-vtk9, libvtk9-qt-dev, vtk9-examples, libvtk9-dev,
+ libvtk9-java
+ removed:
+ Recommends: libvtk7-java, libvtk7-dev, libvtk7-qt-dev, python3-vtk7,
+ vtk7-examples, tcl-vtk7
+
+ -- Andreas Tille <tille at debian.org> Fri, 22 Jul 2022 10:03:20 +0200
debian-science (1.14.2) unstable; urgency=medium
=====================================
debian/control
=====================================
@@ -7,11 +7,10 @@ Uploaders: Andreas Tille <tille at debian.org>,
Ole Streicher <olebole at debian.org>
Build-Depends-Indep: blends-dev (>= 0.7.5~)
Build-Depends: debhelper-compat (= 13)
-Standards-Version: 4.6.0
+Standards-Version: 4.6.1
Vcs-Browser: https://salsa.debian.org/blends-team/science
Vcs-Git: https://salsa.debian.org/blends-team/science.git
Homepage: https://wiki.debian.org/DebianScience/
-Build-Depends: debhelper-compat (= 13)
Package: science-tasks
Architecture: all
@@ -189,13 +188,13 @@ Depends: ${misc:Depends},
Recommends: adun.app,
apbs,
avogadro,
+ bkchem,
bodr,
chemeq,
chemical-mime-data,
chemical-structures,
chemtool,
cp2k,
- drawxtl,
easychem,
gabedit,
galculator,
@@ -208,16 +207,13 @@ Recommends: adun.app,
gdis,
gdpc,
gelemental,
- ghemical,
gperiodic,
- gromacs | gromacs-mpich | gromacs-openmpi,
+ gromacs,
jmol,
kalzium,
katomic,
libcdk-java,
mopac7-bin,
- mpqc,
- mpqc-support,
msxpertsuite,
openbabel,
openfoam,
@@ -225,7 +221,7 @@ Recommends: adun.app,
psi3,
pyfai,
pymol,
- python3-pymzml,
+ python3-openbabel,
qutemol,
rasmol,
tandem-mass,
@@ -233,10 +229,12 @@ Recommends: adun.app,
xbs,
xdrawchem,
xmakemol-gl | xmakemol
-Suggests: bkchem,
+Suggests: drawxtl,
fdmnes,
gcu-plugin,
gdpc-examples,
+ ghemical,
+ gromacs-mpich | gromacs-openmpi,
libegad,
libint,
libschroedinger-coordgenlibs-dev,
@@ -244,9 +242,12 @@ Suggests: bkchem,
mmass-modules,
molden,
molekel,
+ mpqc,
+ mpqc-support,
openchrom,
python-pymzml-doc,
python3-periodictable,
+ python3-pymzml,
tinker,
viewmol
Description: Debian Science Chemistry packages
@@ -261,11 +262,9 @@ Architecture: all
Depends: ${misc:Depends},
science-config (= ${source:Version}),
science-tasks (= ${source:Version})
-Recommends: clickhouse-tools,
- csvkit,
+Recommends: csvkit,
engauge-digitizer,
filo,
- g3data,
ghkl,
jaaa,
libfreenect-dev,
@@ -277,8 +276,10 @@ Recommends: clickhouse-tools,
xlsx2csv,
xyscan
Suggests: binoculars,
+ clickhouse-tools,
comedi-source,
epics,
+ g3data,
gnudatalanguage,
gpsd,
hart,
@@ -289,6 +290,7 @@ Suggests: binoculars,
opendap,
plot-digitizer,
python3-pytango,
+ python3-sardana,
python3-streamz,
python3-taurus,
qtdmm,
@@ -313,6 +315,8 @@ Recommends: libgetdata-dev,
libgetdata-perl,
liblog4tango-dev,
liblxi-dev,
+ libopenrefine-arithcode-java,
+ libopenrefine-vicino-java,
libsdsl-dev,
libtango-dev,
python3-aws-xray-sdk,
@@ -323,8 +327,6 @@ Recommends: libgetdata-dev,
python3-segyio,
python3-xrayutilities
Suggests: libnarval1-dev,
- libopenrefine-arithcode-java,
- libopenrefine-vicino-java,
python3-intake,
r-cran-mi,
r-cran-ncdf4
@@ -360,8 +362,7 @@ Recommends: environment-modules,
gridengine-qmon,
ipython3,
mpich,
- openmpi-bin,
- python3-scoop
+ openmpi-bin
Suggests: coop-computing-tools,
dmtcp,
globus-core,
@@ -372,7 +373,8 @@ Suggests: coop-computing-tools,
octave-mpi,
openmpipython,
psom,
- python3-mpi4py
+ python3-mpi4py,
+ python3-scoop
Description: Debian Science Distributed Computing packages
This metapackage will install Debian Science packages useful for
various types of distributed computing, such as grid-, cloud-, cluster-
@@ -500,7 +502,6 @@ Recommends: calculix-ccx,
code-saturne,
dime,
fenics,
- freecad,
gerris,
getdp,
gmsh,
@@ -515,6 +516,7 @@ Recommends: calculix-ccx,
python3-dolfin,
python3-escript | python3-escript-mpi,
python3-fiat,
+ python3-openturns,
python3-silo,
sailcut,
scram,
@@ -534,13 +536,13 @@ Suggests: ann-tools,
ecs,
eficas,
feel++-apps,
+ freecad,
hdfview,
logcentral,
logcentral-tools,
metis-edf,
openmeca,
pycgns,
- python3-openturns,
r-cran-spc,
salome-gui,
salome-jobmanager,
@@ -591,6 +593,7 @@ Recommends: code-saturne-bin,
libnlopt-dev,
liboce-ocaf-dev,
liboce-visualization-dev,
+ libopenturns-dev,
libp4est-dev,
libplb-dev,
libsilo-dev,
@@ -598,7 +601,6 @@ Recommends: code-saturne-bin,
libslicot-dev,
libxdmf-dev,
python3-collada,
- python3-fluids,
python3-netcdf4,
python3-pygalmesh,
python3-pynfft,
@@ -620,13 +622,13 @@ Suggests: ceres-solver-doc,
libjhdf5-java,
libluminate-dev,
libmetis-edf-dev,
- libopenturns-dev,
libqwt-dev | libqwt5-qt4-dev,
libslepc3.4.2-dev,
libtet1.4-dev,
libug-dev,
openturns-examples,
pycgns,
+ python3-fluids,
salome-kernel-dev
Description: Debian Science Engineering-dev packages
This metapackage will install Debian Science packages which might be
@@ -640,24 +642,26 @@ Architecture: all
Depends: ${misc:Depends},
science-config (= ${source:Version}),
science-tasks (= ${source:Version})
-Recommends: r-cran-fasianoptions,
+Recommends: libstopt-dev,
+ python3-stopt,
r-cran-fassets,
r-cran-fbasics,
r-cran-fbonds,
r-cran-fcopulae,
- r-cran-fexoticoptions,
r-cran-fextremes,
r-cran-fgarch,
r-cran-fimport,
r-cran-fmultivar,
r-cran-fnonlinear,
- r-cran-foptions,
r-cran-fportfolio,
r-cran-fregression,
r-cran-ftrading,
r-cran-funitroots,
r-cran-timedate,
r-cran-timeseries
+Suggests: r-cran-fasianoptions,
+ r-cran-fexoticoptions,
+ r-cran-foptions
Description: Debian Science financial engineering and computational finance
This metapackage will install Debian Science packages for financial
engineering and computational finance.
@@ -683,7 +687,6 @@ Recommends: avce00,
grace,
grass,
grass-doc,
- hydroffice.bag-tools,
josm,
mapnik-utils,
mapserver-bin,
@@ -715,6 +718,7 @@ Suggests: drawmap,
gpsdrive,
gpx2shp,
hyantesite,
+ hydroffice.bag-tools,
libmseed-dev,
openjump,
pgadmin3,
@@ -1001,7 +1005,8 @@ Recommends: cimg-dev,
libvigraimpex-dev,
libvlfeat-dev,
python3-imageio,
- python3-meshio
+ python3-meshio,
+ python3-vigra
Suggests: lib3ds-dev,
libcv-dev,
libfreeimage-dev,
@@ -1155,7 +1160,6 @@ Recommends: agda,
cvc4,
depqbf,
gringo,
- hol-light,
hol88,
lbt,
maria,
@@ -1172,6 +1176,7 @@ Recommends: agda,
Suggests: coala,
coinor-libcoinmp-dev,
cvc3,
+ hol-light,
mace2,
matita,
prover9,
@@ -1204,6 +1209,7 @@ Recommends: autoclass,
python3-opencv,
python3-sklearn,
python3-statsmodels,
+ python3-vigra,
r-cran-amore,
r-cran-bayesm,
r-cran-class,
@@ -1269,11 +1275,13 @@ Recommends: 4ti2,
coq,
cryptominisat,
eclib-tools,
+ eprover,
fenics,
flintqs,
form,
fplll-tools,
freefem,
+ freefem++,
frobby,
gap,
gap-character-tables,
@@ -1296,9 +1304,8 @@ Recommends: 4ti2,
ginac-tools,
gmsh,
graphviz,
- hol-light,
- julia,
lcalc,
+ libjgrapht-java,
libmatheval1,
lp-solve,
lrcalc,
@@ -1317,6 +1324,7 @@ Recommends: 4ti2,
octave,
palp,
pari-gp,
+ phcpack,
planarity,
polylib-utils,
proofgeneral,
@@ -1324,8 +1332,10 @@ Recommends: 4ti2,
python3-dolfin,
python3-ffc,
python3-minieigen,
+ python3-openturns,
python3-sagenb-export,
python3-ufl,
+ qepcad,
qhull-bin,
qsopt-ex,
regina-normal,
@@ -1353,10 +1363,8 @@ Recommends: 4ti2,
xmds2
Suggests: ann-tools,
cliquer,
- eprover,
evolver-ogl | evolver-nox,
feel++-apps,
- freefem++,
freefem3d,
freemat,
gap-gapdoc,
@@ -1368,8 +1376,11 @@ Suggests: ann-tools,
gap-small-groups-extra,
gap-trans-groups,
gmp-ecm,
+ hol-light,
isabelle,
+ julia,
kseg,
+ libspectra-dev,
matita,
matlab-support,
model-builder,
@@ -1380,8 +1391,6 @@ Suggests: ann-tools,
proofgeneral-coq,
prover9,
pyomo,
- python3-openturns,
- qepcad,
r-cran-evd,
sagetex,
scilab-ann,
@@ -1439,6 +1448,7 @@ Recommends: code-saturne-bin,
libflint-arb-dev,
libflint-dev,
libfplll-dev,
+ libfreefem++-dev,
libfreefem-dev,
libfrobby-dev,
libgemmlowp-dev,
@@ -1452,13 +1462,11 @@ Recommends: code-saturne-bin,
libhypre-dev,
libiml-dev,
libitsol-dev,
- libjama-dev,
libjgrapht0.8-java | libjgrapht0.6-java,
liblapack-dev,
liblbfgs-dev,
liblfunction-dev,
liblinbox-dev,
- liblip-dev,
liblrcalc-dev,
libm4ri-dev,
libm4rie-dev,
@@ -1476,11 +1484,11 @@ Recommends: code-saturne-bin,
libnfft3-dev,
libnglib-dev,
libopenblas-dev,
+ libopenturns-dev,
libp4est-dev,
libparsington-java,
libplb-dev,
libprimesieve-dev,
- libpynac-dev,
libqcustomplot-dev,
libqd-dev,
libqhull-dev,
@@ -1495,6 +1503,7 @@ Recommends: code-saturne-bin,
libsopt-dev,
libsparskit-dev,
libspooles-dev,
+ libstopt-dev,
libstxxl-dev,
libsuitesparse-dev,
libsuperlu-dev,
@@ -1502,6 +1511,7 @@ Recommends: code-saturne-bin,
libtachyon-dev,
libtnt-dev,
libviennacl-dev,
+ libxsmm-dev,
libzn-poly-dev,
minpack-dev,
petsc-dev,
@@ -1515,14 +1525,15 @@ Recommends: code-saturne-bin,
python3-dtcwt,
python3-ffc,
python3-gimmik,
- python3-gpyfft,
python3-ltfatpy,
python3-numexpr,
python3-numpy,
+ python3-openturns,
python3-optlang,
python3-petsc4py,
python3-pynfft,
python3-slepc4py,
+ python3-stopt,
python3-ufl,
sfftw-dev,
slepc-dev,
@@ -1543,21 +1554,22 @@ Suggests: cfortran,
libdune-typetree-dev,
libdune-uggrid-dev,
libfeel++-dev,
- libfreefem++-dev,
libgismo-dev,
libigraph0-dev,
libitpp-dev,
+ libjama-dev,
libjlapack-java,
liblevmar-dev,
+ liblip-dev,
liblrs-dev,
libmkl-full-dev,
libmtj-java,
libnetlib-java,
libntl-dev,
- libopenturns-dev,
libparmetis-dev,
libpolybori-dev,
libpolybori-groebner-dev,
+ libpynac-dev,
libqrupdate-dev,
libsollya-dev,
libsuitesparse-metis-dev,
@@ -1566,12 +1578,11 @@ Suggests: cfortran,
libtet1.4.2-dev,
libtrilinos-dev,
libug-dev,
- libxsmm-dev,
openturns-examples,
- python-numpy-groupies,
+ python3-gpyfft,
python3-linop,
python3-msgpack-numpy,
- python3-openturns,
+ python3-numpy-groupies,
python3-pyviennacl,
sollya
Description: Debian Science Mathematics-dev packages
@@ -1610,6 +1621,7 @@ Recommends: cdftools,
nco,
ncview,
python3-cdo,
+ python3-cfgrib,
python3-cmor,
python3-drslib,
python3-eccodes,
@@ -1629,7 +1641,6 @@ Suggests: dballe,
gnudatalanguage,
octave-octcdf,
paraview,
- python-cfgrib,
python3-openturns,
r-base
Description: Debian Science Meteorology packages
@@ -1658,7 +1669,6 @@ Recommends: fftw-dev,
libfftw3-doc,
libgadap-dev,
libgctp-dev,
- libgrib2c-dev,
libhdfeos-dev,
libhe5-hdfeos-dev,
liblapack-dev,
@@ -1667,6 +1677,7 @@ Recommends: fftw-dev,
libncarg-bin,
libnetcdf-dev,
liboasis3-dev,
+ libopenturns-dev,
libproj-dev,
libsphere-dev,
libterralib-dev,
@@ -1674,7 +1685,7 @@ Recommends: fftw-dev,
libwreport-dev,
netcdf-bin,
python3-coda,
- python3-gpyfft,
+ python3-openturns,
python3-sasmodels,
python3-ulmo,
r-cran-rnetcdf,
@@ -1685,14 +1696,14 @@ Suggests: gfortran,
ksh,
libcblas-dev,
libfeel++-dev,
+ libgrib2c-dev,
liblas-dev,
- libopenturns-dev,
librsl-dev,
mpi-defaults-dev,
openturns-examples,
pkg-config,
python3-coards,
- python3-openturns,
+ python3-gpyfft,
udunits-bin
Description: Debian Science Meteorology-dev packages
This metapackage will install Debian Science packages which might be
@@ -1714,14 +1725,12 @@ Recommends: abinit,
cbflib-bin,
cod-tools,
cp2k,
- drawxtl,
etsf-io,
feynmf,
fityk,
garlic,
gdis,
ggobi,
- ghemical,
gnuplot,
gpaw,
gperiodic,
@@ -1733,7 +1742,6 @@ Recommends: abinit,
liblapack3,
libssm-bin,
mayavi2,
- mpqc,
nco,
ncview,
netcdf-bin,
@@ -1754,6 +1762,7 @@ Suggests: ape,
atompaw,
axiom,
bigdft,
+ drawxtl,
dx,
dx-doc,
dxsamples,
@@ -1761,6 +1770,7 @@ Suggests: ape,
extrema,
fdmnes,
feel++-apps,
+ ghemical,
gpiv,
gpivtools,
hdf5-helpers,
@@ -1769,6 +1779,7 @@ Suggests: ape,
libgsl0ldbl,
liblevmar-2-6,
maxima,
+ mpqc,
netcdf-doc,
octaviz,
octopus,
@@ -1834,12 +1845,10 @@ Recommends: abinit-doc,
pyfai,
python3-binoculars,
python3-fabio,
- python3-gpyfft,
python3-periodictable,
python3-pycodcif,
python3-sasmodels,
r-cran-rnetcdf,
- scalapack-doc,
science-mathematics-dev
Suggests: gsl-doc-info,
gsl-doc-pdf,
@@ -1853,9 +1862,11 @@ Suggests: gsl-doc-info,
libroot-montecarlo-vmc-dev,
libroot-tmva-dev,
oce-draw,
+ python3-gpyfft,
python3-h5py,
python3-netcdf4,
root-system,
+ scalapack-doc,
wannier90-1-dev
Description: Debian Science Nanoscale Physics development packages
This metapackage will install Debian Science packages which might be
@@ -1874,7 +1885,6 @@ Depends: ${misc:Depends},
Recommends: amide,
dicom3tools,
dicomnifti,
- itksnap,
medcon,
minc-tools,
mriconvert,
@@ -1883,7 +1893,11 @@ Recommends: amide,
nifti2dicom,
praat,
psignifit,
+ python3-dipy,
python3-nibabel,
+ python3-nipy,
+ python3-nipype,
+ python3-nitime,
python3-pydicom,
python3-statsmodels,
qnifti2dicom,
@@ -1901,12 +1915,14 @@ Suggests: afni,
fslview,
hid,
iqr,
+ itksnap,
lipsia,
mni-autoreg,
mni-n3,
openmeeg-tools,
openwalnut-qt4,
pysurfer,
+ python-mvpa2,
science-psychophysics,
science-typesetting,
slicer,
@@ -1939,6 +1955,7 @@ Suggests: cnrun,
moose,
nest,
pcsim,
+ python3-pynn,
xppaut
Description: Debian Science packages for modeling of neural systems
This metapackage will install Debian packages which might be useful for
@@ -1968,7 +1985,6 @@ Recommends: admesh,
esys-particle,
gnudatalanguage,
ipython3,
- julia,
lammps,
libadolc-dev,
libceres-dev,
@@ -1986,15 +2002,14 @@ Recommends: admesh,
pdl,
psurface,
python3-bitstring,
+ python3-csa,
python3-deap,
python3-escript | python3-escript-mpi,
- python3-guiqwt,
python3-lmfit,
python3-matplotlib,
python3-numpy,
- python3-pysph,
+ python3-resampy,
python3-scipy,
- python3-sfepy,
python3-sparse,
python3-tables,
python3-theano,
@@ -2007,7 +2022,7 @@ Recommends: admesh,
spyder,
toulbar2,
vitables,
- yade,
+ xtensor-dev,
yorick
Suggests: calculix-ccx-doc,
calculix-ccx-test,
@@ -2020,6 +2035,7 @@ Suggests: calculix-ccx-doc,
geneva,
hpcc,
iep,
+ julia,
libarrayfire-unified-dev,
libcblas-dev,
libclblas-dev,
@@ -2030,6 +2046,7 @@ Suggests: calculix-ccx-doc,
libpsurface-dev,
libquantum-dev,
libscirenderer-java,
+ libstopt-dev,
libsuitesparse-metis-dev,
matlab-support,
metis-edf,
@@ -2042,13 +2059,17 @@ Suggests: calculix-ccx-doc,
python3-compyle,
python3-cyarray,
python3-dbfread,
+ python3-guiqwt,
python3-leather,
python3-numcodecs,
python3-pydap,
+ python3-pysph,
+ python3-sfepy,
python3-spyder-line-profiler,
python3-spyder-memory-profiler,
python3-spyder-reports,
python3-spyder-unittest,
+ python3-stopt,
python3-woo,
python3-zarr,
scilab-ann,
@@ -2057,8 +2078,8 @@ Suggests: calculix-ccx-doc,
scilab-scimax,
scilab-swt,
theano-doc,
- xtensor-dev,
- xtensor-python-dev
+ xtensor-python-dev,
+ yade
Description: Debian Science Numerical Computation packages
This metapackage will install Debian Science packages useful for
numerical computation. The packages provide an array oriented
@@ -2072,11 +2093,10 @@ Architecture: all
Depends: ${misc:Depends},
science-config (= ${source:Version}),
science-tasks (= ${source:Version})
-Recommends: abinit | mpqc | psi3,
+Recommends: abinit | psi3,
axiom,
cadabra,
cp2k,
- drawxtl,
etsf-io,
feynmf,
fityk,
@@ -2089,7 +2109,6 @@ Recommends: abinit | mpqc | psi3,
oce-draw,
openfoam,
opticalraytracer,
- pyfr,
pymca,
python3-deap,
python3-sympy,
@@ -2101,6 +2120,7 @@ Recommends: abinit | mpqc | psi3,
Suggests: blzpack,
cernlib,
clhep,
+ drawxtl,
espresso++,
evolver-ogl | evolver-nox,
fdmnes,
@@ -2114,12 +2134,13 @@ Suggests: blzpack,
libroot-math-mlp-dev,
libroot-montecarlo-vmc-dev,
libroot-tmva-dev,
+ mpqc | openmx,
octaviz,
openctm-tools,
- openmx,
paw,
paw++,
paw-demos,
+ pyfr,
root-system,
science-mathematics,
science-statistics,
@@ -2150,7 +2171,6 @@ Recommends: fenics,
libxray-spacegroup-perl,
pyfai,
python3-dolfin,
- python3-gpyfft,
python3-ltfatpy,
python3-multipletau,
python3-pygalmesh,
@@ -2160,7 +2180,8 @@ Recommends: fenics,
sfftw-dev,
trilinos-all-dev
Suggests: libfeel++-dev,
- libtriangle-dev
+ libtriangle-dev,
+ python3-gpyfft
Description: Debian Science Physics-dev packages
This metapackage will install Debian Science packages which might be
helpful for development of applications for Mathematics.
@@ -2211,7 +2232,6 @@ Depends: ${misc:Depends},
science-config (= ${source:Version}),
science-tasks (= ${source:Version})
Recommends: aseba,
- gazebo,
joint-state-publisher,
liburdfdom-tools,
octomap-tools,
@@ -2228,6 +2248,7 @@ Recommends: aseba,
Suggests: arduino-mk,
choreonoid,
d-collide,
+ gazebo9,
gnuplot,
joint-state-publisher-gui,
libcoin-runtime,
@@ -2244,7 +2265,7 @@ Suggests: arduino-mk,
rtai,
rtnet,
solid,
- vtk7,
+ vtk9,
xenomai-runtime
Description: Debian Robotics packages
This metapackage is part of the Debian Pure Blend "Debian Science"
@@ -2263,8 +2284,8 @@ Recommends: ignition-tools,
libccd-dev,
libcomedi-dev,
libconsole-bridge-dev,
+ libdart-dev,
libfcl-dev,
- libgazebo-dev,
libignition-cmake-dev,
libignition-common-dev,
libignition-fuel-tools-dev,
@@ -2274,7 +2295,6 @@ Recommends: ignition-tools,
libignition-transport-dev,
libignition-utils-dev,
libkdl-parser-dev,
- libdart-dev,
liboctomap-dev,
libode-dev,
libompl-dev,
@@ -2289,8 +2309,6 @@ Recommends: ignition-tools,
libslicot-dev,
liburdfdom-dev,
liburdfdom-headers-dev,
- libvisp-dev,
- python3-catkin-lint,
python3-comedilib,
python3-tf2,
ros-desktop-dev,
@@ -2302,7 +2320,10 @@ Recommends: ignition-tools,
ros-simulators-dev
Suggests: libcnoid-dev,
libcv-dev,
+ libgazebo-dev,
libroboptim-core-dev,
+ libvisp-dev,
+ python3-catkin-lint,
visp-images-data
Description: Debian Robotics development packages
This metapackage is part of the Debian Pure Blend "Debian Science"
@@ -2318,33 +2339,34 @@ Depends: ${misc:Depends},
Recommends: calculix-ccx,
calculix-cgx,
esys-particle,
- gazebo,
getdp,
lammps,
libceres-dev,
+ libdart-dev,
liggghts,
music-bin,
neuron,
occt-draw,
occt-misc,
openfoam,
- pysph-viewer,
python3-deap,
python3-escript | python3-escript-mpi,
- python3-pysph,
- python3-sfepy,
- sumo,
- yade
+ sumo
Suggests: calculix-ccx-doc,
calculix-ccx-test,
calculix-cgx-examples,
ceres-solver-doc,
fdmnes,
+ gazebo,
libgismo-dev,
libkim-api-v2-models,
libopensurgsim-dev,
+ pysph-viewer,
+ python3-pysph,
+ python3-sfepy,
python3-woo,
- radiance
+ radiance,
+ yade
Description: Debian Science Simulation packages
This metapackage will install Debian Science packages that are
used to do simulations in different fields of science.
@@ -2358,10 +2380,12 @@ Depends: ${misc:Depends},
Recommends: apophenia-bin,
datamash,
elpa-ess,
+ libdistlib-java,
littler,
psignifit,
pspp,
python3-bayespy,
+ python3-openturns,
python3-pandas,
python3-scipy,
python3-statsmodels,
@@ -2376,7 +2400,6 @@ Recommends: apophenia-bin,
r-cran-boot,
r-cran-bradleyterry2,
r-cran-ca,
- r-cran-cairodevice,
r-cran-car,
r-cran-caret,
r-cran-chron,
@@ -2404,7 +2427,6 @@ Recommends: apophenia-bin,
r-cran-fcopulae,
r-cran-fextremes,
r-cran-fmultivar,
- r-cran-foptions,
r-cran-foreign,
r-cran-fportfolio,
r-cran-gam,
@@ -2417,10 +2439,8 @@ Recommends: apophenia-bin,
r-cran-gplots,
r-cran-gregmisc,
r-cran-gtools,
- r-cran-hdf5,
r-cran-hmisc,
r-cran-hypergeo,
- r-cran-its,
r-cran-kernsmooth,
r-cran-lattice,
r-cran-latticeextra,
@@ -2462,9 +2482,7 @@ Recommends: apophenia-bin,
r-cran-rcmdr,
r-cran-relimp,
r-cran-reshape2,
- r-cran-rggobi,
r-cran-rgl,
- r-cran-rgtk2,
r-cran-rinside,
r-cran-rmpi,
r-cran-rms,
@@ -2474,7 +2492,6 @@ Recommends: apophenia-bin,
r-cran-rquantlib,
r-cran-rsdmx,
r-cran-rserve,
- r-cran-rsprng,
r-cran-sandwich,
r-cran-sem,
r-cran-sm,
@@ -2499,20 +2516,23 @@ Recommends: apophenia-bin,
Suggests: libapophenia2-dev,
libtamuanova-dev,
node-shiny-server-client,
- python3-openturns,
r-cran-bbmle,
r-cran-blockmodeling,
r-cran-brglm,
+ r-cran-cairodevice,
r-cran-catools,
r-cran-ellipse,
r-cran-fastmatch,
r-cran-fcalendar,
r-cran-fecofin,
+ r-cran-foptions,
r-cran-futile.logger,
r-cran-futile.options,
r-cran-gnm,
+ r-cran-hdf5,
r-cran-igraph,
r-cran-irlba,
+ r-cran-its,
r-cran-lambda.r,
r-cran-luminescence,
r-cran-magrittr,
@@ -2522,8 +2542,11 @@ Suggests: libapophenia2-dev,
r-cran-princurve,
r-cran-r.oo,
r-cran-r.utils,
+ r-cran-rggobi,
+ r-cran-rgtk2,
r-cran-rngtools,
r-cran-rpvm,
+ r-cran-rsprng,
r-cran-spc,
rstudio,
science-mathematics
@@ -2606,20 +2629,16 @@ Depends: ${misc:Depends},
science-config (= ${source:Version}),
science-tasks (= ${source:Version})
Recommends: 3depict,
- ctioga2,
feedgnuplot,
fityk,
- g3data,
geg,
gfsview,
giza-dev,
- gle-graphics,
gmsh,
gnudatalanguage,
gnuplot,
grace,
graphviz,
- gri,
gwyddion,
imview,
kst,
@@ -2632,7 +2651,6 @@ Recommends: 3depict,
paraview,
pdl,
python3-gnuplot,
- python3-guiqwt,
python3-pyqtgraph,
python3-seaborn,
pyxplot,
@@ -2640,13 +2658,16 @@ Recommends: 3depict,
solvespace,
trend,
udav,
- veusz,
vistrails,
yorick
Suggests: cassandra,
circos,
circos-tools,
+ ctioga2,
findimagedupes,
+ g3data,
+ gle-graphics,
+ gri,
ifrit,
jeuclid-mathviewer,
libcoin-dev,
@@ -2657,17 +2678,18 @@ Suggests: cassandra,
libqglviewer-dev,
libqglviewer2,
libsoqt520-dev,
- libvtk7-dev,
- libvtk7-java,
- libvtk7-qt-dev,
+ libvtk9-dev,
+ libvtk9-java,
+ libvtk9-qt-dev,
med-imaging,
ovito,
pgfplots,
pgplot5,
plotdrop,
+ python3-guiqwt,
python3-matplotlib,
python3-pivy,
- python3-vtk7,
+ python3-vtk9,
qtiplot,
r-cran-aplpack,
r-cran-colorspace,
@@ -2681,10 +2703,10 @@ Suggests: cassandra,
r-cran-vioplot,
rlplot,
scidavis,
- tcl-vtk7,
texlive-pictures,
+ veusz,
visit,
- vtk7-examples,
+ vtk9-examples,
worldwind
Description: Debian Science data visualisation packages
This metapackage will install Debian Science packages related to data
@@ -2715,9 +2737,9 @@ Recommends: gnudatalanguage,
libqwtplot3d-qt5-dev,
libslvs1-dev,
libsoqt520-dev,
- libvtk7-dev,
- libvtk7-java,
- libvtk7-qt-dev,
+ libvtk9-dev,
+ libvtk9-java,
+ libvtk9-qt-dev,
pdl,
python3-gnuplot,
python3-gnuplotlib,
@@ -2730,9 +2752,8 @@ Recommends: gnudatalanguage,
python3-skimage,
python3-skimage-lib,
python3-vispy,
- python3-vtk7,
- tcl-vtk7,
- vtk7-examples
+ python3-vtk9,
+ vtk9-examples
Suggests: libcollada-dom2.4-dp-dev,
libgli-dev,
libgrits-dev,
@@ -2764,3 +2785,4 @@ Suggests: cwlformat,
Description: workflow management systems useful for scientific research
This task lists some packages providing workflow management
systems useful for scientific research.
+
=====================================
debian/control.stub
=====================================
@@ -6,7 +6,7 @@ Uploaders: Andreas Tille <tille at debian.org>,
Ole Streicher <olebole at debian.org>
Build-Depends-Indep: blends-dev (>= 0.7.5~)
Build-Depends: debhelper-compat (= 13)
-Standards-Version: 4.6.0
+Standards-Version: 4.6.1
Vcs-Browser: https://salsa.debian.org/blends-team/science
Vcs-Git: https://salsa.debian.org/blends-team/science.git
Homepage: https://wiki.debian.org/DebianScience/
=====================================
dependency_data/debian-science_1.14.3.json
=====================================
@@ -0,0 +1 @@
+{"geography": {"depends": [], "suggests": ["googleearth-package", "sumo", "libmseed-dev", "python3-pyepsg"], "recommends": ["gis-workstation", "grass", "qgis", "qgis-plugin-grass", "proj-bin", "mapserver-bin", "gmt", "gpsbabel", "gpx2shp", "gpsd", "gpsdrive", "gpsman", "earth3d", "openscenegraph", "drawmap", "gpstrans", "geoip-bin", "gpsd-clients", "grass-doc", "python3-mapscript", "phppgadmin", "gpsmanshp", "viking", "avce00", "e00compr", "gdal-bin", "ogdi-bin", "postgis", "osm2pgsql", "josm", "gosmore", "python3-mapnik", "mapnik-utils", "osmpbf-bin", "hyantesite", "r-cran-sp", "r-cran-maptools", "r-cran-mapdata", "r-cran-mapproj", "r-cran-maps", "r-cran-fields", "r-cran-raster", "pgadmin3", "openjump", "grace", "hydroffice.bag-tools", "python3-cartopy", "sac2mseed"], "ignore": [], "avoid": []}, "dataacquisition": {"depends": [], "suggests": ["gnudatalanguage", "comedi-source", "rtai", "xenomai-runtime", "linux-image-2.6-rt", "rt-tests", "gpsd", "binoculars", "python3-streamz", "tango-db", "tango-starter", "tango-accesscontrol", "python3-pytango", "python3-taurus", "hart"], "recommends": ["engauge-digitizer", "qtdmm", "g3data", "ktimetrace", "netcdf-bin", "python3-sardana", "libgetdata-tools", "jaaa", "ghkl", "narval-utils", "xyscan", "filo", "segyio-bin", "clickhouse-tools", "csvkit", "lxi-tools", "xlsx2csv", "python3-pyvisa", "mx-dataacquisition", "epics", "plot-digitizer", "libfreenect-dev", "opendap"], "ignore": [], "avoid": []}, "workflow": {"depends": [], "suggests": ["cwlformat", "libbenchmark-tools"], "recommends": ["make", "pegasus-wms", "snakemake", "cwltool", "coop-computing-tools", "python3-nipype", "gearman", "gearman-tools", "toil", "python3-wdlparse"], "ignore": [], "avoid": []}, "logic": {"depends": [], "suggests": ["coinor-libcoinmp-dev"], "recommends": ["agda", "coq", "hol-light", "hol88", "matita", "proofgeneral", "why", "why3", "depqbf", "picosat", "sat4j", "alt-ergo", "boolector", "cvc3", "cvc4", "z3", "prover9", "mace2", "maude", "spass", "coinor-cbc", "coinor-symphony", "minisat+", "clasp", "coala", "gringo", "lbt", "maria", "mona", "toulbar2"], "ignore": [], "avoid": []}, "meteorology": {"depends": [], "suggests": ["paraview", "geonetwork", "gnudatalanguage", "r-base", "octave-octcdf", "gerris", "python3-openturns"], "recommends": ["libemos-bin", "cdo", "nco", "dballe", "xygrib", "metview", "ncview", "grads", "ferret-vis", "cdftools", "fcm", "makedepf90", "flextra", "flexpart", "magics++", "cylc", "libeccodes-tools", "ecaccess", "ncl-ncarg", "harp", "python3-cfgrib", "python3-cdo", "python3-netcdf4", "python3-grib", "python3-eccodes", "python3-drslib", "python3-metaconfig", "python3-gsw", "python3-iapws", "python3-gsw", "python3-iapws", "python3-cmor", "python3-ferret", "python3-sphere", "cmor-tables", "libdap-bin", "libdap-doc", "vistrails", "coda", "sasview", "gwyddion"], "ignore": [], "avoid": []}, "typesetting": {"depends": [], "suggests": ["tellico", "openoffice.org-dmaths", "r-cran-xtable", "r-cran-gridbase", "r-cran-highr", "r-cran-scatterd3", "r-cran-shape", "csv2latex", "libgtkmathview-bin", "svgtoipe", "xul-ext-zotero", "pymarc", "luasseq", "libqtexengine-dev"], "recommends": ["referencer", "kbibtex", "impose+", "pybliographer", "texlive-bibtex-extra", "jabref", "bibutils", "biber", "feynmf", "texlive", "texlive-science", "texlive-publishers", "texlive-math-extra", "diploma", "xfig", "transfig", "dia", "texmaker | kile | lyx | texmacs | auctex | vim-latexsuite | texstudio", "pandoc", "pandoc-citeproc", "r-cran-knitr", "bibus", "mlpost", "latexdiff", "libjlatexmath-java", "cb2bib", "jeuclid-mathviewer", "sketch", "ipe", "ipe5toxml", "quaneko", "gpapers", "zotero-standalone", "gummi", "sagetex", "pybtex", "python3-sphinxcontrib.bibtex", "python3-pybtex-docutils"], "ignore": [], "avoid": []}, "robotics": {"depends": [], "suggests": ["arduino-mk", "joint-state-publisher-gui", "ompl-demos", "libcoin-runtime", "vtk9", "octave", "gnuplot"], "recommends": ["rtai", "xenomai-runtime", "morse-simulator", "choreonoid", "liburdfdom-tools", "solid", "robot-player", "d-collide", "rtnet", "orca", "roboop", "orocos-rtt", "orocos-ocl", "ros-desktop-full", "ros-desktop", "ros-perception", "ros-simulators", "ros-robot", "ros-robot-state-publisher", "rosdiagnostic", "joint-state-publisher", "ros-opencv-apps", "openrtm", "openhrp", "gazebo9", "openrave", "octomap-tools", "octovis", "aseba"], "ignore": [], "avoid": []}, "engineering-dev": {"depends": [], "suggests": ["libgtkdatabox-dev", "libgtkdataboxmm-dev", "libqwt-dev | libqwt5-qt4-dev", "openturns-examples", "libdiet-sed2.8-dev", "libdiet-client2.8-dev", "libdiet-dagda2.8-dev", "libdiet-admin2.8-dev", "ceres-solver-doc"], "recommends": ["libalberta-dev", "code-saturne-bin", "code-saturne-include", "libcgns-dev", "libitpp-dev", "libadios-dev", "libbox-dev", "libsilo-dev", "libxdmf-dev", "libgetfem++-dev", "libhdf5-serial-dev", "libjhdf5-java", "libjhdf4-java", "libsis-jhdf5-java", "pycgns", "liboce-visualization-dev", "liboce-ocaf-dev", "libdeal.ii-dev", "libfeel++-dev", "libluminate-dev", "libopenturns-dev", "libmadlib-dev", "libtet1.4-dev", "libslepc3.4.2-dev", "libelmer-dev", "libug-dev", "libmed-dev", "libmedc-dev", "libmedimport-dev", "libnetcdf-dev", "python3-netcdf4", "r-cran-rnetcdf", "libnfft3-dev", "libnlopt-dev", "libcoin-dev", "libmetis-edf-dev", "libslicot-dev", "python3-collada", "libann-dev", "libflann-dev", "libdime-dev", "libdxflib-dev", "salome-kernel-dev", "python3-pynfft", "libplb-dev", "libceres-dev", "trilinos-all-dev", "libp4est-dev", "libgismo-dev", "python3-pygalmesh", "python3-fluids", "liblxi-dev", "python3-pyode"], "ignore": [], "avoid": []}, "highenergy-physics": {"depends": [], "suggests": ["paw-demos", "geant321-doc", "lhapdf-pdfsets-minimal", "root-system-doc"], "recommends": ["cernlib", "cernlib-base", "cernlib-core", "cernlib-extras", "dzedit", "kuipc", "kxterm", "nypatchy", "pawserv", "zftp", "paw", "paw++", "cernlib-montecarlo", "geant321", "feynmf", "looptools", "octave-lhapdf", "root-macro-fastjet", "pythia8-root-interface", "libroot-bindings-python5.34", "libroot-bindings-ruby5.34", "libroot-graf3d-gl5.34", "libroot-io-xmlparser5.34", "libroot-math-mathmore5.34", "libroot-math-unuran5.34", "libroot-misc-memstat5.34", "libroot-misc-table5.34", "libroot-net-bonjour5.34", "libroot-net-ldap5.34", "libroot-proof-clarens5.34", "libroot-roofit5.34", "libroot-geom5.34", "libroot-graf2d-gpad5.34", "libroot-graf2d-graf5.34", "libroot-graf2d-postscript5.34", "libroot-graf3d-eve5.34", "libroot-graf3d-g3d5.34", "libroot-gui5.34", "libroot-gui-ged5.34", "libroot-hist5.34", "libroot-hist-spectrum5.34", "libroot-html5.34", "libroot-io5.34", "libroot-math-foam5.34", "libroot-math-genvector5.34", "libroot-math-mathcore5.34", "libroot-math-matrix5.34", "libroot-math-minuit5.34", "libroot-math-mlp5.34", "libroot-math-physics5.34", "libroot-math-quadp5.34", "libroot-math-smatrix5.34", "libroot-math-splot5.34", "libroot-misc-minicern5.34", "libroot-montecarlo-eg5.34", "libroot-montecarlo-vmc5.34", "libroot-net5.34", "libroot-net-auth5.34", "libroot-proof5.34", "libroot-proof-proofplayer5.34", "libroot-tmva5.34", "libroot-tree5.34", "libroot-tree-treeplayer5.34", "libroot-core5.34", "root-plugin-graf2d-asimage", "root-plugin-geom-gdml", "root-plugin-gui-qt", "root-plugin-graf2d-qt", "root-plugin-math-fftw3", "root-plugin-math-minuit2", "root-plugin-montecarlo-pythia8", "root-plugin-net-globus", "root-plugin-net-krb5", "root-plugin-proof-peac", "root-plugin-sql-mysql", "root-plugin-sql-odbc", "root-plugin-sql-pgsql", "root-plugin-geom-geombuilder", "root-plugin-geom-geompainter", "root-plugin-graf2d-x11", "root-plugin-graf3d-x3d", "root-plugin-gui-fitpanel", "root-plugin-gui-guibuilder", "root-plugin-gui-sessionviewer", "root-plugin-hist-hbook", "root-plugin-hist-histpainter", "root-plugin-hist-spectrumpainter", "root-plugin-io-sql", "root-plugin-io-xml", "root-plugin-math-fumili", 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"recommends": ["octave", "python3-matplotlib", "python3-scipy", "ipython3", "python3-numpy", "spyder", "python3-guiqwt", "pdl", "gnudatalanguage", "scilab", "scilab-scimax", "scilab-swt", "scilab-ann", "freemat", "yorick", "r-base", "yade", "liggghts", "esys-particle", "python3-deap", "python3-lmfit", "python3-tables", "vitables", "lammps", "julia", "admesh", "metis", "libsundials-dev", "coinor-symphony", "coinor-cbc", "coinor-clp", "metis-edf", "libsuitesparse-dev", "libsuitesparse-metis-dev", "libdune-grid-dev", "libcolpack-dev", "libadolc-dev", "python3-csa", "algotutor", "iep", "calculix-ccx", "calculix-cgx", "python3-sfepy", "python3-bitstring", "easea", "geneva", "libclblas-dev", "libclfft-dev", "python3-pysph", "python3-woo", "libopengm-dev", "libceres-dev", "qsopt-ex", "libqsopt-ex-dev", "libarrayfire-unified-dev", "pyzo", "python3-arrayfire", "libclsparse-dev", "librsb-dev", "libppl-dev", "python3-escript | python3-escript-mpi", "python3-theano", "python3-sparse", "toulbar2", "xtensor-dev", "xtensor-python-dev", "python3-xarray", "python3-pydap", "r-cran-nleqslv", "libgismo-dev", "psurface", "python3-resampy"], "ignore": [], "avoid": []}, "robotics-dev": {"depends": [], "suggests": ["visp-images-data"], "recommends": ["libcv-dev", "libroboptim-core-dev", "libvisp-dev", "libcnoid-dev", "libode-dev", "libompl-dev", "liboctomap-dev", "libopenigtlink-dev", "liburdfdom-dev", "liburdfdom-headers-dev", "libslicot-dev", "libsdformat-dev", "libconsole-bridge-dev", "libcomedi-dev", "python3-comedilib", "libccd-dev", "libgazebo-dev", "libsimbody-dev", "libignition-cmake-dev", "libignition-common-dev", "libignition-fuel-tools-dev", "libignition-math-dev", "libignition-msgs-dev", "libignition-plugin-dev", "libignition-transport-dev", "libignition-utils-dev", "ignition-tools", "libdart-dev", "ros-desktop-full-dev", "ros-desktop-dev", "ros-perception-dev", "ros-simulators-dev", "ros-desktop-full-python-dev", "ros-desktop-full-lisp-dev", "ros-environment", "python3-tf2", "librosconsole-dev", "libkdl-parser-dev", "libpcl-dev", "libapriltag-dev", "libfcl-dev", "liborocos-bfl-dev", "liborocos-kdl-dev", "python3-catkin-lint", "librobottestingframework-dev"], "ignore": [], "avoid": []}, "nanoscale-physics": {"depends": [], "suggests": ["hdf5-helpers", "hdf5-tools", "netcdf-doc", "openmpi-doc | mpich-doc", "axiom", "maxima", "libgraphviz-perl", "python3-pygraphviz", "dx", "dxsamples", "dx-doc", "gpiv", "gpivtools", "feel++-apps", "pymca", "qtiplot", "scidavis", "science-statistics", "science-mathematics"], "recommends": ["abinit", "mpqc", "openmx", "psi3", "quantum-espresso", "drawxtl", "etsf-io", "feynmf", "fityk", "gnuplot", "grace", "libblas3", "liblapack3", "libgsl0ldbl", "gsl-bin", "netcdf-bin", "nco", "ncview", "openmpi-bin | mpich", "science-numericalcomputation", "avogadro", "garlic", "gdis", "ghemical", "v-sim", "gwyddion", "cadabra", "extrema", "ggobi", "mayavi2", "udav", "gperiodic", "graphviz", "python3-scipy", "python3-sympy", "pyxplot", "octave", "scilab", "cbflib-bin", "python3-lmfit", "binoculars", "cod-tools", "libssm-bin", "ape", "atompaw", "bigdft", "cp2k", "exciting", "gpaw", "octopus", "ase", "wannier90-1", "wannier90-2", "octaviz", "fdmnes", "liblevmar-2-6", "sasview"], "ignore": [], "avoid": []}, "meteorology-dev": {"depends": [], "suggests": ["udunits-bin", "libcblas-dev", "gfortran", "ksh", "pkg-config", "openturns-examples", "libfeel++-dev", "python3-coards"], "recommends": ["libemos-dev", "mpi-defaults-dev", "libcoarrays-dev", "libgadap-dev", "libcmor-dev", "libcdi-dev", "libeccodes-dev", "libeccodes-tools", "libgrib2c-dev", "libhe5-hdfeos-dev", "libhdfeos-dev", "libproj-dev", "libgctp-dev", "libnetcdf-dev", "netcdf-bin", "r-cran-rnetcdf", "liblapack-dev", "libblas-dev", "libfftw3-dev", "fftw-dev", "sfftw-dev", "python3-gpyfft", "liblapack-doc", "libfftw3-doc", "liblas-dev", "libsphere-dev", "libterralib-dev", "libmagics++-dev", "libaec-dev", "liboasis3-dev", "libudunits2-dev", "libdap-dev", "libncarg-bin", "python3-openturns", "libopenturns-dev", "wcslib-dev", "wcslib-doc", "librsl-dev", "libwreport-dev", "python3-ulmo", "libcoda-dev", "libcoda-java", "python3-coda", "python3-sasmodels"], "ignore": [], "avoid": []}, "tools": {"depends": [], "suggests": ["libmrmpi-dev", "libmemtailor-dev", "python3-pydap", "python3-pweave"], "recommends": ["openstereogram", "xoscope", "python3-h5py", "python3-hdf5storage", "science-workflow", "hdf-compass", "python3-pybind11", "python3-h5netcdf", "reprozip", "reprounzip"], "ignore": [], "avoid": []}, "physics": {"depends": [], "suggests": ["paw-demos", "science-statistics", "science-mathematics", "openctm-tools", "feel++-apps", "evolver-ogl | evolver-nox"], "recommends": ["cernlib", "geant321", "paw++", "paw", "gpaw", "clhep", "geant4", "abinit | mpqc | openmx | psi3", "gerris", "feynmf", "openfoam", "fityk", "tessa | tessa-mpi", "science-numericalcomputation", "oce-draw", "science-electronics", "v-sim", "gpiv", "gpivtools", "maxima", "python3-sympy", "axiom", "meshlab", "cadabra", "drawxtl", "opticalraytracer", "ghkl", "python3-deap", "etsf-io", "pymca", "quantum-espresso", "gwyddion", "blzpack", "gate", "jfreemesh", "spis", "espresso++", "cp2k", "octaviz", "root-system", "libroot-tmva-dev", "libroot-montecarlo-vmc-dev", "libroot-math-mlp-dev", "fdmnes", "pyfr", "toulbar2"], "ignore": [], "avoid": []}, "datamanagement": {"depends": [], "suggests": [], "recommends": ["git-annex", "datalad", "datalad-container"], "ignore": [], "avoid": []}, "bci": {"depends": [], "suggests": ["pyff", "pybci", "bcpy2000", "bci2000", "emokit", "openvibe"], "recommends": [], "ignore": [], "avoid": []}, "imageanalysis": {"depends": [], "suggests": [], "recommends": ["gpivtools", "gpiv", "gwyddion", "teem-apps", "limereg"], "ignore": [], "avoid": []}, "devices": {"depends": [], "suggests": ["libticables-dev", "libticalcs-dev", "libticonv-dev", "libtifiles-dev"], "recommends": ["expeyes", "gfm", "tiemu", "tilem", "tilp2", "bossa", "bossa-cli"], "ignore": [], "avoid": []}, "mathematics": {"depends": [], "suggests": ["gap-online-help", "gap-gapdoc", "gap-io", "gap-scscp", "netgen-doc", "r-cran-evd", "sagetex", "matlab-support", "ann-tools", "gmp-ecm", "primesieve", "evolver-ogl | evolver-nox", "libspectra-dev"], "recommends": ["axiom", "ginac-tools", "xmaxima", "wxmaxima", "pari-gp", "pari-extra", "gap", "magnus", "gap-small-groups-extra", "gap-trans-groups", "gap-prim-groups", "gap-small-groups", "gap-table-of-marks", "gap-guava", "gap-character-tables", "gap-float", "gap-design", "gap-factint", "gap-laguna", "gap-sonata", "gap-toric", "gap-openmath", "gap-grape", "gerris", "freefem", "freefem3d", "freefem++", "netgen", "gmsh", "getdp", "coq", "proofgeneral", "proofgeneral-coq", "matita", "agda", "prover9", "hol-light", "minisat", "science-statistics", "geomview", "octave", "xmds", "xmds2", "freemat", "mathomatic", "scilab", "scilab-scimax", "scilab-ann", "regina-normal", "snappea", "lp-solve", "qsopt-ex", "libmatheval1", "mumps-test", "nauty", "geogebra", "lrslib", "fenics", "python3-dolfin", "python3-ffc", "python3-ufl", "kseg", "polylib-utils", "rheolef", "scotch", "isabelle", "bliss", "python3-openturns", "python3-deap", "mcl", "sagemath", "maxima-sage", "sagemath-database-conway-polynomials", "sagemath-database-elliptic-curves", "sagemath-database-graphs", "sagemath-database-mutually-combinatorial-designs", "sagemath-database-polytopes", "python3-sagenb-export", "eclib-tools", "gfan", "lcalc", "fplll-tools", "lrcalc", "palp", "sympow", "tachyon", "4ti2", "normaliz", "surf-alggeo", "graphviz", "singular", "julia", "qhull-bin", "mathicgb", "frobby", "geneagrapher", "planarity", "flintqs", "rubiks", "coinor-csdp", "topcom", "macaulay2", "qepcad", "phcpack", "octaviz", "eprover", "python3-minieigen", "coinor-symphony", "coinor-cbc", "tetgen", "feel++-apps", "auto-07p", "toulbar2", "cohomcalg", "cryptominisat", "form", "xcas", "pyomo", "model-builder", "libjgrapht-java"], "ignore": [], "avoid": []}, "neuroscience-modeling": {"depends": [], "suggests": ["python3-pynn", "moose", "pcsim", "nest", "invt", "xppaut"], "recommends": ["python3-brian", "cnrun", "neuron"], "ignore": [], "avoid": []}, "nanoscale-physics-dev": {"depends": [], "suggests": ["libcblas-dev", "libfftw3-doc", "libfeel++-dev", "oce-draw", "python3-netcdf4", "python3-h5py"], "recommends": ["abinit-doc", "libblas-dev", "liblapack-dev", "liblapack-doc", "libetsf-io-dev", "libetsf-io-doc", "libfftw3-dev", "python3-gpyfft", "libgsl0-dev", "gsl-bin", "gsl-doc-info", "gsl-ref-html | gsl-ref-psdoc", "libnetcdf-dev", "netcdf-doc", "r-cran-rnetcdf", "libhdf5-dev", "libsis-jhdf5-java", "libxc-dev", "libopenmpi-dev | libmpich-dev", "wannier90-1-dev", "gsl-doc-pdf", "libscalapack-mpi-dev", "scalapack-doc", "science-mathematics-dev", "liboce-visualization-dev", "liboce-ocaf-dev", "libpspio-dev", "libsymspg-dev", "root-system", "libroot-tmva-dev", "libroot-montecarlo-vmc-dev", "libroot-math-mlp-dev", "python3-fabio", "libcbf-dev", "pyfai", "libssm-dev", "libclipper-dev", "python3-binoculars", "python3-pycodcif", "libcod-precision-perl", "libcexceptions-dev", "libccp4-dev", "python3-periodictable", "libxc-dev", "python3-sasmodels"], "ignore": [], "avoid": []}, "social": {"depends": [], "suggests": [], "recommends": ["opensesame"], "ignore": [], "avoid": []}, "electrophysiology": {"depends": [], "suggests": ["science-neuroscience-modeling", "science-dataacquisition", "spike", "klustakwik", "neurodata", "qrtailab", "stimfit", "trellis-neuro", "relacs", "chronus", "libbiosig-dev", "nspike", "rtxi", "bluespike", "meabench", "mclust", "neo", "python3-neo", "pymeg", "libxdffileio-dev", "librtfilter-dev", "libeegdev-dev", "libmcpanel-dev", "eegview", "aghermann", "eeglab", "patchclamp", "spykeview"], "recommends": ["openelectrophy", "libgdf-dev", "sigviewer", "libdrawtk-dev"], "ignore": [], "avoid": []}, "chemistry": {"depends": [], "suggests": ["gdpc-examples", "python-pymzml-doc", "python3-periodictable", "libschroedinger-coordgenlibs-dev"], "recommends": ["apbs", "bkchem", "bodr", "libcdk-java", "chemeq", "chemical-mime-data", "chemtool", "easychem", "gabedit", "galculator", "garlic", "gausssum", "gchempaint", "gdis", "ghemical", "gcrystal", "gcu-bin", "gcu-plugin", "gperiodic", "gromacs | gromacs-mpich | gromacs-openmpi", "kalzium", "katomic", "mopac7-bin", "mpqc", "mpqc-support", "openbabel", "psi3", "pymol", "viewmol", "xdrawchem", "xmakemol-gl | xmakemol", "v-sim", "python3-openbabel", "rasmol", "adun.app", "gdpc", "xbs", "gelemental", "avogadro", "gamgi", "msxpertsuite", "drawxtl", "chemical-structures", "openfoam", "pyfai", "libegad", "libint", "molden", "molekel", "tinker", "jmol", "qutemol", "cp2k", "pdb2pqr", "mmass", "mmass-modules", "python3-pymzml", "tandem-mass", "openchrom", "fdmnes"], "ignore": [], "avoid": []}, "presentation": {"depends": [], "suggests": [], "recommends": ["dspdfviewer", "pdf-presenter-console", "zathura", "texlive-latex-extra", "texlive-publishers"], "ignore": [], "avoid": []}, "machine-learning": {"depends": [], "suggests": ["libmkldnn-dev", "science-statistics", "science-numericalcomputation", "libacovea-dev", "science-typesetting", "ask", "libdlib-dev", "python3-hdmedians", "libfclib-dev", "libxsmm-dev", "libxgboost-predictor-java"], "recommends": ["gprolog", "yap", "libtorch3-dev", "libshogun-dev", "libfann-dev", "libsvm-dev", "libcomplearn-dev", "libqsearch-dev", "liblinear-dev", "libocas-dev", "python3-sklearn", "python3-mdp", "python3-mlpy", "weka", "vowpal-wabbit", "r-cran-mass", "r-cran-bayesm", "r-cran-class", "r-cran-cluster", "r-cran-msm", "r-cran-mcmcpack", "r-cran-mnp", "r-cran-amore", "r-cran-gbm", "r-cran-tgp", "python3-statsmodels", "root-system", "libroot-tmva-dev", "libroot-montecarlo-vmc-dev", "libroot-math-mlp-dev", "autoclass", "mcl", "scilab-ann", "libga-dev", "libevocosm-dev", "pgapack", "octave-ga", "python3-genetic", "flann", "torch-core-free", "lua-torch-nn", "lua-torch-nngraph", "lua-torch-xlua", "lua-torch-trepl", "lua-torch-graph", "lua-torch-optim", "lua-torch-image", "libcv-dev", "python3-opencv", "libvigraimpex-dev", "python3-vigra", "pybrain", "libshark-dev", "python3-orange", "r-cran-mlbench", "caffe-cpu | caffe-cuda", "torch-core-free", "libmlpack-dev", "toulbar2", "r-cran-metrics", "r-cran-mlr", "spacy", "python3-thinc", "python3-amp", "python3-keras", "python3-lasagne", "streamlit"], "ignore": [], "avoid": []}, "linguistics": {"depends": [], "suggests": ["libticcutils2-dev", "frogdata", "libtimbl3-dev", "libtimbl4-dev", "libtimblserver2-dev", "libmbt0-dev", "libucto1-dev", "libfolia-dev", "wnsqlbuilder", "python3-nltk", "apertium-af-nl", "apertium-apy", "apertium-arg", "apertium-arg-cat", "apertium-bel", "apertium-bel-rus", "apertium-br-fr", "apertium-ca-it", "apertium-cat", "apertium-cat-srd", "apertium-crh", "apertium-crh-tur", "apertium-cy-en", "apertium-dan", "apertium-dan-nor", "apertium-en-ca", "apertium-en-es", "apertium-en-gl", "apertium-eo-ca", "apertium-eo-en", "apertium-eo-es", "apertium-eo-fr", "apertium-es-ast", "apertium-es-ca", "apertium-es-gl", "apertium-es-it", "apertium-es-pt", "apertium-es-ro", "apertium-eu-en", "apertium-eu-es", "apertium-fra", "apertium-fra-cat", "apertium-fr-ca", "apertium-fr-es", "apertium-hbs", "apertium-hbs-eng", "apertium-hbs-mkd", "apertium-hbs-slv", "apertium-hin", "apertium-id-ms", "apertium-isl", "apertium-isl-eng", "apertium-is-sv", "apertium-ita", "apertium-kaz", "apertium-kaz-tat", "apertium-mk-bg", "apertium-mk-en", "apertium-mlt-ara", "apertium-nno", "apertium-nno-nob", "apertium-nob", "apertium-oc-ca", "apertium-oc-es", "apertium-oci", "apertium-pol", "apertium-pt-ca", "apertium-pt-gl", "apertium-rus", "apertium-separable", "apertium-sme-nob", "apertium-spa", "apertium-spa-arg", "apertium-srd", "apertium-srd-ita", "apertium-swe", "apertium-swe-dan", "apertium-swe-nor", "apertium-szl", "apertium-tat", "apertium-tur", "apertium-ukr", "apertium-urd", "apertium-urd-hin", "python3-streamparser", "libcg3-dev", "r-cran-nlp", "r-cran-tm", "python3-snowballstemmer"], "recommends": ["wordnet", "apertium", "apertium-lex-tools", "link-grammar", "artha", "sequitur-g2p", "timbl", "timblserver", "mbt", "mbtserver", "ucto", "dimbl", "frog", "collatinus", "python3-timbl", "travatar", "cg3", "libcld2-dev", "python3-pynlpl", "uctodata", "giella-sme", "hfst", "hfst-ospell", "lttoolbox", "r-cran-snowballc", "r-cran-lexrankr", "spacy", "python3-thinc", "irstlm"], "ignore": [], "avoid": []}}
\ No newline at end of file
=====================================
tasks/robotics
=====================================
@@ -153,7 +153,7 @@ Pkg-Description: OpenRAVE robotics platform
Suggests: ompl-demos
WNPP: 706133
-Suggests: libcoin-runtime, vtk7
+Suggests: libcoin-runtime, vtk9
Suggests: octave, gnuplot
=====================================
tasks/viewing
=====================================
@@ -119,7 +119,7 @@ Recommends: python3-gnuplot
Suggests: libcoin-dev, libsoqt520-dev
-Suggests: libvtk7-dev, libvtk7-qt-dev, tcl-vtk7, python3-vtk7, libvtk7-java, vtk7-examples
+Suggests: libvtk9-dev, libvtk9-qt-dev, python3-vtk9, libvtk9-java, vtk9-examples
Suggests: python3-pivy
=====================================
tasks/viewing-dev
=====================================
@@ -21,7 +21,7 @@ Recommends: python3-gnuplotlib
Recommends: libcoin-dev, libsoqt520-dev
-Recommends: libvtk7-qt-dev, libvtk7-dev, tcl-vtk7, python3-vtk7, libvtk7-java, vtk7-examples
+Recommends: libvtk9-dev, libvtk9-qt-dev, python3-vtk9, libvtk9-java, vtk9-examples
Recommends: python3-pivy
View it on GitLab: https://salsa.debian.org/blends-team/science/-/compare/f2a9ae63c70cc3d2252677eda1957c0f712886f3...1d8ded781ad9d2abf7c5ff4f1482ff6802b4051d
--
View it on GitLab: https://salsa.debian.org/blends-team/science/-/compare/f2a9ae63c70cc3d2252677eda1957c0f712886f3...1d8ded781ad9d2abf7c5ff4f1482ff6802b4051d
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