[Blends-commit] [Git][blends-team/science][master] 4 commits: Standards-Version: 4.6.2
Andreas Tille (@tille)
gitlab at salsa.debian.org
Thu Mar 2 19:49:14 GMT 2023
Andreas Tille pushed to branch master at Debian Blends Team / science
Commits:
01412e77 by Andreas Tille at 2023-03-02T19:27:42+01:00
Standards-Version: 4.6.2
- - - - -
a1b8cf9a by Andreas Tille at 2023-03-02T20:29:03+01:00
Re-render dependencies
- - - - -
1723ed81 by Andreas Tille at 2023-03-02T20:47:00+01:00
Update changelog
- - - - -
03fae6b5 by Andreas Tille at 2023-03-02T20:48:14+01:00
Upload to unstable
- - - - -
4 changed files:
- debian/changelog
- debian/control
- debian/control.stub
- + dependency_data/debian-science_1.14.4.json
Changes:
=====================================
debian/changelog
=====================================
@@ -1,9 +1,246 @@
-debian-science (1.14.4) UNRELEASED; urgency=medium
+debian-science (1.14.4) unstable; urgency=medium
[ Alastair McKinstry ]
* Update meteorology, meteorology-dev with new ECMWF packages
- -- Alastair McKinstry <mckinstry at debian.org> Tue, 03 Jan 2023 10:51:52 +0000
+ [ Andreas Tille ]
+ * Standards-Version: 4.6.2
+ * Check all tasks for missing, renamed and removed packages
+
+ * start of automatic changelog entry *
+
+ * Changes in metapackage dependencies
+ -science-biology
+ added:
+ Recommends: nrn-mod2c, nmodl
+ Suggests: siconos-mechanics-tools, siconos, libinterviews-dev,
+ python3-nmodl
+ removed:
+ Recommends: avida-base
+ -science-chemistry
+ added:
+ Recommends: python3-mpiplus, feff85exafs
+ Suggests: libmaeparser-dev, libcoordgen-dev, refmac-dictionary,
+ python3-amp
+ -science-dataacquisition
+ added:
+ Recommends: open3d-tools, open3d-gui
+ removed:
+ Recommends: ktimetrace, narval-utils
+ Suggests: comedi-source, rtai
+ -science-dataacquisition-dev
+ added:
+ Recommends: libopen3d-dev, mseed2sac, python3-datacache,
+ python3-tango, python3-open3d
+ Suggests: libbcm2835-dev, python3-asciitree
+ removed:
+ Recommends: libnarval1-dev
+ -science-datamanagement
+ added:
+ Recommends: python3-jdata, python3-nxs, nexus-tools,
+ hdf5-filter-plugin-blosc-serial, hdf5-filter-plugin,
+ python3-pyzoltan, plfit, virtuoso-opensource,
+ hdf5-filter-plugin-zfp-serial
+ Suggests: python3-openpyxl, libnexus-dev, python3-opentsne,
+ libnexus-java, libplfit-dev, python3-plfit
+ -science-distributedcomputing
+ added:
+ Recommends: nordugrid-arc-client
+ removed:
+ Recommends: nordugrid-arc-nox
+ -science-electrophysiology
+ added:
+ Suggests: python3-bioxtasraw
+ -science-engineering
+ added:
+ Recommends: persalys, python3-persalys
+ removed:
+ Recommends: ecs
+ -science-engineering-dev
+ added:
+ Recommends: libbasix-dev, libtet1.5-dev, libdolfinx-dev,
+ python3-dolfinx, python3-ffcx, python3-basix
+ removed:
+ Recommends: libtet1.4-dev
+ -science-geography
+ added:
+ Recommends: python3-spaghetti
+ removed:
+ Recommends: gpsdrive, drawmap, openjump
+ -science-geometry
+ added:
+ Recommends: python3-gengeo
+ Suggests: python3-opengv, libopengv-dev
+ -science-highenergy-physics
+ added:
+ Recommends: dials, sdpb
+ removed:
+ Recommends: libroot-proof-clarens5.34, root-plugin-proof-peac
+ -science-highenergy-physics-dev
+ added:
+ Recommends: python3-mpiplus, libmctc-lib-dev, libkim-api-dev,
+ python3-pymbar, libncrystal-dev, libhepmc3-dev,
+ libmmdb2-dev, python3-dials
+ Suggests: refmac-dictionary
+ removed:
+ Recommends: libroot-proof-clarens-dev
+ -science-imageanalysis
+ added:
+ Recommends: libcvd-tools
+ -science-imageanalysis-dev
+ added:
+ Recommends: libcvd-dev
+ -science-linguistics
+ added:
+ Recommends: opennlp, fasttext, sentencepiece, apertium-eval-translator
+ Suggests: libmbt-dev, python3-fasttext, apertium-pol-szl,
+ python3-sentencepiece, libapache-opennlp-java,
+ libtimblserver-dev, libopennlp-maxent-java, python3-gensim,
+ libfasttext-dev, tfdocgen, libticcutils-dev, libtimbl-dev,
+ libsentencepiece-dev, libucto-dev
+ removed:
+ Suggests: libmbt0-dev, libtimbl3-dev, libtimblserver2-dev, libtimbl4-dev,
+ libucto1-dev
+ -science-machine-learning
+ added:
+ Recommends: mrgingham, python3-torch, python3-torch-sparse, python3-fann2
+ Suggests: python3-mrgingham, libdlpack-dev, python3-imblearn,
+ libfannj-java, libmrgingham-dev, python3-liac-arff
+ removed:
+ Recommends: libcomplearn-dev, libqsearch-dev
+ Suggests: libacovea-dev
+ -science-mathematics
+ added:
+ Recommends: sagemath-database-cremona-elliptic-curves, persalys,
+ python3-persalys, coinor-libbonmin-dev
+ removed:
+ Recommends: kseg, pari-extra, proofgeneral-coq, scilab-scimax
+ -science-mathematics-dev
+ added:
+ Recommends: python3-pyemd, python3-dmsh, python3-mpi4py-fft, libmagma-dev,
+ python3-meshplex, libsuperlu-dist-dev, libbasix-dev,
+ libspfft-dev, libdolfinx-dev, python3-ortools,
+ python3-dolfinx, python3-ffcx, libortools-dev,
+ libmeschach-dev, python3-cython-blis, python3-meshzoo,
+ python3-pyfftw, libopenmesh-dev, libmeshsdfilter-dev,
+ python3-amgcl, libsleef-dev, python3-morfessor, python3-basix,
+ libflame-dev, python3-swiglpk, libamgcl-dev
+ Suggests: libtet1.5-dev, python3-threadpoolctl, libbdd-dev
+ removed:
+ Recommends: libtet1.4-dev
+ Suggests: libtet1.4.2-dev, libtrilinos-dev
+ -science-meteorology
+ added:
+ Recommends: cylc-flow, libmetkit-utils, libaec-tools, python3-magics++,
+ libatlas-ecmwf-utils, libfckit-utils, odc, fpzip-utils,
+ mbdyn, libeckit-utils
+ removed:
+ Recommends: fcm, vistrails, makedepf90, sasview, ecaccess, gwyddion, cylc
+ -science-meteorology-dev
+ added:
+ Recommends: fcm, python3-pyswarms, libspfft-dev, libeckit-dev,
+ python3-pyfftw, python3-esda, libmbc-dev, ecbuild,
+ libfckit-dev, libmetkit-dev, mpi-defaults, libatlas-ecmwf-dev,
+ makedepf90, libfpzip-dev, libodc-dev
+ Suggests: python3-threadpoolctl
+ removed:
+ Recommends: mpi-defaults-dev
+ -science-nanoscale-physics
+ added:
+ Recommends: cif-linguist, nexus-tools, finalcif, openkim-models
+ removed:
+ Recommends: extrema
+ -science-nanoscale-physics-dev
+ added:
+ Recommends: libmctc-lib-dev, libcoordgen-dev, libspfft-dev,
+ python3-sasdata, libkim-api-dev, python3-qutip, libnexus-dev,
+ python3-nxs, python3-pyfftw, libncrystal-dev, libhepmc3-dev,
+ libmmdb2-dev, libnexus-java, libcctbx-dev, libmaeparser-dev,
+ python3-cif2cell, python3-cctbx
+ Suggests: python3-threadpoolctl
+ -science-neuroscience-cognitive
+ added:
+ Recommends: python3-pyxnat
+ Suggests: python3-bioxtasraw
+ removed:
+ Recommends: openwalnut-qt4
+ -science-numericalcomputation
+ added:
+ Recommends: python3-pyswarms, python3-rioxarray, libtoontag-dev,
+ libtoon-dev, python3-ppl, sdpb, libsleef-dev
+ Suggests: python3-lazyarray, python3-threadpoolctl,
+ python3-spyder-kernels, liblbfgspp-dev, python3-libpysal,
+ libcubature-dev, libcppnumericalsolvers-dev, libmagma-dev
+ removed:
+ Recommends: scilab-scimax, scilab-swt
+ Suggests: libscirenderer-java, scilab-metanet, scilab-jims
+ -science-physics
+ added:
+ Recommends: siconos, siconos-mechanics-tools
+ -science-physics-dev
+ added:
+ Recommends: python3-meshplex, libfclib-dev, libbasix-dev, libspfft-dev,
+ python3-meshzoo, libdolfinx-dev, python3-pyfftw,
+ python3-dmsh, python3-dolfinx, python3-ffcx, python3-basix
+ Suggests: libopm-simulators-dev, libopm-common-dev,
+ python3-opm-simulators, libopm-upscaling-dev, libopm-grid-dev,
+ python3-opm-common, libopm-material-dev, libopm-models-dev
+ -science-robotics
+ added:
+ Recommends: pcl-ros-tools, ros-camera-calibration, catkin-tools,
+ collada-urdf-tools, mrgingham, catkin-lint, jskeus
+ Suggests: arduino-ctags
+ removed:
+ Recommends: rtai
+ -science-robotics-dev
+ added:
+ Recommends: python3-meshplex, python3-osrf-pycommon, python3-meshzoo,
+ libpcl-ros-dev, liburdf-dev, jskeus-dev, python3-dmsh,
+ libelas-dev, libignition-common3-core-dev, vcstool
+ Suggests: libmrgingham-dev, python3-mrgingham
+ -science-simulations
+ added:
+ Recommends: tkgate, libopm-grid-bin, python3-qutip,
+ siconos-mechanics-tools, libopm-upscaling-bin, siconos,
+ libopm-simulators-bin, mbpoll, libopm-common-bin
+ Suggests: python3-pyswarms, libopm-simulators-dev,
+ python3-opm-simulators, libopm-upscaling-dev,
+ libopm-common-dev, libopm-grid-dev, python3-opm-common,
+ libopm-material-dev, libopm-models-dev
+ removed:
+ Recommends: radiance
+ -science-statistics
+ added:
+ Recommends: persalys, python3-persalys
+ Suggests: python3-leidenalg, python3-pynndescent, libicb-utils-java
+ -science-tools
+ added:
+ Recommends: mrcal, python3-hdf5plugin
+ Suggests: tiemu-skinedit, spacenavd, libmrcal-dev, python3-mrcal,
+ python3-opcodes
+ -science-typesetting
+ added:
+ Recommends: texmaker, auctex, texmacs, kile, lyx, setzer, texstudio,
+ vim-latexsuite
+ Suggests: libreoffice-dmaths
+ removed:
+ Recommends: texmaker | kile | lyx | texmacs | auctex | vim-latexsuite |
+ texstudio
+ Suggests: openoffice.org-dmaths
+ -science-viewing
+ added:
+ Recommends: open3d-tools, open3d-gui, camv-rnd
+ removed:
+ Suggests: worldwind
+ -science-viewing-dev
+ added:
+ Recommends: python3-symfit, python3-open3d, libopen3d-dev
+ Suggests: python3-opentsne
+ -science-workflow
+ added:
+ Recommends: capsule-nextflow
+
+ -- Andreas Tille <tille at debian.org> Thu, 02 Mar 2023 20:47:09 +0100
debian-science (1.14.3) unstable; urgency=medium
=====================================
debian/control
=====================================
@@ -7,7 +7,7 @@ Uploaders: Andreas Tille <tille at debian.org>,
Ole Streicher <olebole at debian.org>
Build-Depends-Indep: blends-dev (>= 0.7.5~)
Build-Depends: debhelper-compat (= 13)
-Standards-Version: 4.6.1
+Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/blends-team/science
Vcs-Git: https://salsa.debian.org/blends-team/science.git
Homepage: https://wiki.debian.org/DebianScience/
@@ -163,11 +163,16 @@ Depends: ${misc:Depends},
science-config (= ${source:Version}),
science-tasks (= ${source:Version})
Recommends: critterding,
- med-bio
-Suggests: avida-base,
- bauble,
+ med-bio,
+ nmodl,
+ nrn-mod2c
+Suggests: bauble,
genesis,
- med-bio-dev
+ libinterviews-dev,
+ med-bio-dev,
+ python3-nmodl,
+ siconos,
+ siconos-mechanics-tools
Description: Debian Science Biology packages
This metapackage will install Debian Science packages related to
Biology. You might also be interested in the field::biology debtag.
@@ -195,7 +200,9 @@ Recommends: adun.app,
chemical-structures,
chemtool,
cp2k,
+ drawxtl,
easychem,
+ feff85exafs,
gabedit,
galculator,
gamgi,
@@ -207,6 +214,7 @@ Recommends: adun.app,
gdis,
gdpc,
gelemental,
+ ghemical,
gperiodic,
gromacs,
jmol,
@@ -214,13 +222,17 @@ Recommends: adun.app,
katomic,
libcdk-java,
mopac7-bin,
+ mpqc,
+ mpqc-support,
openbabel,
openfoam,
pdb2pqr,
psi3,
pyfai,
pymol,
+ python3-mpiplus,
python3-openbabel,
+ python3-pymzml,
qutemol,
rasmol,
tandem-mass,
@@ -228,25 +240,25 @@ Recommends: adun.app,
xbs,
xdrawchem,
xmakemol-gl | xmakemol
-Suggests: drawxtl,
- fdmnes,
+Suggests: fdmnes,
gcu-plugin,
gdpc-examples,
- ghemical,
gromacs-mpich | gromacs-openmpi,
+ libcoordgen-dev,
libegad,
libint,
+ libmaeparser-dev,
libschroedinger-coordgenlibs-dev,
mmass,
mmass-modules,
molden,
molekel,
- mpqc,
- mpqc-support,
+ msxpertsuite,
openchrom,
python-pymzml-doc,
+ python3-amp,
python3-periodictable,
- python3-pymzml,
+ refmac-dictionary,
tinker,
viewmol
Description: Debian Science Chemistry packages
@@ -261,40 +273,38 @@ Architecture: all
Depends: ${misc:Depends},
science-config (= ${source:Version}),
science-tasks (= ${source:Version})
-Recommends: csvkit,
+Recommends: clickhouse-tools,
+ csvkit,
engauge-digitizer,
filo,
+ g3data,
ghkl,
jaaa,
libfreenect-dev,
libgetdata-tools,
lxi-tools,
netcdf-bin,
+ open3d-gui,
+ open3d-tools,
python3-pyvisa,
+ python3-sardana,
segyio-bin,
xlsx2csv,
xyscan
Suggests: binoculars,
- clickhouse-tools,
- comedi-source,
epics,
- g3data,
gnudatalanguage,
gpsd,
hart,
- ktimetrace,
linux-image-2.6-rt,
mx-dataacquisition,
- narval-utils,
opendap,
plot-digitizer,
python3-pytango,
- python3-sardana,
python3-streamz,
python3-taurus,
qtdmm,
rt-tests,
- rtai,
tango-accesscontrol,
tango-db,
tango-starter,
@@ -314,19 +324,25 @@ Recommends: libgetdata-dev,
libgetdata-perl,
liblog4tango-dev,
liblxi-dev,
+ libopen3d-dev,
libopenrefine-arithcode-java,
libopenrefine-vicino-java,
libsdsl-dev,
libtango-dev,
+ mseed2sac,
python3-aws-xray-sdk,
python3-csvkit,
+ python3-datacache,
python3-guidata,
+ python3-intake,
+ python3-open3d,
python3-pygetdata,
python3-pymeasure,
python3-segyio,
+ python3-tango,
python3-xrayutilities
-Suggests: libnarval1-dev,
- python3-intake,
+Suggests: libbcm2835-dev,
+ python3-asciitree,
r-cran-mi,
r-cran-ncdf4
Description: Debian Science data acquisition development packages
@@ -342,7 +358,22 @@ Depends: ${misc:Depends},
science-tasks (= ${source:Version})
Recommends: datalad,
datalad-container,
- git-annex
+ git-annex,
+ hdf5-filter-plugin,
+ hdf5-filter-plugin-blosc-serial,
+ hdf5-filter-plugin-zfp-serial,
+ nexus-tools,
+ plfit,
+ python3-jdata,
+ python3-nxs,
+ python3-pyzoltan,
+ virtuoso-opensource
+Suggests: libnexus-dev,
+ libnexus-java,
+ libplfit-dev,
+ python3-openpyxl,
+ python3-opentsne,
+ python3-plfit
Description: Debian Science Data Management packages
This metapackage will install packages to assist with data management
tasks, such as obtaining data from remote resources, keeping data
@@ -361,6 +392,7 @@ Recommends: environment-modules,
gridengine-qmon,
ipython3,
mpich,
+ nordugrid-arc-client,
openmpi-bin
Suggests: coop-computing-tools,
dmtcp,
@@ -368,7 +400,6 @@ Suggests: coop-computing-tools,
hpcc,
htcondor,
mpich2python,
- nordugrid-arc-nox,
octave-mpi,
openmpipython,
psom,
@@ -468,7 +499,9 @@ Suggests: aghermann,
neurodata,
nspike,
openelectrophy,
+ patchclamp,
pymeg,
+ python3-bioxtasraw,
python3-neo,
qrtailab,
relacs,
@@ -476,6 +509,7 @@ Suggests: aghermann,
science-dataacquisition,
science-neuroscience-modeling,
spike,
+ spykeview,
stimfit,
trellis-neuro
Description: Debian Science packages for Electrophysiology
@@ -501,6 +535,7 @@ Recommends: calculix-ccx,
code-saturne,
dime,
fenics,
+ freecad,
gerris,
getdp,
gmsh,
@@ -511,11 +546,13 @@ Recommends: calculix-ccx,
netgen,
oce-draw,
openfoam,
+ persalys,
python3-admesh,
python3-dolfin,
python3-escript | python3-escript-mpi,
python3-fiat,
python3-openturns,
+ python3-persalys,
python3-silo,
sailcut,
scram,
@@ -532,10 +569,8 @@ Suggests: ann-tools,
code-aster,
code-aster-gui,
diet-agent,
- ecs,
eficas,
feel++-apps,
- freecad,
hdfview,
logcentral,
logcentral-tools,
@@ -572,11 +607,13 @@ Recommends: code-saturne-bin,
libadios-dev,
libalberta-dev,
libann-dev,
+ libbasix-dev,
libceres-dev,
libcgns-dev,
libcoin-dev,
libdeal.ii-dev,
libdime-dev,
+ libdolfinx-dev,
libdxflib-dev,
libflann-dev,
libgetfem++-dev,
@@ -588,7 +625,6 @@ Recommends: code-saturne-bin,
libmedc-dev,
libmedimport-dev,
libnetcdf-dev,
- libnfft3-dev,
libnlopt-dev,
liboce-ocaf-dev,
liboce-visualization-dev,
@@ -598,11 +634,15 @@ Recommends: code-saturne-bin,
libsilo-dev,
libsis-jhdf5-java,
libslicot-dev,
+ libtet1.5-dev,
libxdmf-dev,
+ python3-basix,
python3-collada,
+ python3-dolfinx,
+ python3-ffcx,
+ python3-fluids,
python3-netcdf4,
python3-pygalmesh,
- python3-pynfft,
python3-pyode,
r-cran-rnetcdf,
trilinos-all-dev
@@ -621,13 +661,13 @@ Suggests: ceres-solver-doc,
libjhdf5-java,
libluminate-dev,
libmetis-edf-dev,
+ libnfft3-dev,
libqwt-dev | libqwt5-qt4-dev,
libslepc3.4.2-dev,
- libtet1.4-dev,
libug-dev,
openturns-examples,
pycgns,
- python3-fluids,
+ python3-pynfft,
salome-kernel-dev
Description: Debian Science Engineering-dev packages
This metapackage will install Debian Science packages which might be
@@ -710,18 +750,16 @@ Recommends: avce00,
r-cran-sp,
sac2mseed,
viking
-Suggests: drawmap,
- earth3d,
+Suggests: earth3d,
googleearth-package,
gosmore,
- gpsdrive,
gpx2shp,
hyantesite,
hydroffice.bag-tools,
libmseed-dev,
- openjump,
pgadmin3,
python3-pyepsg,
+ python3-spaghetti,
sumo
Description: Debian Science Geography packages
This metapackage will install Debian Science packages related to
@@ -735,14 +773,17 @@ Architecture: all
Depends: ${misc:Depends},
science-config (= ${source:Version}),
science-tasks (= ${source:Version})
-Recommends: carmetal
+Recommends: carmetal,
+ python3-gengeo
Suggests: drgeo,
geogebra-kde,
libcgal-dev,
libgeometry-primitive-perl,
libgismo-dev,
libmath-geometry-voronoi-perl,
+ libopengv-dev,
octave-geometry,
+ python3-opengv,
rubiks,
salome-geom
Description: Debian Science geometry packages
@@ -757,8 +798,10 @@ Architecture: all
Depends: ${misc:Depends},
science-config (= ${source:Version}),
science-tasks (= ${source:Version})
-Recommends: feynmf,
- neuron
+Recommends: dials,
+ feynmf,
+ neuron,
+ sdpb
Suggests: cernlib,
cernlib-base,
cernlib-core,
@@ -810,7 +853,6 @@ Suggests: cernlib,
libroot-net-bonjour5.34,
libroot-net-ldap5.34,
libroot-net5.34,
- libroot-proof-clarens5.34,
libroot-proof-proofplayer5.34,
libroot-proof5.34,
libroot-roofit5.34,
@@ -851,7 +893,6 @@ Suggests: cernlib,
root-plugin-montecarlo-pythia8,
root-plugin-net-globus,
root-plugin-net-krb5,
- root-plugin-proof-peac,
root-plugin-sql-mysql,
root-plugin-sql-odbc,
root-plugin-sql-pgsql,
@@ -885,10 +926,18 @@ Recommends: libclhep-dev,
libfastjet-fortran-dev,
libfastjetplugins-dev,
libfastjettools-dev,
+ libhepmc3-dev,
+ libkim-api-dev,
+ libmctc-lib-dev,
+ libmmdb2-dev,
+ libncrystal-dev,
libsiscone-dev,
libsiscone-spherical-dev,
neuron-dev,
- python3-neuron
+ python3-dials,
+ python3-mpiplus,
+ python3-neuron,
+ python3-pymbar
Suggests: cernlib-base-dev,
cernlib-core-dev,
ckon,
@@ -946,7 +995,6 @@ Suggests: cernlib-base-dev,
libroot-net-bonjour-dev,
libroot-net-dev,
libroot-net-ldap-dev,
- libroot-proof-clarens-dev,
libroot-proof-dev,
libroot-proof-proofplayer-dev,
libroot-roofit-dev,
@@ -958,6 +1006,7 @@ Suggests: cernlib-base-dev,
pythia8-doc-html,
pythia8-doc-worksheet,
pythia8-examples,
+ refmac-dictionary,
rivet-plugins-dev,
rivet-plugins-doc,
rivet-reference,
@@ -982,6 +1031,7 @@ Depends: ${misc:Depends},
science-config (= ${source:Version}),
science-tasks (= ${source:Version})
Recommends: gwyddion,
+ libcvd-tools,
teem-apps
Suggests: gpiv,
gpivtools,
@@ -999,6 +1049,7 @@ Depends: ${misc:Depends},
science-config (= ${source:Version}),
science-tasks (= ${source:Version})
Recommends: cimg-dev,
+ libcvd-dev,
libimglib2-java,
libsimage-dev,
libvigraimpex-dev,
@@ -1022,11 +1073,13 @@ Depends: ${misc:Depends},
science-config (= ${source:Version}),
science-tasks (= ${source:Version})
Recommends: apertium,
+ apertium-eval-translator,
apertium-lex-tools,
artha,
cg3,
collatinus,
dimbl,
+ fasttext,
frog,
hfst,
hfst-ospell,
@@ -1036,9 +1089,12 @@ Recommends: apertium,
lttoolbox,
mbt,
mbtserver,
+ opennlp,
python3-pynlpl,
+ python3-thinc,
r-cran-lexrankr,
r-cran-snowballc,
+ sentencepiece,
timbl,
timblserver,
ucto,
@@ -1100,6 +1156,7 @@ Suggests: apertium-af-nl,
apertium-oc-es,
apertium-oci,
apertium-pol,
+ apertium-pol-szl,
apertium-pt-ca,
apertium-pt-gl,
apertium-rus,
@@ -1120,23 +1177,30 @@ Suggests: apertium-af-nl,
apertium-urd-hin,
frogdata,
giella-sme,
+ libapache-opennlp-java,
libcg3-dev,
+ libfasttext-dev,
libfolia-dev,
- libmbt0-dev,
+ libmbt-dev,
+ libopennlp-maxent-java,
+ libsentencepiece-dev,
+ libticcutils-dev,
libticcutils2-dev,
- libtimbl3-dev,
- libtimbl4-dev,
- libtimblserver2-dev,
- libucto1-dev,
+ libtimbl-dev,
+ libtimblserver-dev,
+ libucto-dev,
+ python3-fasttext,
+ python3-gensim,
python3-nltk,
+ python3-sentencepiece,
python3-snowballstemmer,
python3-streamparser,
- python3-thinc,
python3-timbl,
r-cran-nlp,
r-cran-tm,
sequitur-g2p,
spacy,
+ tfdocgen,
travatar,
wnsqlbuilder
Description: Debian Science Linguistics packages
@@ -1159,6 +1223,7 @@ Recommends: agda,
cvc4,
depqbf,
gringo,
+ hol-light,
hol88,
lbt,
maria,
@@ -1175,7 +1240,6 @@ Recommends: agda,
Suggests: coala,
coinor-libcoinmp-dev,
cvc3,
- hol-light,
mace2,
matita,
prover9,
@@ -1202,12 +1266,14 @@ Recommends: autoclass,
libvigraimpex-dev,
mcl,
octave-ga,
+ python3-fann2,
python3-genetic,
python3-mdp,
python3-mlpy,
python3-opencv,
python3-sklearn,
python3-statsmodels,
+ python3-torch,
python3-vigra,
r-cran-amore,
r-cran-bayesm,
@@ -1221,12 +1287,9 @@ Recommends: autoclass,
r-cran-tgp,
weka
Suggests: flann,
- libacovea-dev,
- libcomplearn-dev,
libcv-dev,
libevocosm-dev,
libmkldnn-dev,
- libqsearch-dev,
libroot-math-mlp-dev,
libroot-montecarlo-vmc-dev,
libroot-tmva-dev,
@@ -1242,6 +1305,7 @@ Suggests: flann,
lua-torch-xlua,
pgapack,
pybrain,
+ python3-torch-sparse,
root-system,
science-numericalcomputation,
science-statistics,
@@ -1270,6 +1334,7 @@ Recommends: 4ti2,
cohomcalg,
coinor-cbc,
coinor-csdp,
+ coinor-libbonmin-dev,
coinor-symphony,
coq,
cryptominisat,
@@ -1303,6 +1368,7 @@ Recommends: 4ti2,
ginac-tools,
gmsh,
graphviz,
+ hol-light,
lcalc,
libjgrapht-java,
libmatheval1,
@@ -1323,6 +1389,7 @@ Recommends: 4ti2,
octave,
palp,
pari-gp,
+ persalys,
phcpack,
planarity,
polylib-utils,
@@ -1332,6 +1399,7 @@ Recommends: 4ti2,
python3-ffc,
python3-minieigen,
python3-openturns,
+ python3-persalys,
python3-sagenb-export,
python3-ufl,
qepcad,
@@ -1342,6 +1410,7 @@ Recommends: 4ti2,
rubiks,
sagemath,
sagemath-database-conway-polynomials,
+ sagemath-database-cremona-elliptic-curves,
sagemath-database-elliptic-curves,
sagemath-database-graphs,
sagemath-database-mutually-combinatorial-designs,
@@ -1375,25 +1444,20 @@ Suggests: ann-tools,
gap-small-groups-extra,
gap-trans-groups,
gmp-ecm,
- hol-light,
isabelle,
julia,
- kseg,
libspectra-dev,
matita,
matlab-support,
model-builder,
netgen-doc,
octaviz,
- pari-extra,
primesieve,
- proofgeneral-coq,
prover9,
pyomo,
r-cran-evd,
sagetex,
scilab-ann,
- scilab-scimax,
snappea,
xmds
Description: Debian Science Mathematics packages
@@ -1423,6 +1487,7 @@ Recommends: code-saturne-bin,
libarpack++2-dev,
libarpack2-dev,
libatlas-base-dev,
+ libbasix-dev,
libblas-dev,
libblis-dev,
libblitz0-dev,
@@ -1437,12 +1502,14 @@ Recommends: code-saturne-bin,
libcvector-dev,
libdeal.ii-dev,
libdogleg-dev,
+ libdolfinx-dev,
libdouble-conversion-dev,
libdune-grid-dev,
libec-dev,
libecm-dev,
libeigen3-dev,
libfftw3-dev,
+ libflame-dev,
libflann-dev,
libflint-arb-dev,
libflint-dev,
@@ -1461,11 +1528,13 @@ Recommends: code-saturne-bin,
libhypre-dev,
libiml-dev,
libitsol-dev,
+ libjama-dev,
libjgrapht0.8-java | libjgrapht0.6-java,
liblapack-dev,
liblbfgs-dev,
liblfunction-dev,
liblinbox-dev,
+ liblip-dev,
liblrcalc-dev,
libm4ri-dev,
libm4rie-dev,
@@ -1474,15 +1543,17 @@ Recommends: code-saturne-bin,
libmathic-dev,
libmathicgb-dev,
libmatio-dev,
+ libmeschach-dev,
+ libmeshsdfilter-dev,
libmpfi-dev,
libmpfrc++-dev,
libmps-dev,
libmuparser-dev,
libnauty2-dev,
libnewmat10-dev,
- libnfft3-dev,
libnglib-dev,
libopenblas-dev,
+ libopenmesh-dev,
libopenturns-dev,
libp4est-dev,
libparsington-java,
@@ -1499,13 +1570,16 @@ Recommends: code-saturne-bin,
libsaclib-dev,
libscscp1-dev,
libscythestat-dev,
+ libsleef-dev,
libsopt-dev,
libsparskit-dev,
+ libspfft-dev,
libspooles-dev,
libstopt-dev,
libstxxl-dev,
libsuitesparse-dev,
libsuperlu-dev,
+ libsuperlu-dist-dev,
libsymmetrica2-dev,
libtachyon-dev,
libtnt-dev,
@@ -1515,24 +1589,36 @@ Recommends: code-saturne-bin,
minpack-dev,
petsc-dev,
python3-asteval,
+ python3-basix,
python3-brial,
python3-bumps,
python3-cryptominisat,
python3-cvxopt,
python3-cypari2,
+ python3-cython-blis,
+ python3-dmsh,
python3-dolfin,
+ python3-dolfinx,
python3-dtcwt,
python3-ffc,
+ python3-ffcx,
python3-gimmik,
+ python3-gpyfft,
python3-ltfatpy,
+ python3-meshplex,
+ python3-meshzoo,
+ python3-morfessor,
+ python3-mpi4py-fft,
python3-numexpr,
python3-numpy,
python3-openturns,
python3-optlang,
python3-petsc4py,
- python3-pynfft,
+ python3-pyemd,
+ python3-pyfftw,
python3-slepc4py,
python3-stopt,
+ python3-swiglpk,
python3-ufl,
sfftw-dev,
slepc-dev,
@@ -1543,6 +1629,8 @@ Suggests: cfortran,
givaro-dev-doc,
givaro-user-doc,
jsurf-alggeo,
+ libamgcl-dev,
+ libbdd-dev,
libcblas-dev,
libcliquer-dev,
libdune-functions-dev,
@@ -1556,15 +1644,16 @@ Suggests: cfortran,
libgismo-dev,
libigraph0-dev,
libitpp-dev,
- libjama-dev,
libjlapack-java,
liblevmar-dev,
- liblip-dev,
liblrs-dev,
+ libmagma-dev,
libmkl-full-dev,
libmtj-java,
libnetlib-java,
+ libnfft3-dev,
libntl-dev,
+ libortools-dev,
libparmetis-dev,
libpolybori-dev,
libpolybori-groebner-dev,
@@ -1573,16 +1662,17 @@ Suggests: cfortran,
libsollya-dev,
libsuitesparse-metis-dev,
libtestu01-0-dev,
- libtet1.4-dev,
- libtet1.4.2-dev,
- libtrilinos-dev,
+ libtet1.5-dev,
libug-dev,
openturns-examples,
- python3-gpyfft,
+ python3-amgcl,
python3-linop,
python3-msgpack-numpy,
python3-numpy-groupies,
+ python3-ortools,
+ python3-pynfft,
python3-pyviennacl,
+ python3-threadpoolctl,
sollya
Description: Debian Science Mathematics-dev packages
This metapackage will install Debian Science packages which might be
@@ -1600,25 +1690,28 @@ Recommends: cdftools,
cdo,
cmor-tables,
coda,
- cylc,
- ecaccess,
- fcm,
+ cylc-flow,
ferret-vis,
flexpart,
flextra,
+ fpzip-utils,
grads,
- gwyddion,
harp,
+ libaec-tools,
+ libatlas-ecmwf-utils,
libdap-bin,
libdap-doc,
libeccodes-tools,
+ libeckit-utils,
libemos-bin,
+ libfckit-utils,
+ libmetkit-utils,
magics++,
- makedepf90,
metview,
ncl-ncarg,
nco,
ncview,
+ odc,
python3-cdo,
python3-cfgrib,
python3-cmor,
@@ -1628,16 +1721,16 @@ Recommends: cdftools,
python3-grib,
python3-gsw,
python3-iapws,
+ python3-magics++,
python3-metaconfig,
python3-netcdf4,
python3-sphere,
- sasview,
- vistrails,
xygrib
Suggests: dballe,
geonetwork,
gerris,
gnudatalanguage,
+ mbdyn,
octave-octcdf,
paraview,
python3-openturns,
@@ -1652,8 +1745,11 @@ Architecture: all
Depends: ${misc:Depends},
science-config (= ${source:Version}),
science-tasks (= ${source:Version})
-Recommends: fftw-dev,
+Recommends: ecbuild,
+ fcm,
+ fftw-dev,
libaec-dev,
+ libatlas-ecmwf-dev,
libblas-dev,
libcdi-dev,
libcmor-dev,
@@ -1663,9 +1759,12 @@ Recommends: fftw-dev,
libdap-dev,
libeccodes-dev,
libeccodes-tools,
+ libeckit-dev,
libemos-dev,
+ libfckit-dev,
libfftw3-dev,
libfftw3-doc,
+ libfpzip-dev,
libgadap-dev,
libgctp-dev,
libhdfeos-dev,
@@ -1673,18 +1772,25 @@ Recommends: fftw-dev,
liblapack-dev,
liblapack-doc,
libmagics++-dev,
+ libmetkit-dev,
libncarg-bin,
libnetcdf-dev,
liboasis3-dev,
+ libodc-dev,
libopenturns-dev,
libproj-dev,
+ libspfft-dev,
libsphere-dev,
libterralib-dev,
libudunits2-dev,
libwreport-dev,
+ makedepf90,
netcdf-bin,
python3-coda,
+ python3-gpyfft,
python3-openturns,
+ python3-pyfftw,
+ python3-pyswarms,
python3-sasmodels,
python3-ulmo,
r-cran-rnetcdf,
@@ -1697,12 +1803,14 @@ Suggests: gfortran,
libfeel++-dev,
libgrib2c-dev,
liblas-dev,
+ libmbc-dev,
librsl-dev,
- mpi-defaults-dev,
+ mpi-defaults,
openturns-examples,
pkg-config,
python3-coards,
- python3-gpyfft,
+ python3-esda,
+ python3-threadpoolctl,
udunits-bin
Description: Debian Science Meteorology-dev packages
This metapackage will install Debian Science packages which might be
@@ -1722,14 +1830,18 @@ Recommends: abinit,
binoculars,
cadabra,
cbflib-bin,
+ cif-linguist,
cod-tools,
cp2k,
+ drawxtl,
etsf-io,
feynmf,
+ finalcif,
fityk,
garlic,
gdis,
ggobi,
+ ghemical,
gnuplot,
gpaw,
gperiodic,
@@ -1741,10 +1853,13 @@ Recommends: abinit,
liblapack3,
libssm-bin,
mayavi2,
+ mpqc,
nco,
ncview,
netcdf-bin,
+ nexus-tools,
octave,
+ openkim-models,
openmpi-bin | mpich,
psi3,
python3-lmfit,
@@ -1761,15 +1876,12 @@ Suggests: ape,
atompaw,
axiom,
bigdft,
- drawxtl,
dx,
dx-doc,
dxsamples,
exciting,
- extrema,
fdmnes,
feel++-apps,
- ghemical,
gpiv,
gpivtools,
hdf5-helpers,
@@ -1778,7 +1890,6 @@ Suggests: ape,
libgsl0ldbl,
liblevmar-2-6,
maxima,
- mpqc,
netcdf-doc,
octaviz,
octopus,
@@ -1822,30 +1933,48 @@ Recommends: abinit-doc,
libblas-dev,
libcbf-dev,
libccp4-dev,
+ libcctbx-dev,
libcexceptions-dev,
libclipper-dev,
+ libcoordgen-dev,
libetsf-io-dev,
libetsf-io-doc,
libfftw3-dev,
libgsl0-dev,
libhdf5-dev,
+ libhepmc3-dev,
+ libkim-api-dev,
liblapack-dev,
liblapack-doc,
+ libmaeparser-dev,
+ libmctc-lib-dev,
+ libmmdb2-dev,
+ libncrystal-dev,
libnetcdf-dev,
+ libnexus-dev,
+ libnexus-java,
liboce-ocaf-dev,
liboce-visualization-dev,
libopenmpi-dev | libmpich-dev,
libscalapack-mpi-dev,
libsis-jhdf5-java,
+ libspfft-dev,
libssm-dev,
libsymspg-dev,
libxc-dev,
netcdf-doc,
pyfai,
python3-binoculars,
+ python3-cctbx,
+ python3-cif2cell,
python3-fabio,
+ python3-gpyfft,
+ python3-nxs,
python3-periodictable,
python3-pycodcif,
+ python3-pyfftw,
+ python3-qutip,
+ python3-sasdata,
python3-sasmodels,
r-cran-rnetcdf,
science-mathematics-dev
@@ -1861,9 +1990,9 @@ Suggests: gsl-doc-info,
libroot-montecarlo-vmc-dev,
libroot-tmva-dev,
oce-draw,
- python3-gpyfft,
python3-h5py,
python3-netcdf4,
+ python3-threadpoolctl,
root-system,
scalapack-doc,
wannier90-1-dev
@@ -1889,7 +2018,6 @@ Recommends: amide,
mriconvert,
mricron,
nifti-bin,
- nifti2dicom,
praat,
psignifit,
python3-dipy,
@@ -1898,8 +2026,8 @@ Recommends: amide,
python3-nipype,
python3-nitime,
python3-pydicom,
+ python3-pyxnat,
python3-statsmodels,
- qnifti2dicom,
xmedcon
Suggests: afni,
bioimagesuite,
@@ -1918,10 +2046,12 @@ Suggests: afni,
lipsia,
mni-autoreg,
mni-n3,
+ nifti2dicom,
openmeeg-tools,
- openwalnut-qt4,
pysurfer,
python-mvpa2,
+ python3-bioxtasraw,
+ qnifti2dicom,
science-psychophysics,
science-typesetting,
slicer,
@@ -1993,8 +2123,11 @@ Recommends: admesh,
libppl-dev,
libqsopt-ex-dev,
librsb-dev,
+ libsleef-dev,
libsuitesparse-dev,
libsundials-dev,
+ libtoon-dev,
+ libtoontag-dev,
liggghts,
metis,
octave,
@@ -2004,11 +2137,17 @@ Recommends: admesh,
python3-csa,
python3-deap,
python3-escript | python3-escript-mpi,
+ python3-guiqwt,
python3-lmfit,
python3-matplotlib,
python3-numpy,
+ python3-ppl,
+ python3-pysph,
+ python3-pyswarms,
python3-resampy,
+ python3-rioxarray,
python3-scipy,
+ python3-sfepy,
python3-sparse,
python3-tables,
python3-theano,
@@ -2018,10 +2157,12 @@ Recommends: admesh,
r-base,
r-cran-nleqslv,
scilab,
+ sdpb,
spyder,
toulbar2,
vitables,
xtensor-dev,
+ yade,
yorick
Suggests: calculix-ccx-doc,
calculix-ccx-test,
@@ -2040,11 +2181,14 @@ Suggests: calculix-ccx-doc,
libclblas-dev,
libclsparse-dev,
libcneartree-dev,
+ libcppnumericalsolvers-dev,
+ libcubature-dev,
libgismo-dev,
+ liblbfgspp-dev,
+ libmagma-dev,
libopengm-dev,
libpsurface-dev,
libquantum-dev,
- libscirenderer-java,
libstopt-dev,
libsuitesparse-metis-dev,
matlab-support,
@@ -2058,27 +2202,23 @@ Suggests: calculix-ccx-doc,
python3-compyle,
python3-cyarray,
python3-dbfread,
- python3-guiqwt,
+ python3-lazyarray,
python3-leather,
+ python3-libpysal,
python3-numcodecs,
python3-pydap,
- python3-pysph,
- python3-sfepy,
+ python3-spyder-kernels,
python3-spyder-line-profiler,
python3-spyder-memory-profiler,
python3-spyder-reports,
python3-spyder-unittest,
python3-stopt,
+ python3-threadpoolctl,
python3-woo,
python3-zarr,
scilab-ann,
- scilab-jims,
- scilab-metanet,
- scilab-scimax,
- scilab-swt,
theano-doc,
- xtensor-python-dev,
- yade
+ xtensor-python-dev
Description: Debian Science Numerical Computation packages
This metapackage will install Debian Science packages useful for
numerical computation. The packages provide an array oriented
@@ -2092,10 +2232,11 @@ Architecture: all
Depends: ${misc:Depends},
science-config (= ${source:Version}),
science-tasks (= ${source:Version})
-Recommends: abinit | psi3,
+Recommends: abinit | mpqc | psi3,
axiom,
cadabra,
cp2k,
+ drawxtl,
etsf-io,
feynmf,
fityk,
@@ -2114,12 +2255,13 @@ Recommends: abinit | psi3,
quantum-espresso,
science-electronics,
science-numericalcomputation,
+ siconos,
+ siconos-mechanics-tools,
toulbar2,
v-sim
Suggests: blzpack,
cernlib,
clhep,
- drawxtl,
espresso++,
evolver-ogl | evolver-nox,
fdmnes,
@@ -2133,9 +2275,9 @@ Suggests: blzpack,
libroot-math-mlp-dev,
libroot-montecarlo-vmc-dev,
libroot-tmva-dev,
- mpqc | openmx,
octaviz,
openctm-tools,
+ openmx,
paw,
paw++,
paw-demos,
@@ -2159,28 +2301,47 @@ Depends: ${misc:Depends},
Recommends: fenics,
fftw-dev,
libasl-dev,
+ libbasix-dev,
libdeal.ii-dev,
+ libdolfinx-dev,
+ libfclib-dev,
libfftw3-dev,
- libnfft3-dev,
libopenctm-dev,
libp4est-dev,
libplb-dev,
+ libspfft-dev,
libxray-absorption-perl,
libxray-scattering-perl,
libxray-spacegroup-perl,
pyfai,
+ python3-basix,
+ python3-dmsh,
python3-dolfin,
+ python3-dolfinx,
+ python3-ffcx,
+ python3-gpyfft,
python3-ltfatpy,
+ python3-meshplex,
+ python3-meshzoo,
python3-multipletau,
+ python3-pyfftw,
python3-pygalmesh,
- python3-pynfft,
python3-pyode,
python3-quantities,
sfftw-dev,
trilinos-all-dev
Suggests: libfeel++-dev,
+ libnfft3-dev,
+ libopm-common-dev,
+ libopm-grid-dev,
+ libopm-material-dev,
+ libopm-models-dev,
+ libopm-simulators-dev,
+ libopm-upscaling-dev,
libtriangle-dev,
- python3-gpyfft
+ python3-opm-common,
+ python3-opm-simulators,
+ python3-pynfft
Description: Debian Science Physics-dev packages
This metapackage will install Debian Science packages which might be
helpful for development of applications for Mathematics.
@@ -2208,9 +2369,9 @@ Architecture: all
Depends: ${misc:Depends},
science-config (= ${source:Version}),
science-tasks (= ${source:Version})
-Recommends: octave-psychtoolbox-3,
- psychopy
-Suggests: science-neuroscience-cognitive,
+Recommends: octave-psychtoolbox-3
+Suggests: psychopy,
+ science-neuroscience-cognitive,
visionegg
Description: Debian Science packages for Psychophysics
This metapackage will install Debian packages which might be useful for
@@ -2231,11 +2392,19 @@ Depends: ${misc:Depends},
science-config (= ${source:Version}),
science-tasks (= ${source:Version})
Recommends: aseba,
+ catkin-lint,
+ catkin-tools,
+ collada-urdf-tools,
joint-state-publisher,
+ jskeus,
liburdfdom-tools,
+ morse-simulator,
+ mrgingham,
octomap-tools,
octovis,
orca,
+ pcl-ros-tools,
+ ros-camera-calibration,
ros-desktop,
ros-desktop-full,
ros-opencv-apps,
@@ -2244,14 +2413,14 @@ Recommends: aseba,
ros-robot-state-publisher,
ros-simulators,
rosdiagnostic
-Suggests: arduino-mk,
+Suggests: arduino-ctags,
+ arduino-mk,
choreonoid,
d-collide,
gazebo9,
gnuplot,
joint-state-publisher-gui,
libcoin-runtime,
- morse-simulator,
octave,
ompl-demos,
openhrp,
@@ -2261,7 +2430,6 @@ Suggests: arduino-mk,
orocos-rtt,
roboop,
robot-player,
- rtai,
rtnet,
solid,
vtk9,
@@ -2279,6 +2447,7 @@ Depends: ${misc:Depends},
science-config (= ${source:Version}),
science-tasks (= ${source:Version})
Recommends: ignition-tools,
+ jskeus-dev,
libapriltag-dev,
libccd-dev,
libcomedi-dev,
@@ -2301,14 +2470,21 @@ Recommends: ignition-tools,
liborocos-bfl-dev,
liborocos-kdl-dev,
libpcl-dev,
+ libpcl-ros-dev,
librobottestingframework-dev,
librosconsole-dev,
libsdformat-dev,
libsimbody-dev,
libslicot-dev,
+ liburdf-dev,
liburdfdom-dev,
liburdfdom-headers-dev,
+ libvisp-dev,
python3-comedilib,
+ python3-dmsh,
+ python3-meshplex,
+ python3-meshzoo,
+ python3-osrf-pycommon,
python3-tf2,
ros-desktop-dev,
ros-desktop-full-dev,
@@ -2316,13 +2492,17 @@ Recommends: ignition-tools,
ros-desktop-full-python-dev,
ros-environment,
ros-perception-dev,
- ros-simulators-dev
+ ros-simulators-dev,
+ vcstool
Suggests: libcnoid-dev,
libcv-dev,
+ libelas-dev,
libgazebo-dev,
+ libignition-common3-core-dev,
+ libmrgingham-dev,
libroboptim-core-dev,
- libvisp-dev,
python3-catkin-lint,
+ python3-mrgingham,
visp-images-data
Description: Debian Robotics development packages
This metapackage is part of the Debian Pure Blend "Debian Science"
@@ -2342,15 +2522,28 @@ Recommends: calculix-ccx,
lammps,
libceres-dev,
libdart-dev,
+ libopm-common-bin,
+ libopm-grid-bin,
+ libopm-simulators-bin,
+ libopm-upscaling-bin,
liggghts,
+ mbpoll,
music-bin,
neuron,
occt-draw,
occt-misc,
openfoam,
+ pysph-viewer,
python3-deap,
python3-escript | python3-escript-mpi,
- sumo
+ python3-pysph,
+ python3-qutip,
+ python3-sfepy,
+ siconos,
+ siconos-mechanics-tools,
+ sumo,
+ tkgate,
+ yade
Suggests: calculix-ccx-doc,
calculix-ccx-test,
calculix-cgx-examples,
@@ -2360,12 +2553,16 @@ Suggests: calculix-ccx-doc,
libgismo-dev,
libkim-api-v2-models,
libopensurgsim-dev,
- pysph-viewer,
- python3-pysph,
- python3-sfepy,
- python3-woo,
- radiance,
- yade
+ libopm-common-dev,
+ libopm-grid-dev,
+ libopm-material-dev,
+ libopm-models-dev,
+ libopm-simulators-dev,
+ libopm-upscaling-dev,
+ python3-opm-common,
+ python3-opm-simulators,
+ python3-pyswarms,
+ python3-woo
Description: Debian Science Simulation packages
This metapackage will install Debian Science packages that are
used to do simulations in different fields of science.
@@ -2381,11 +2578,13 @@ Recommends: apophenia-bin,
elpa-ess,
libdistlib-java,
littler,
+ persalys,
psignifit,
pspp,
python3-bayespy,
python3-openturns,
python3-pandas,
+ python3-persalys,
python3-scipy,
python3-statsmodels,
r-cran-abind,
@@ -2513,8 +2712,11 @@ Recommends: apophenia-bin,
r-recommended,
rkward
Suggests: libapophenia2-dev,
+ libicb-utils-java,
libtamuanova-dev,
node-shiny-server-client,
+ python3-leidenalg,
+ python3-pynndescent,
r-cran-bbmle,
r-cran-blockmodeling,
r-cran-brglm,
@@ -2563,7 +2765,8 @@ Architecture: all
Depends: ${misc:Depends},
science-config (= ${source:Version}),
science-tasks (= ${source:Version})
-Recommends: biber,
+Recommends: auctex,
+ biber,
bibutils,
cb2bib,
dia,
@@ -2576,31 +2779,36 @@ Recommends: biber,
jabref,
jeuclid-mathviewer,
kbibtex,
+ kile,
latexdiff,
libjlatexmath-java,
+ lyx,
mlpost,
pandoc,
- pandoc-citeproc,
pybtex,
python3-pybtex-docutils,
python3-sphinxcontrib.bibtex,
r-cran-knitr,
sagetex,
+ setzer,
sketch,
texlive,
texlive-bibtex-extra,
texlive-publishers,
texlive-science,
- texmaker | kile | lyx | auctex | vim-latexsuite | texstudio,
+ texmaker,
+ texstudio,
transfig,
+ vim-latexsuite,
xfig
Suggests: bibus,
csv2latex,
gpapers,
libgtkmathview-bin,
libqtexengine-dev,
+ libreoffice-dmaths,
luasseq,
- openoffice.org-dmaths,
+ pandoc-citeproc,
pybliographer,
pymarc,
quaneko,
@@ -2628,16 +2836,21 @@ Depends: ${misc:Depends},
science-config (= ${source:Version}),
science-tasks (= ${source:Version})
Recommends: 3depict,
+ camv-rnd,
+ ctioga2,
feedgnuplot,
fityk,
+ g3data,
geg,
gfsview,
giza-dev,
+ gle-graphics,
gmsh,
gnudatalanguage,
gnuplot,
grace,
graphviz,
+ gri,
gwyddion,
imview,
kst,
@@ -2647,9 +2860,12 @@ Recommends: 3depict,
mathgl,
matlab2tikz,
mayavi2,
+ open3d-gui,
+ open3d-tools,
paraview,
pdl,
python3-gnuplot,
+ python3-guiqwt,
python3-pyqtgraph,
python3-seaborn,
pyxplot,
@@ -2657,16 +2873,13 @@ Recommends: 3depict,
solvespace,
trend,
udav,
+ veusz,
vistrails,
yorick
Suggests: cassandra,
circos,
circos-tools,
- ctioga2,
findimagedupes,
- g3data,
- gle-graphics,
- gri,
ifrit,
jeuclid-mathviewer,
libcoin-dev,
@@ -2685,7 +2898,6 @@ Suggests: cassandra,
pgfplots,
pgplot5,
plotdrop,
- python3-guiqwt,
python3-matplotlib,
python3-pivy,
python3-vtk9,
@@ -2703,10 +2915,8 @@ Suggests: cassandra,
rlplot,
scidavis,
texlive-pictures,
- veusz,
visit,
- vtk9-examples,
- worldwind
+ vtk9-examples
Description: Debian Science data visualisation packages
This metapackage will install Debian Science packages related to data
visualization. You might also be interested in the use::viewing
@@ -2730,6 +2940,7 @@ Recommends: gnudatalanguage,
libgnuplot-iostream-dev,
libgtkdatabox-dev,
libgts-dev,
+ libopen3d-dev,
liborigin2-dev,
libplplot-dev,
libqglviewer-dev-qt5,
@@ -2744,6 +2955,7 @@ Recommends: gnudatalanguage,
python3-gnuplotlib,
python3-matplotlib,
python3-matplotlib-venn,
+ python3-open3d,
python3-pivy,
python3-plplot-qt,
python3-qwt,
@@ -2758,7 +2970,9 @@ Suggests: libcollada-dom2.4-dp-dev,
libgrits-dev,
libgtkdataboxmm-dev,
libqglviewer-dev,
- libqtexengine-dev
+ libqtexengine-dev,
+ python3-opentsne,
+ python3-symfit
Description: Debian Science development of visualisation applications
This metapackage will install Debian Science packages related to the
development of applications to visualise scientific data.
@@ -2769,7 +2983,8 @@ Architecture: all
Depends: ${misc:Depends},
science-config (= ${source:Version}),
science-tasks (= ${source:Version})
-Recommends: coop-computing-tools,
+Recommends: capsule-nextflow,
+ coop-computing-tools,
cwltool,
gearman,
gearman-tools,
=====================================
debian/control.stub
=====================================
@@ -6,7 +6,7 @@ Uploaders: Andreas Tille <tille at debian.org>,
Ole Streicher <olebole at debian.org>
Build-Depends-Indep: blends-dev (>= 0.7.5~)
Build-Depends: debhelper-compat (= 13)
-Standards-Version: 4.6.1
+Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/blends-team/science
Vcs-Git: https://salsa.debian.org/blends-team/science.git
Homepage: https://wiki.debian.org/DebianScience/
=====================================
dependency_data/debian-science_1.14.4.json
=====================================
@@ -0,0 +1 @@
+{"geography": {"depends": [], "suggests": ["googleearth-package", "sumo", "libmseed-dev", "python3-pyepsg"], "recommends": ["gis-workstation", "grass", "qgis", "qgis-plugin-grass", "proj-bin", "mapserver-bin", "gmt", "gpsbabel", "gpx2shp", "gpsd", "gpsman", "earth3d", "openscenegraph", "gpstrans", "geoip-bin", "gpsd-clients", "grass-doc", "python3-mapscript", "phppgadmin", "gpsmanshp", "viking", "avce00", "e00compr", "gdal-bin", "ogdi-bin", "postgis", "osm2pgsql", "josm", "gosmore", "python3-mapnik", "mapnik-utils", "osmpbf-bin", "hyantesite", "r-cran-sp", "r-cran-maptools", "r-cran-mapdata", "r-cran-mapproj", "r-cran-maps", "r-cran-fields", "r-cran-raster", "pgadmin3", "grace", "hydroffice.bag-tools", "python3-cartopy", "sac2mseed", "python3-spaghetti"], "ignore": [], "avoid": []}, "dataacquisition": {"depends": [], "suggests": ["gnudatalanguage", "xenomai-runtime", "linux-image-2.6-rt", "rt-tests", "gpsd", "binoculars", "python3-streamz", "tango-db", "tango-starter", "tango-accesscontrol", "python3-pytango", "python3-taurus", "hart"], "recommends": ["engauge-digitizer", "qtdmm", "g3data", "netcdf-bin", "python3-sardana", "libgetdata-tools", "jaaa", "ghkl", "xyscan", "filo", "segyio-bin", "clickhouse-tools", "csvkit", "lxi-tools", "xlsx2csv", "open3d-tools", "open3d-gui", "python3-pyvisa", "mx-dataacquisition", "epics", "plot-digitizer", "libfreenect-dev", "opendap"], "ignore": [], "avoid": []}, "workflow": {"depends": [], "suggests": ["cwlformat", "libbenchmark-tools"], "recommends": ["make", "pegasus-wms", "snakemake", "cwltool", "coop-computing-tools", "python3-nipype", "gearman", "gearman-tools", "toil", "python3-wdlparse", "capsule-nextflow"], "ignore": [], "avoid": []}, "logic": {"depends": [], "suggests": ["coinor-libcoinmp-dev"], "recommends": ["agda", "coq", "hol-light", "hol88", "matita", "proofgeneral", "why", "why3", "depqbf", "picosat", "sat4j", "alt-ergo", "boolector", "cvc3", "cvc4", "z3", "prover9", "mace2", "maude", "spass", "coinor-cbc", "coinor-symphony", "minisat+", "clasp", "coala", "gringo", "lbt", "maria", "mona", "toulbar2"], "ignore": [], "avoid": []}, "meteorology": {"depends": [], "suggests": ["paraview", "geonetwork", "gnudatalanguage", "r-base", "octave-octcdf", "gerris", "python3-openturns"], "recommends": ["libatlas-ecmwf-utils", "libeckit-utils", "libfckit-utils", "fpzip-utils", "libaec-tools", "libmetkit-utils", "libemos-bin", "odc", "cdo", "nco", "dballe", "xygrib", "metview", "ncview", "grads", "ferret-vis", "cdftools", "flextra", "flexpart", "magics++", "cylc-flow", "libeccodes-tools", "ncl-ncarg", "harp", "python3-cfgrib", "python3-cdo", "python3-cfgrib", "python3-netcdf4", "python3-grib", "python3-eccodes", "python3-drslib", "python3-metaconfig", "python3-gsw", "python3-iapws", "python3-magics++", "python3-gsw", "python3-iapws", "python3-cmor", "python3-ferret", "python3-sphere", "cmor-tables", "libdap-bin", "libdap-doc", "coda", "mbdyn"], "ignore": [], "avoid": []}, "typesetting": {"depends": [], "suggests": ["tellico", "libreoffice-dmaths", "r-cran-xtable", "r-cran-gridbase", "r-cran-highr", "r-cran-scatterd3", "r-cran-shape", "csv2latex", "libgtkmathview-bin", "svgtoipe", "xul-ext-zotero", "pymarc", "luasseq", "libqtexengine-dev"], "recommends": ["referencer", "kbibtex", "impose+", "pybliographer", "texlive-bibtex-extra", "jabref", "bibutils", "biber", "feynmf", "texlive", "texlive-science", "texlive-publishers", "texlive-math-extra", "diploma", "xfig", "transfig", "dia", "texmaker", "kile", "lyx", "texmacs", "auctex", "vim-latexsuite", "texstudio", "setzer", "pandoc", "pandoc-citeproc", "r-cran-knitr", "bibus", "mlpost", "latexdiff", "libjlatexmath-java", "cb2bib", "jeuclid-mathviewer", "sketch", "ipe", "ipe5toxml", "quaneko", "gpapers", "zotero-standalone", "gummi", "sagetex", "pybtex", "python3-sphinxcontrib.bibtex", "python3-pybtex-docutils"], "ignore": [], "avoid": []}, "robotics": {"depends": [], "suggests": ["arduino-mk", "arduino-ctags", "joint-state-publisher-gui", "ompl-demos", "libcoin-runtime", "vtk9", "octave", "gnuplot"], "recommends": ["xenomai-runtime", "morse-simulator", "choreonoid", "liburdfdom-tools", "solid", "robot-player", "d-collide", "rtnet", "orca", "roboop", "orocos-rtt", "orocos-ocl", "ros-desktop-full", "ros-desktop", "ros-perception", "ros-simulators", "ros-robot", "ros-robot-state-publisher", "rosdiagnostic", "joint-state-publisher", "catkin-lint", "catkin-tools", "collada-urdf-tools", "ros-camera-calibration", "pcl-ros-tools", "ros-opencv-apps", "openrtm", "openhrp", "gazebo9", "openrave", "octomap-tools", "octovis", "aseba", "jskeus", "mrgingham"], "ignore": [], "avoid": []}, "engineering-dev": {"depends": [], "suggests": ["libgtkdatabox-dev", "libgtkdataboxmm-dev", "libqwt-dev | libqwt5-qt4-dev", "openturns-examples", "libdiet-sed2.8-dev", "libdiet-client2.8-dev", "libdiet-dagda2.8-dev", "libdiet-admin2.8-dev", "ceres-solver-doc"], "recommends": ["libalberta-dev", "code-saturne-bin", "code-saturne-include", "libcgns-dev", "libitpp-dev", "libadios-dev", "libbox-dev", "libsilo-dev", "libxdmf-dev", "libgetfem++-dev", "libhdf5-serial-dev", "libjhdf5-java", "libjhdf4-java", "libsis-jhdf5-java", "pycgns", "liboce-visualization-dev", "liboce-ocaf-dev", "libdeal.ii-dev", "libfeel++-dev", "libluminate-dev", "libopenturns-dev", "libmadlib-dev", "libtet1.5-dev", "libslepc3.4.2-dev", "libelmer-dev", "libug-dev", "libmed-dev", "libmedc-dev", "libmedimport-dev", "libnetcdf-dev", "python3-netcdf4", "r-cran-rnetcdf", "libnfft3-dev", "libnlopt-dev", "libcoin-dev", "libmetis-edf-dev", "libslicot-dev", "python3-collada", "libann-dev", "libflann-dev", "libdime-dev", "libdxflib-dev", "salome-kernel-dev", "python3-pynfft", "libplb-dev", "libceres-dev", "trilinos-all-dev", "libp4est-dev", "libgismo-dev", "python3-pygalmesh", "python3-fluids", "liblxi-dev", "python3-pyode", "libbasix-dev", "python3-basix", "libdolfinx-dev", "python3-dolfinx", "python3-ffcx"], "ignore": [], "avoid": []}, "highenergy-physics": {"depends": [], "suggests": ["paw-demos", "geant321-doc", "lhapdf-pdfsets-minimal", "root-system-doc"], "recommends": ["cernlib", "cernlib-base", "cernlib-core", "cernlib-extras", "dzedit", "kuipc", "kxterm", "nypatchy", "pawserv", "zftp", "paw", "paw++", "cernlib-montecarlo", "geant321", "feynmf", "looptools", "octave-lhapdf", "root-macro-fastjet", "pythia8-root-interface", "libroot-bindings-python5.34", "libroot-bindings-ruby5.34", "libroot-graf3d-gl5.34", "libroot-io-xmlparser5.34", "libroot-math-mathmore5.34", "libroot-math-unuran5.34", "libroot-misc-memstat5.34", "libroot-misc-table5.34", "libroot-net-bonjour5.34", "libroot-net-ldap5.34", "libroot-roofit5.34", "libroot-geom5.34", "libroot-graf2d-gpad5.34", "libroot-graf2d-graf5.34", "libroot-graf2d-postscript5.34", "libroot-graf3d-eve5.34", "libroot-graf3d-g3d5.34", "libroot-gui5.34", "libroot-gui-ged5.34", "libroot-hist5.34", "libroot-hist-spectrum5.34", "libroot-html5.34", "libroot-io5.34", "libroot-math-foam5.34", "libroot-math-genvector5.34", "libroot-math-mathcore5.34", "libroot-math-matrix5.34", "libroot-math-minuit5.34", "libroot-math-mlp5.34", "libroot-math-physics5.34", "libroot-math-quadp5.34", "libroot-math-smatrix5.34", "libroot-math-splot5.34", "libroot-misc-minicern5.34", "libroot-montecarlo-eg5.34", "libroot-montecarlo-vmc5.34", "libroot-net5.34", "libroot-net-auth5.34", "libroot-proof5.34", "libroot-proof-proofplayer5.34", "libroot-tmva5.34", "libroot-tree5.34", "libroot-tree-treeplayer5.34", "libroot-core5.34", "root-plugin-graf2d-asimage", "root-plugin-geom-gdml", "root-plugin-gui-qt", "root-plugin-graf2d-qt", "root-plugin-math-fftw3", "root-plugin-math-minuit2", "root-plugin-montecarlo-pythia8", "root-plugin-net-globus", "root-plugin-net-krb5", "root-plugin-sql-mysql", "root-plugin-sql-odbc", "root-plugin-sql-pgsql", "root-plugin-geom-geombuilder", "root-plugin-geom-geompainter", "root-plugin-graf2d-x11", "root-plugin-graf3d-x3d", "root-plugin-gui-fitpanel", "root-plugin-gui-guibuilder", "root-plugin-gui-sessionviewer", "root-plugin-hist-hbook", "root-plugin-hist-histpainter", "root-plugin-hist-spectrumpainter", "root-plugin-io-sql", "root-plugin-io-xml", "root-plugin-math-fumili", "root-plugin-tree-treeviewer", "root-system-proofd", "root-system-rootd", "root-system-bin", "root-system-common", "root-system", "rivet", "rivet-plugins", "rivet-root-converter", "thepeg", "thepeg-gui", "herwig++", "geant4", "neuron", "dials", "sdpb"], "ignore": [], "avoid": []}, "viewing-dev": {"depends": [], "suggests": ["libcollada-dom2.4-dp-dev", "python3-opentsne"], "recommends": ["pdl", "gnudatalanguage", "libgrits-dev", "python3-matplotlib", "libgnuplot-iostream-dev", "libqglviewer-dev", "python3-gnuplot", "python3-gnuplotlib", "libcoin-dev", "libsoqt520-dev", "libvtk9-dev", "libvtk9-qt-dev", "python3-vtk9", "libvtk9-java", "vtk9-examples", "python3-pivy", "libgtkdataboxmm-dev", "libgtkdatabox-dev", "inventor-dev", "libqtexengine-dev", "libqwtplot3d-qt5-dev", "python3-qwt3d-qt5", "python3-qwt", "libchealpix-dev", "python3-skimage", "python3-skimage-lib", "python3-matplotlib-venn", "libplplot-dev", "python3-plplot-qt", "libglm-dev", "libglbinding-dev", "libforge-dev", "libgli-dev", "libglobjects-dev", "libslvs1-dev", "libgts-dev", "python3-vispy", "libgl2ps-dev", "libqglviewer-dev-qt5", "python3-qwt", "liborigin2-dev", "libopen3d-dev", "python3-open3d", "python3-symfit"], "ignore": [], "avoid": []}, "geometry": {"depends": [], "suggests": ["libcgal-dev", "libgeometry-primitive-perl", "libmath-geometry-voronoi-perl", "octave-geometry", "rubiks", "libgismo-dev", "libopengv-dev", "python3-opengv"], "recommends": ["carmetal", "salome-geom", "drgeo", "geogebra-kde", "python3-gengeo"], "ignore": [], "avoid": []}, "economics": {"depends": [], "suggests": ["elpa-ess", "dynare-matlab", "x13as", "science-mathematics", "science-numericalcomputation", "science-statistics", "science-social", "science-financial"], "recommends": ["dynare", "gretl", "octave-econometrics", "r-base", "r-cran-urca", "r-cran-bayesm", "r-cran-foreign", "r-cran-hmisc", "r-cran-tseries", "r-cran-mfilter", "r-cran-lme4", "r-cran-mcmcpack", "r-cran-fimport", "r-cran-fnonlinear", "r-cran-funitroots", "r-cran-gmm", "r-cran-wdi", "r-cran-pwt", "r-cran-pwt8", "r-cran-pwt9", "r-cran-rsdmx", "r-cran-isocodes", "r-cran-dynlm", "r-cran-aer", "r-cran-plm", "r-cran-rdbnomics", "python3-statsmodels", "dolo", "recs", "python3-quantecon", "r-cran-ecdat", "r-other-bmr", "minsky", "r-cran-vars", "r-other-gecon", "netlogo", "r-cran-pdfetch", "pksfc", "repast-symphony", "repast-hpc", "python3-pandasdmx"], "ignore": [], "avoid": []}, "physics-dev": {"depends": [], "suggests": ["libtriangle-dev", "libopm-common-dev", "python3-opm-common", "libopm-grid-dev", "libopm-material-dev", "libopm-models-dev", "libopm-simulators-dev", "python3-opm-simulators", "libopm-upscaling-dev"], "recommends": ["pyfai", "libnfft3-dev", "libfftw3-dev", "fftw-dev", "sfftw-dev", "python3-pyfftw", "python3-gpyfft", "libspfft-dev", "libopenctm-dev", "python3-quantities", "python3-multipletau", "python3-pynfft", "libfeel++-dev", "libplb-dev", "libasl-dev", "trilinos-all-dev", "libdeal.ii-dev", "libp4est-dev", "fenics", "python3-dolfin", "libbasix-dev", "python3-basix", "libdolfinx-dev", "python3-dolfinx", "python3-ffcx", "python3-ltfatpy", "python3-pygalmesh", "python3-dmsh", "python3-meshplex", "python3-meshzoo", "libxray-absorption-perl", "libxray-scattering-perl", "libxray-spacegroup-perl", "python3-pyode", "libfclib-dev"], "ignore": [], "avoid": []}, "viewing": {"depends": [], "suggests": ["libgrits-dev", "med-imaging", "libgtkmathview-bin", "jeuclid-mathviewer", "texlive-pictures", "pgplot5", "r-cran-plotrix", "r-cran-colorspace", "r-cran-labeling", "r-cran-scales", "r-cran-ggplot2", "r-cran-scatterplot3d", "r-cran-vioplot", "r-cran-shape", "r-cran-qqman", "r-cran-aplpack", "r-cran-aplpack", "findimagedupes", 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"apertium-ukr", "apertium-urd", "apertium-urd-hin", "python3-streamparser", "libcg3-dev", "r-cran-nlp", "r-cran-tm", "python3-snowballstemmer", "libapache-opennlp-java", "libfasttext-dev", "python3-fasttext", "python3-gensim", "libopennlp-maxent-java", "libsentencepiece-dev", "python3-sentencepiece"], "recommends": ["wordnet", "apertium", "apertium-lex-tools", "link-grammar", "apertium-eval-translator", "artha", "sequitur-g2p", "timbl", "timblserver", "mbt", "mbtserver", "ucto", "dimbl", "frog", "collatinus", "python3-timbl", "travatar", "cg3", "libcld2-dev", "python3-pynlpl", "uctodata", "giella-sme", "hfst", "hfst-ospell", "lttoolbox", "r-cran-snowballc", "r-cran-lexrankr", "spacy", "python3-thinc", "irstlm", "opennlp", "fasttext", "sentencepiece"], "ignore": [], "avoid": []}}
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View it on GitLab: https://salsa.debian.org/blends-team/science/-/compare/d05a6660af38274de648f9a594e7e09e9b4ba03b...03fae6b526ac3f1f757a66bf69d570318364f5e8
--
View it on GitLab: https://salsa.debian.org/blends-team/science/-/compare/d05a6660af38274de648f9a594e7e09e9b4ba03b...03fae6b526ac3f1f757a66bf69d570318364f5e8
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