[Debian-astro-maintainers] Bug#1095357: munipack: FTBFS: configure: Oak Leaf library not found
Santiago Vila
sanvila at debian.org
Fri Feb 7 12:11:57 GMT 2025
Package: src:munipack
Version: 0.6.1-1
Severity: serious
Tags: ftbfs trixie sid
Dear maintainer:
During a rebuild of all packages in unstable, your package failed to build:
--------------------------------------------------------------------------------
[...]
debian/rules clean
dh clean --no-parallel
dh_autoreconf_clean -O--no-parallel
dh_clean -O--no-parallel
debian/rules binary
dh binary --no-parallel
dh_update_autotools_config -O--no-parallel
dh_autoreconf -O--no-parallel
dh_auto_configure -O--no-parallel
./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking
checking build system type... x86_64-pc-linux-gnu
checking for a BSD-compatible install... /usr/bin/install -c
checking whether sleep supports fractional seconds... yes
checking filesystem timestamp resolution... 0.01
[... snipped ...]
configure:6349: checking for GNU libc compatible malloc
configure:6381: gcc -o conftest -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now conftest.c >&5
configure:6381: $? = 0
configure:6381: ./conftest
configure:6381: $? = 0
configure:6395: result: yes
configure:6421: checking Fortran 90 module inclusion flag
configure:6444: gfortran -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -ffpe-summary=invalid,zero,overflow conftest.f >&5
configure:6444: $? = 0
configure:6459: gfortran -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -ffpe-summary=invalid,zero,overflow -Mconftest.dir -Mconftest.dir conftest.f >&5
gfortran: error: unrecognized command-line option '-Mconftest.dir'
gfortran: error: unrecognized command-line option '-Mconftest.dir'
configure:6459: $? = 1
configure: failed program was:
|
| program main
| use conftest_module
| call conftest_routine
| end program
configure:6459: gfortran -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -ffpe-summary=invalid,zero,overflow -Iconftest.dir -Iconftest.dir conftest.f >&5
configure:6459: $? = 0
configure:6482: result: -I
configure:6497: checking Fortran 90 module output flag
configure:6526: gfortran -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -ffpe-summary=invalid,zero,overflow -Jsub conftest.f >&5
configure:6526: $? = 0
configure:6536: gfortran -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -ffpe-summary=invalid,zero,overflow -Jsub conftest.f >&5
f951: Warning: Nonexistent include directory 'sub' [-Wmissing-include-dirs]
configure:6536: $? = 0
configure:6561: result: -J
configure:6577: checking Fortran 90 module extension
configure:6600: gfortran -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -ffpe-summary=invalid,zero,overflow conftest.f >&5
configure:6600: $? = 0
configure:6619: result: mod
configure:6631: checking for math.h
configure:6631: gcc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5
configure:6631: $? = 0
configure:6631: result: yes
configure:6638: checking for library containing sqrt
configure:6674: gcc -o conftest -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now conftest.c >&5
conftest.c:35:6: warning: conflicting types for built-in function 'sqrt'; expected 'double(double)' [-Wbuiltin-declaration-mismatch]
35 | char sqrt (void);
| ^~~~
conftest.c:1:1: note: 'sqrt' is declared in header '<math.h>'
1 | /* confdefs.h */
/usr/bin/ld: /tmp/ccdw3yuZ.o: in function `main':
././conftest.c:39:(.text.startup+0x9): undefined reference to `sqrt'
collect2: error: ld returned 1 exit status
configure:6674: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "Munipack"
| #define PACKAGE_TARNAME "munipack"
| #define PACKAGE_VERSION "0.6.1"
| #define PACKAGE_STRING "Munipack 0.6.1"
| #define PACKAGE_BUGREPORT "hroch at physics.muni.cz"
| #define PACKAGE_URL "https://munipack.physics.muni.cz"
| #define PACKAGE_COPYLEFT "(C) 1997-2022 F.Hroch <hroch at physics.muni.cz>"
| #define PACKAGE_DESCRIPTION "An astronomical image processing software"
| #define PACKAGE "munipack"
| #define VERSION "0.6.1"
| #define HAVE_STDIO_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_UNISTD_H 1
| #define STDC_HEADERS 1
| #define HAVE_MALLOC 1
| #define HAVE_MATH_H 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply.
| The 'extern "C"' is for builds by C++ compilers;
| although this is not generally supported in C code supporting it here
| has little cost and some practical benefit (sr 110532). */
| #ifdef __cplusplus
| extern "C"
| #endif
| char sqrt (void);
| int
| main (void)
| {
| return sqrt ();
| ;
| return 0;
| }
configure:6674: gcc -o conftest -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now conftest.c -lm >&5
conftest.c:35:6: warning: conflicting types for built-in function 'sqrt'; expected 'double(double)' [-Wbuiltin-declaration-mismatch]
35 | char sqrt (void);
| ^~~~
conftest.c:1:1: note: 'sqrt' is declared in header '<math.h>'
1 | /* confdefs.h */
configure:6674: $? = 0
configure:6696: result: -lm
configure:6707: checking for library containing gethostbyname
configure:6743: gcc -o conftest -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now conftest.c -lm >&5
configure:6743: $? = 0
configure:6765: result: none required
configure:6774: checking for library containing connect
configure:6810: gcc -o conftest -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now conftest.c -lm >&5
configure:6810: $? = 0
configure:6832: result: none required
configure:6843: checking for fitsio.h
configure:6843: gcc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5
configure:6843: $? = 0
configure:6843: result: yes
configure:6850: checking for ffclos in -lcfitsio
configure:6879: gcc -o conftest -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now conftest.c -lcfitsio -lm -lm >&5
configure:6879: $? = 0
configure:6891: result: yes
configure:6914: checking for lmder_ in -lminpack
configure:6943: gcc -o conftest -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now conftest.c -lminpack -lm >&5
configure:6943: $? = 0
configure:6955: result: yes
configure:6979: checking for __oakleaf_MOD_rmean_real64 in -loakleaf
configure:7008: gcc -o conftest -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now conftest.c -loakleaf -lm >&5
/usr/bin/ld: /tmp/ccDl6LoM.o: in function `main':
././conftest.c:40:(.text.startup+0x9): undefined reference to `__oakleaf_MOD_rmean_real64'
collect2: error: ld returned 1 exit status
configure:7008: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "Munipack"
| #define PACKAGE_TARNAME "munipack"
| #define PACKAGE_VERSION "0.6.1"
| #define PACKAGE_STRING "Munipack 0.6.1"
| #define PACKAGE_BUGREPORT "hroch at physics.muni.cz"
| #define PACKAGE_URL "https://munipack.physics.muni.cz"
| #define PACKAGE_COPYLEFT "(C) 1997-2022 F.Hroch <hroch at physics.muni.cz>"
| #define PACKAGE_DESCRIPTION "An astronomical image processing software"
| #define PACKAGE "munipack"
| #define VERSION "0.6.1"
| #define HAVE_STDIO_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_UNISTD_H 1
| #define STDC_HEADERS 1
| #define HAVE_MALLOC 1
| #define HAVE_MATH_H 1
| #define HAVE_FITSIO_H 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply.
| The 'extern "C"' is for builds by C++ compilers;
| although this is not generally supported in C code supporting it here
| has little cost and some practical benefit (sr 110532). */
| #ifdef __cplusplus
| extern "C"
| #endif
| char __oakleaf_MOD_rmean_real64 (void);
| int
| main (void)
| {
| return __oakleaf_MOD_rmean_real64 ();
| ;
| return 0;
| }
configure:7020: result: no
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am_cv_xargs_n_works=yes
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## Output variables. ##
## ----------------- ##
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AMDEPBACKSLASH=''
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AMDEP_TRUE='#'
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## ----------- ##
## confdefs.h. ##
## ----------- ##
/* confdefs.h */
#define PACKAGE_NAME "Munipack"
#define PACKAGE_TARNAME "munipack"
#define PACKAGE_VERSION "0.6.1"
#define PACKAGE_STRING "Munipack 0.6.1"
#define PACKAGE_BUGREPORT "hroch at physics.muni.cz"
#define PACKAGE_URL "https://munipack.physics.muni.cz"
#define PACKAGE_COPYLEFT "(C) 1997-2022 F.Hroch <hroch at physics.muni.cz>"
#define PACKAGE_DESCRIPTION "An astronomical image processing software"
#define PACKAGE "munipack"
#define VERSION "0.6.1"
#define HAVE_STDIO_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_STRINGS_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_UNISTD_H 1
#define STDC_HEADERS 1
#define HAVE_MALLOC 1
#define HAVE_MATH_H 1
#define HAVE_FITSIO_H 1
configure: exit 1
dh_auto_configure: error: ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking returned exit code 1
make: *** [debian/rules:26: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------
The above is just how the build ends and not necessarily the most relevant part.
If required, the full build log is available here:
https://people.debian.org/~sanvila/build-logs/202502/
About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.
If you could not reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:munipack, so that this is still
visible in the BTS web page for this package.
Thanks.
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