[Debian-astro-maintainers] Bug#1026720: spectral-cube: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.11 3.10" returned exit code 13
Lucas Nussbaum
lucas at debian.org
Tue Dec 20 17:29:56 GMT 2022
Source: spectral-cube
Version: 0.6.0-1
Severity: serious
Justification: FTBFS
Tags: bookworm sid ftbfs
User: lucas at debian.org
Usertags: ftbfs-20221220 ftbfs-bookworm
Hi,
During a rebuild of all packages in sid, your package failed to build
on amd64.
Relevant part (hopefully):
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> dh_auto_test
> I: pybuild base:240: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_spectral-cube/build; python3.11 -m pytest
> ============================= test session starts ==============================
> platform linux -- Python 3.11.1, pytest-7.2.0, pluggy-1.0.0+repack
> rootdir: /<<PKGBUILDDIR>>, configfile: setup.cfg
> plugins: astropy-header-0.2.2, doctestplus-0.12.1, mock-3.8.2, filter-subpackage-0.1.1, cov-4.0.0, arraydiff-0.5.0, hypothesis-6.60.0, astropy-0.10.0, openfiles-0.5.0, remotedata-0.3.3
> collected 1653 items
>
> spectral_cube/spectral_axis.py . [ 0%]
> spectral_cube/tests/test_analysis_functions.py ................. [ 1%]
> spectral_cube/tests/test_casafuncs.py ......ssssssssssssss [ 2%]
> spectral_cube/tests/test_cube_utils.py ....... [ 2%]
> spectral_cube/tests/test_dask.py .s..s.. [ 3%]
> spectral_cube/tests/test_io.py .................... [ 4%]
> spectral_cube/tests/test_masks.py ...................................... [ 6%]
> ...............................................XX.... [ 9%]
> spectral_cube/tests/test_moments.py .................................... [ 12%]
> ........................................................................ [ 16%]
> ........................................................................ [ 20%]
> ........ [ 21%]
> spectral_cube/tests/test_performance.py ...s.. [ 21%]
> spectral_cube/tests/test_projection.py .......................x......... [ 23%]
> .....xxx.......x........................................................ [ 27%]
> ...................... [ 29%]
> spectral_cube/tests/test_regrid.py ......ssssFF..s...............sss.... [ 31%]
> s [ 31%]
> spectral_cube/tests/test_spectral_axis.py .............................. [ 33%]
> ...................... [ 34%]
> spectral_cube/tests/test_spectral_cube.py .............................. [ 36%]
> ........................................................................ [ 40%]
> ........................................................................ [ 45%]
> ........................................................................ [ 49%]
> ............s.....s...........sssss..................................... [ 53%]
> ............ssssss......................ss.............................. [ 58%]
> ........................................................................ [ 62%]
> ....................ssssss......ssssssssssss......ssssssssssss......ssss [ 67%]
> ssssssss......ssssssssssss......ssssss.................................. [ 71%]
> ........................................................ssssss......ssss [ 75%]
> ssssssss......ssssssssssss......ssssssssssss......ssssssssssss......ssss [ 80%]
> ss.................................s.s..............xxxx................ [ 84%]
> ..................................................ssss.................. [ 88%]
> ..........xxxxxxxx......sss...................... [ 91%]
> spectral_cube/tests/test_stokes_spectral_cube.py ....................... [ 93%]
> ................................................................... [ 97%]
> spectral_cube/tests/test_subcubes.py ..ssssssssssssssssssss [ 98%]
> spectral_cube/tests/test_visualization.py ....ssssssss [ 99%]
> spectral_cube/tests/test_wcs_utils.py ............ [100%]
>
> =================================== FAILURES ===================================
> _________________________ test_spectral_smooth[False] __________________________
>
> data_522_delta = PosixPath('/tmp/pytest-of-user42/pytest-1/test_spectral_smooth_False_0/522_delta.fits')
> use_dask = False
>
> def test_spectral_smooth(data_522_delta, use_dask):
>
> cube, data = cube_and_raw(data_522_delta, use_dask=use_dask)
>
> result = cube.spectral_smooth(kernel=convolution.Gaussian1DKernel(1.0), use_memmap=False)
>
> > np.testing.assert_almost_equal(result[:,0,0].value,
> convolution.Gaussian1DKernel(1.0,
> x_size=5).array,
> 4)
> E AssertionError:
> E Arrays are not almost equal to 4 decimals
> E
> E Mismatched elements: 5 / 5 (100%)
> E Max absolute difference: 0.00367648
> E Max relative difference: 0.00913138
> E x: array([0.054 , 0.242 , 0.3989, 0.242 , 0.054 ])
> E y: array([0.0545, 0.2442, 0.4026, 0.2442, 0.0545])
>
> spectral_cube/tests/test_regrid.py:131: AssertionError
> __________________________ test_spectral_smooth[True] __________________________
>
> data_522_delta = PosixPath('/tmp/pytest-of-user42/pytest-1/test_spectral_smooth_True_0/522_delta.fits')
> use_dask = True
>
> def test_spectral_smooth(data_522_delta, use_dask):
>
> cube, data = cube_and_raw(data_522_delta, use_dask=use_dask)
>
> result = cube.spectral_smooth(kernel=convolution.Gaussian1DKernel(1.0), use_memmap=False)
>
> > np.testing.assert_almost_equal(result[:,0,0].value,
> convolution.Gaussian1DKernel(1.0,
> x_size=5).array,
> 4)
> E AssertionError:
> E Arrays are not almost equal to 4 decimals
> E
> E Mismatched elements: 5 / 5 (100%)
> E Max absolute difference: 0.00367648
> E Max relative difference: 0.00913138
> E x: array([0.054 , 0.242 , 0.3989, 0.242 , 0.054 ])
> E y: array([0.0545, 0.2442, 0.4026, 0.2442, 0.0545])
>
> spectral_cube/tests/test_regrid.py:131: AssertionError
> =========================== short test summary info ============================
> FAILED spectral_cube/tests/test_regrid.py::test_spectral_smooth[False] - Asse...
> FAILED spectral_cube/tests/test_regrid.py::test_spectral_smooth[True] - Asser...
> = 2 failed, 1434 passed, 198 skipped, 17 xfailed, 2 xpassed in 534.41s (0:08:54) =
> E: pybuild pybuild:386: test: plugin distutils failed with: exit code=1: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_spectral-cube/build; python3.11 -m pytest
> I: pybuild base:240: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_spectral-cube/build; python3.10 -m pytest
> ============================= test session starts ==============================
> platform linux -- Python 3.10.9, pytest-7.2.0, pluggy-1.0.0+repack
> rootdir: /<<PKGBUILDDIR>>, configfile: setup.cfg
> plugins: astropy-header-0.2.2, doctestplus-0.12.1, mock-3.8.2, filter-subpackage-0.1.1, cov-4.0.0, arraydiff-0.5.0, hypothesis-6.60.0, astropy-0.10.0, openfiles-0.5.0, remotedata-0.3.3
> collected 1653 items
>
> spectral_cube/spectral_axis.py . [ 0%]
> spectral_cube/tests/test_analysis_functions.py ................. [ 1%]
> spectral_cube/tests/test_casafuncs.py ......ssssssssssssss [ 2%]
> spectral_cube/tests/test_cube_utils.py ....... [ 2%]
> spectral_cube/tests/test_dask.py .s..s.. [ 3%]
> spectral_cube/tests/test_io.py .................... [ 4%]
> spectral_cube/tests/test_masks.py ...................................... [ 6%]
> ...............................................XX.... [ 9%]
> spectral_cube/tests/test_moments.py .................................... [ 12%]
> ........................................................................ [ 16%]
> ........................................................................ [ 20%]
> ........ [ 21%]
> spectral_cube/tests/test_performance.py ...s.. [ 21%]
> spectral_cube/tests/test_projection.py .......................x......... [ 23%]
> .....xxx.......x........................................................ [ 27%]
> ...................... [ 29%]
> spectral_cube/tests/test_regrid.py ......ssssFF..s...............sss.... [ 31%]
> s [ 31%]
> spectral_cube/tests/test_spectral_axis.py .............................. [ 33%]
> ...................... [ 34%]
> spectral_cube/tests/test_spectral_cube.py .............................. [ 36%]
> ........................................................................ [ 40%]
> ........................................................................ [ 45%]
> ........................................................................ [ 49%]
> ............s.....s...........sssss..................................... [ 53%]
> ............ssssss......................ss.............................. [ 58%]
> ........................................................................ [ 62%]
> ....................ssssss......ssssssssssss......ssssssssssss......ssss [ 67%]
> ssssssss......ssssssssssss......ssssss.................................. [ 71%]
> ........................................................ssssss......ssss [ 75%]
> ssssssss......ssssssssssss......ssssssssssss......ssssssssssss......ssss [ 80%]
> ss.................................s.s..............xxxx................ [ 84%]
> ..................................................ssss.................. [ 88%]
> ..........xxxxxxxx......sss...................... [ 91%]
> spectral_cube/tests/test_stokes_spectral_cube.py ....................... [ 93%]
> ................................................................... [ 97%]
> spectral_cube/tests/test_subcubes.py ..ssssssssssssssssssss [ 98%]
> spectral_cube/tests/test_visualization.py ....ssssssss [ 99%]
> spectral_cube/tests/test_wcs_utils.py ............ [100%]
>
> =================================== FAILURES ===================================
> _________________________ test_spectral_smooth[False] __________________________
>
> data_522_delta = PosixPath('/tmp/pytest-of-user42/pytest-2/test_spectral_smooth_False_0/522_delta.fits')
> use_dask = False
>
> def test_spectral_smooth(data_522_delta, use_dask):
>
> cube, data = cube_and_raw(data_522_delta, use_dask=use_dask)
>
> result = cube.spectral_smooth(kernel=convolution.Gaussian1DKernel(1.0), use_memmap=False)
>
> > np.testing.assert_almost_equal(result[:,0,0].value,
> convolution.Gaussian1DKernel(1.0,
> x_size=5).array,
> 4)
> E AssertionError:
> E Arrays are not almost equal to 4 decimals
> E
> E Mismatched elements: 5 / 5 (100%)
> E Max absolute difference: 0.00367648
> E Max relative difference: 0.00913138
> E x: array([0.054 , 0.242 , 0.3989, 0.242 , 0.054 ])
> E y: array([0.0545, 0.2442, 0.4026, 0.2442, 0.0545])
>
> spectral_cube/tests/test_regrid.py:131: AssertionError
> __________________________ test_spectral_smooth[True] __________________________
>
> data_522_delta = PosixPath('/tmp/pytest-of-user42/pytest-2/test_spectral_smooth_True_0/522_delta.fits')
> use_dask = True
>
> def test_spectral_smooth(data_522_delta, use_dask):
>
> cube, data = cube_and_raw(data_522_delta, use_dask=use_dask)
>
> result = cube.spectral_smooth(kernel=convolution.Gaussian1DKernel(1.0), use_memmap=False)
>
> > np.testing.assert_almost_equal(result[:,0,0].value,
> convolution.Gaussian1DKernel(1.0,
> x_size=5).array,
> 4)
> E AssertionError:
> E Arrays are not almost equal to 4 decimals
> E
> E Mismatched elements: 5 / 5 (100%)
> E Max absolute difference: 0.00367648
> E Max relative difference: 0.00913138
> E x: array([0.054 , 0.242 , 0.3989, 0.242 , 0.054 ])
> E y: array([0.0545, 0.2442, 0.4026, 0.2442, 0.0545])
>
> spectral_cube/tests/test_regrid.py:131: AssertionError
> =========================== short test summary info ============================
> FAILED spectral_cube/tests/test_regrid.py::test_spectral_smooth[False] - Asse...
> FAILED spectral_cube/tests/test_regrid.py::test_spectral_smooth[True] - Asser...
> = 2 failed, 1434 passed, 198 skipped, 17 xfailed, 2 xpassed in 392.76s (0:06:32) =
> E: pybuild pybuild:386: test: plugin distutils failed with: exit code=1: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_spectral-cube/build; python3.10 -m pytest
> dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.11 3.10" returned exit code 13
The full build log is available from:
http://qa-logs.debian.net/2022/12/20/spectral-cube_0.6.0-1_unstable.log
All bugs filed during this archive rebuild are listed at:
https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20221220;users=lucas@debian.org
or:
https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20221220&fusertaguser=lucas@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
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