[Blends-commit] [Git][blends-team/med][master] bcbio is dead

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Blends Team / med


Commits:
a97db5c3 by Andreas Tille at 2026-03-08T14:47:31+01:00
bcbio is dead

- - - - -


4 changed files:

- tasks/bio
- tasks/bio-dev
- tasks/bio-ngs
- tasks/covid-19


Changes:

=====================================
tasks/bio
=====================================
@@ -532,8 +532,6 @@ Recommends: barrnap
 
 Recommends: bax2bam
 
-Recommends: bcbio
-
 Recommends: bcftools
 
 Recommends: bigsdb


=====================================
tasks/bio-dev
=====================================
@@ -434,8 +434,6 @@ Recommends: python3-cobra
 
 Recommends: python3-pybigwig
 
-Recommends: python3-bcbio-gff
-
 Recommends: libtabixpp-dev
 
 Suggests: python3-networkx
@@ -565,8 +563,6 @@ Recommends: python3-airr, python3-presto
 
 Suggests: libmilib-java, vdjtools
 
-Recommends: python3-bcbio
-
 Suggests: python3-ctdopts, ctdconverter
 
 Recommends: libpll-dev


=====================================
tasks/bio-ngs
=====================================
@@ -78,8 +78,6 @@ Recommends: last-align, maq, ssake, velvet | velvet-long
 
 Recommends: bamtools
 
-Recommends: bcbio
-
 Recommends: bcftools
 WNPP: 804007
 


=====================================
tasks/covid-19
=====================================
@@ -417,8 +417,6 @@ Recommends: bbmap
 
 Recommends: bcalm
 
-Recommends: bcbio
-
 Recommends: biobambam2
 
 Recommends: clonalframeml



View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/a97db5c3d233b72ef935815fbd66795d705d23f0

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