[Blends-commit] [Git][blends-team/med][master] 2 commits: Add muscle3 to tasks

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Blends Team / med


Commits:
bc3ae844 by Andreas Tille at 2023-01-12T09:09:38+01:00
Add muscle3 to tasks

- - - - -
34e2039d by Andreas Tille at 2023-01-12T09:09:38+01:00
Add libbiojava6-java

- - - - -


5 changed files:

- tasks/bio
- tasks/bio-dev
- tasks/bio-phylogeny
- tasks/cloud
- tasks/covid-19


Changes:

=====================================
tasks/bio
=====================================
@@ -48,7 +48,7 @@ Remark: Dead upstream
  
 Suggests: conda-package-handling
 
-Recommends:     boxshade, gff2aplot, muscle, sim4, sibsim4, tabix, wise
+Recommends:     boxshade, gff2aplot, muscle, muscle3, sim4, sibsim4, tabix, wise
 
 Recommends: maqview
 


=====================================
tasks/bio-dev
=====================================
@@ -40,7 +40,7 @@ Recommends: python3-tinyalign
 
 Recommends: ruby-bio
 
-Recommends: libbiojava-java, libbiojava4-java, libbiojava5-java
+Recommends: libbiojava-java, libbiojava4-java, libbiojava5-java, libbiojava6-java
 
 Recommends: libgenome-dev, libmuscle-dev, libmems-dev
 


=====================================
tasks/bio-phylogeny
=====================================
@@ -29,7 +29,7 @@ X-Comment: treetool is removed from Debian because it is not maintained upstream
 
 X-Begin-Category: Sequence alignments and related programs.
 
-Recommends:     muscle
+Recommends:     muscle, muscle3
 
 Recommends: t-coffee
 


=====================================
tasks/cloud
=====================================
@@ -20,7 +20,7 @@ Recommends: amap-align, blast2, biosquid, boxshade, cassiopee, cdbfasta,
             cd-hit, clustalo, clustalw, conservation-code, dialign, dialign-tx,
             emboss, embassy-domalign, embassy-domainatrix, embassy-domsearch,
             embassy-phylip, exonerate, gff2aplot, gff2ps, glam2, gmap, hmmer,
-            jellyfish, kalign, mafft, mlv-smile, mummer, muscle, neobio, poa,
+            jellyfish, kalign, mafft, mlv-smile, mummer, muscle, muscle3, neobio, poa,
             prank, probcons, proda, sibsim4, sigma-align, sim4, snap,
             squizz, t-coffee, wise
 X-End-Category: Sequence alignments and related programs.


=====================================
tasks/covid-19
=====================================
@@ -192,7 +192,7 @@ Recommends: porechop
 
 Recommends: changeo
 
-Recommends: muscle
+Recommends: muscle, muscle3
 
 Recommends: plasmidid
 



View it on GitLab: https://salsa.debian.org/blends-team/med/-/compare/1392694949d36956a79743ef1caa7cd071f3f593...34e2039de3df20241025fc6097a21b338275abd8

-- 
View it on GitLab: https://salsa.debian.org/blends-team/med/-/compare/1392694949d36956a79743ef1caa7cd071f3f593...34e2039de3df20241025fc6097a21b338275abd8
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