[med-svn] r117 - trunk/packages/seaview/trunk/debian

Tue Sep 19 15:47:18 UTC 2006

Author: charles-guest
Date: 2006-09-19 15:47:17 +0000 (Tue, 19 Sep 2006)
New Revision: 117

Added:
   trunk/packages/seaview/trunk/debian/dirs
   trunk/packages/seaview/trunk/debian/seaview.desktop
Modified:
   trunk/packages/seaview/trunk/debian/changelog
   trunk/packages/seaview/trunk/debian/compat
   trunk/packages/seaview/trunk/debian/control
   trunk/packages/seaview/trunk/debian/copyright
   trunk/packages/seaview/trunk/debian/rules
Log:
updated meta-informations and debian/rules

Modified: trunk/packages/seaview/trunk/debian/changelog
===================================================================

--- trunk/packages/seaview/trunk/debian/changelog	2006-09-19 14:37:46 UTC (rev 116)
+++ trunk/packages/seaview/trunk/debian/changelog	2006-09-19 15:47:17 UTC (rev 117)
@@ -1,3 +1,14 @@
+seaview (20060918-1) unstable; urgency=low
+
+  * New upstream release (Closes: #357585)
+  * Uses muscle instead of clustalw, therefore moving to main (Closes: #357587)
+  * Update debian/copyright: the current licence of seaview is GPL (Closes: #357581)
+  * Conforms to Standards version 3.7.2.
+  * Collective maintainance: Debian-Med Packaging Team is the new
+    Maintainer, Brian R Furry and Charles Plessy are uploaders.
+
+ -- Charles Plessy <charles-debian-nospam at plessy.org>  Tue, 19 Sep 2006 23:41:57 +0900
+
 seaview (20021127-4.1) unstable; urgency=medium
 
   * Non-maintainer upload.

Modified: trunk/packages/seaview/trunk/debian/compat
===================================================================
--- trunk/packages/seaview/trunk/debian/compat	2006-09-19 14:37:46 UTC (rev 116)
+++ trunk/packages/seaview/trunk/debian/compat	2006-09-19 15:47:17 UTC (rev 117)
@@ -1 +1 @@
-4
+5

Modified: trunk/packages/seaview/trunk/debian/control
===================================================================
--- trunk/packages/seaview/trunk/debian/control	2006-09-19 14:37:46 UTC (rev 116)
+++ trunk/packages/seaview/trunk/debian/control	2006-09-19 15:47:17 UTC (rev 117)
@@ -1,16 +1,19 @@
 Source: seaview
-Section: contrib/science
+Section: science
 Priority: optional
-Maintainer: Brian R. Furry <bfurry at nac.net>
-Build-Depends: debhelper ( >= 4 ), libfltk1.1-dev (>= 1.1.3-2.1)
-Standards-Version: 3.6.1
+Maintainer: Debian-Med Packaging Team <pkg-emboss-devel at lists.alioth.debian.org>
+Uploaders: Charles Plessy <charles-debian-nospam at plessy.org>, Brian R. Furry <bfurry at nac.net>
+Build-Depends: debhelper ( >= 5  ), libfltk1.1-dev
+Standards-Version: 3.7.2
 
 Package: seaview
 Architecture: any
 Depends: ${shlibs:Depends}
-Recommends: clustalw, xterm | x-terminal-emulator
-Description: [Biology] A multiple sequence alignment editor
- This is a graphical editor to deal with biosequences.  SeaView is able
- to read various alignment formats (MSF, CLUSTAL, FASTA, PHYLIP, MASE,
- NEXUS).  It allows one to manually edit the alignment, and also to run
- ClustalW to locally improve the alignment.
+Recommends: muscle, xterm | x-terminal-emulator
+Description: [Biology] Multiple sequence alignment editor
+ SeaView is a graphical multiple sequence alignment editor developped by Manolo
+ Gouy. SeaView is able to read and write various alignment formats (NEXUS, MSF,
+ CLUSTAL, FASTA, PHYLIP, MASE). It allows to manually edit the alignment, and
+ also to run DOT-PLOT or MUSCLE programs to locally improve the alignment.
+ .
+  Homepage: http://pbil.univ-lyon1.fr/software/seaview.html

Modified: trunk/packages/seaview/trunk/debian/copyright
===================================================================
--- trunk/packages/seaview/trunk/debian/copyright	2006-09-19 14:37:46 UTC (rev 116)
+++ trunk/packages/seaview/trunk/debian/copyright	2006-09-19 15:47:17 UTC (rev 117)
@@ -1,20 +1,32 @@
-This package was debianized by Dr. Guenter Bechly <gbechly at debian.org> on
-Sat,  7 Apr 2001 18:00:30 +0200.
+This package was debianized by Stephane Bortzmeyer <bortzmeyer at debian.org> on
+Mon,  1 Mar 1999 16:41:51 +0100. Please refer to
+/usr/share/doc/seaview/changelog for the list of the subsequent contributors.
+Starting from 2006, the packaging work is hereby placed under the public domain
+unless stated otherwise.
 
-It was downloaded from:
+SeaView was downloaded from:
 ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/
 
-The reference Web page is:
+Its reference Web page is:
 http://pbil.univ-lyon1.fr/software/seaview.html
 
-Upstream Author: Manolo Gouy <mgouy at biomserv.univ-lyon1.fr>
+Copyright (C) 1996-2005 Manolo Gouy <mgouy at biomserv.univ-lyon1.fr>
 
-Copyright: Artistic
+License:
 
-This software is copyright (c) by Manolo Gouy
+   This package is free software; you can redistribute it and/or modify
+   it under the terms of the GNU General Public License as published by
+   the Free Software Foundation; either version 2 of the License, or
+   (at your option) any later version.
 
-You are free to distribute this software under the terms of
-the Artistic Licence.
+   This package is distributed in the hope that it will be useful,
+   but WITHOUT ANY WARRANTY; without even the implied warranty of
+   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+   GNU General Public License for more details.
 
-On Debian systems, the complete text of the Artistic License can be
-found in /usr/share/common-licenses/Artistic.
+   You should have received a copy of the GNU General Public License
+   along with this package; if not, write to the Free Software
+   Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA  02110-1301 USA
+
+On Debian systems, the complete text of the GNU General
+Public License can be found in `/usr/share/common-licenses/GPL'.

Added: trunk/packages/seaview/trunk/debian/dirs
===================================================================
--- trunk/packages/seaview/trunk/debian/dirs	                        (rev 0)
+++ trunk/packages/seaview/trunk/debian/dirs	2006-09-19 15:47:17 UTC (rev 117)
@@ -0,0 +1,2 @@
+/usr/share/pixmaps
+/usr/share/applications

Modified: trunk/packages/seaview/trunk/debian/rules
===================================================================
--- trunk/packages/seaview/trunk/debian/rules	2006-09-19 14:37:46 UTC (rev 116)
+++ trunk/packages/seaview/trunk/debian/rules	2006-09-19 15:47:17 UTC (rev 117)
@@ -1,5 +1,9 @@
 #!/usr/bin/make -f
+# Build rules for the Debian package seaview.
+# Modifications by Charles Plessy during the year 2006
+# are hereby released as "public domain".
 
+
 # These are used for cross-compiling and for saving the configure script
 # from having to guess our platform (since we know it already)
 DEB_HOST_GNU_TYPE   ?= $(shell dpkg-architecture -qDEB_HOST_GNU_TYPE)
@@ -20,7 +24,7 @@
 	dh_testdir
 
 	# Add here commands to compile the package.
-	$(MAKE) OPT="$(CFLAGS)"
+	$(MAKE) OPT="$(CFLAGS)" seaviewps
 
 	touch build-stamp
 
@@ -28,17 +32,14 @@
 	dh_testdir
 	dh_testroot
 	rm -f build-stamp
-
-	# Add here commands to clean up after the build process.
-	$(MAKE) clean
-
+	rm -f *.o seaview
 	dh_clean
 
 install: build
 	dh_testdir
 	dh_testroot
 	dh_clean -k
-	dh_installdirs -v
+	dh_installdirs
 
 	# Add here commands to install the package into debian/<packagename>
 	dh_install
@@ -51,9 +52,8 @@
 	dh_installdocs
 	dh_installexamples examples/*
 	dh_installmenu
+#	dh_desktop
 	dh_installman seaview.1
-	dh_link usr/share/man/man1/seaview.1 \
-		usr/share/man/man1/seaview_align.sh.1
 	dh_strip
 	dh_compress
 	dh_fixperms

Added: trunk/packages/seaview/trunk/debian/seaview.desktop
===================================================================


