[Blends-commit] [Git][blends-team/med][master] 2 commits: Remove gbrowse which is removed from Debian

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Blends Team / med


Commits:
fd3f59a7 by Andreas Tille at 2025-11-22T21:26:50+01:00
Remove gbrowse which is removed from Debian

- - - - -
61054d00 by Andreas Tille at 2025-12-18T16:45:07+01:00
Remove r-cran-medadherence which is removed from Debian

- - - - -


3 changed files:

- debian/changelog
- tasks/bio
- tasks/practice


Changes:

=====================================
debian/changelog
=====================================
@@ -6,6 +6,8 @@ debian-med (3.9.1) UNRELEASED; urgency=medium
   * Remove python3-alignlib since replaced by python3-tinyalign
   * Move blends-dev from Build-Depends-Indep to Build-Depends
   * Standards-Version: 4.7.2
+  * Remove gbrowse which is removed from Debian
+  * Remove r-cran-medadherence which is removed from Debian
 
   [ Charles Plessy ]
   * Remove r-cran-spp, r-cran-tcr and r-cran-sdmtools (removed from CRAN)


=====================================
tasks/bio
=====================================
@@ -243,9 +243,6 @@ X-Begin-Category: Genome Browser
 
 Recommends: artemis
 
-Recommends: gbrowse
-X-Importance: Academic ones are really expensive for commercial use
-
 X-End-Category: Genome Browser
 
 Recommends: python3-biomaj3-daemon
@@ -2878,19 +2875,6 @@ Pkg-Description: view comparisons of genetic and physical maps
  CMap is a web-based tool that allows users to view comparisons of genetic and
  physical maps. The package also includes tools for curating map data.
 
-Recommends: gbrowse-syn
-Homepage: http://gmod.org/wiki/GBrowse_syn
-License: Not specified
-Pkg-Description: Generic Synteny Browser
- GBrowse_syn, or the Generic Synteny Browser, is a GBrowse-based synteny
- browser designed to display multiple genomes, with a central reference
- species compared to two or more additional species.  It can be used to
- view multiple sequence alignment data, synteny or co-linearity data
- from other sources against genome annotations provided by GBrowse.
- GBrowse_syn is included with the standard GBrowse package (version 1.69 and
- later). Working examples can be seen at TAIR and WormBase.
-
-
 Recommends: tripal
 Homepage: http://tripal.info/
 License: GPL ( as Drupal a derivative )


=====================================
tasks/practice
=====================================
@@ -16,8 +16,6 @@ Suggests: libctapimkt1
 
 Recommends: freediams, freemedforms-emr
 
-Recommends: r-cran-medadherence
-
 Recommends: entangle
 
 Recommends: oscar



View it on GitLab: https://salsa.debian.org/blends-team/med/-/compare/b42546c1fa73d3fb10fa9b685b3625328eb3eaeb...61054d00fa0c5c43adf6729e5cc1218ab51dfa5c

-- 
View it on GitLab: https://salsa.debian.org/blends-team/med/-/compare/b42546c1fa73d3fb10fa9b685b3625328eb3eaeb...61054d00fa0c5c43adf6729e5cc1218ab51dfa5c
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