[med-svn] r134 - trunk/packages/poa/trunk/debian
Charles Plessy
charles-guest at costa.debian.org
Thu Sep 28 01:54:13 UTC 2006
Author: charles-guest
Date: 2006-09-28 01:54:13 +0000 (Thu, 28 Sep 2006)
New Revision: 134
Added:
trunk/packages/poa/trunk/debian/NEWS
trunk/packages/poa/trunk/debian/README.Debian
Removed:
trunk/packages/poa/trunk/debian/README.debian
trunk/packages/poa/trunk/debian/watch
Modified:
trunk/packages/poa/trunk/debian/changelog
trunk/packages/poa/trunk/debian/poa.1.xml
trunk/packages/poa/trunk/debian/rules
Log:
tidying the packaging, the manpage and the documentation. Uploaded to sponsor
Added: trunk/packages/poa/trunk/debian/NEWS
===================================================================
--- trunk/packages/poa/trunk/debian/NEWS (rev 0)
+++ trunk/packages/poa/trunk/debian/NEWS 2006-09-28 01:54:13 UTC (rev 134)
@@ -0,0 +1,10 @@
+poa (2.0+20060928-1) unstable; urgency=low
+
+ The Debian package version 2.0-1 was built on the upstream sources
+ "poa_release_2_0.tar.gz" which unfortunately contained an earlier 1.x version
+ of poa. The new Debian package version 2.0+20060928-1 is thus a major
+ upgrade. In its version 2.0, poa does not support the same file formats as
+ before. Please refer to the documentation of poa to check wether the options
+ you used before are still existing.
+
+ -- Charles Plessy <charles-debian-nospam at plessy.org> Thu, 28 Sep 2006 10:19:33 +0900
Added: trunk/packages/poa/trunk/debian/README.Debian
===================================================================
--- trunk/packages/poa/trunk/debian/README.Debian (rev 0)
+++ trunk/packages/poa/trunk/debian/README.Debian 2006-09-28 01:54:13 UTC (rev 134)
@@ -0,0 +1,15 @@
+poa for Debian
+--------------
+
+POA needs a matrix file to operate. The matrices shipped in the sources of POA can
+be found in /usr/share/poa/.
+
+You can test POA with the following command:
+
+poa -read_fasta /usr/share/doc/poa/examples/multidom.seq -clustal /dev/stdout -v /usr/share/poa/blosum80.mat
+
+The original POA archive contains a perl script called "make_pscores.pl", which
+can be found in /usr/share/poa. To use it, you need the blastall program,
+provided by the Debian package "blast2".
+
+ -- Charles Plessy <charles-debian-nospam at plessy.org>, Tue, 28 September 2006
Deleted: trunk/packages/poa/trunk/debian/README.debian
===================================================================
--- trunk/packages/poa/trunk/debian/README.debian 2006-09-27 16:33:58 UTC (rev 133)
+++ trunk/packages/poa/trunk/debian/README.debian 2006-09-28 01:54:13 UTC (rev 134)
@@ -1,15 +0,0 @@
-poa for Debian
---------------
-
-POA needs a matrix file to operate. The matrices shipped in the sources of POA can
-be found in /usr/share/poa/.
-
-You can test POA with the following command:
-
-poa -read_fasta /usr/share/doc/poa/examples/multidom.seq -clustal /dev/stdout -v /usr/share/poa/blosum80.mat
-
-The original POA archive contains a perl script called "make_pscores.pl", which
-can be found in /usr/share/poa. To use it, you need the blastall program,
-provided by the Debian package "blast2".
-
- -- Charles Plessy <charles-debian-nospam at plessy.org>, Tue, 24 September 2006
Modified: trunk/packages/poa/trunk/debian/changelog
===================================================================
--- trunk/packages/poa/trunk/debian/changelog 2006-09-27 16:33:58 UTC (rev 133)
+++ trunk/packages/poa/trunk/debian/changelog 2006-09-28 01:54:13 UTC (rev 134)
@@ -1,9 +1,11 @@
-poa (2.0-2) unstable; urgency=low
+poa (2.0+20060928-1) unstable; urgency=low
- * New upstream version.
+ * New upstream version. THE PREVIOUS VERSION WAS NOT 2.0.
+ * Updated manpage.
* Added a test rule.
+ * Removed the watch file.
- -- Charles Plessy <charles-debian-nospam at plessy.org> Tue, 26 Sep 2006 11:17:41 +0900
+ -- Charles Plessy <charles-debian-nospam at plessy.org> Thu, 28 Sep 2006 10:21:43 +0900
poa (2.0-1) unstable; urgency=low
Modified: trunk/packages/poa/trunk/debian/poa.1.xml
===================================================================
--- trunk/packages/poa/trunk/debian/poa.1.xml 2006-09-27 16:33:58 UTC (rev 133)
+++ trunk/packages/poa/trunk/debian/poa.1.xml 2006-09-28 01:54:13 UTC (rev 134)
@@ -62,8 +62,10 @@
</refsect1>
<refsect1>
- <title>EXAMPLE</title>
+ <title>EXAMPLES</title>
<para><command>poa</command> <option>-read_fasta</option> <filename>multidom.seq</filename> <option>-clustal</option> <filename>m.aln</filename> <filename>blosum80.mat</filename></para>
+ <para>On Debian systems, <command>poa</command> can be tested using the following command:</para>
+ <para><command>poa</command> <option>-read_fasta</option> <filename>/usr/share/doc/poa/examples/multidom.seq</filename> <option>-clustal</option> <filename>/dev/stdout</filename> <option>-v</option> <filename>/usr/share/poa/blosum80.mat</filename></para>
</refsect1>
<refsect1>
Modified: trunk/packages/poa/trunk/debian/rules
===================================================================
--- trunk/packages/poa/trunk/debian/rules 2006-09-27 16:33:58 UTC (rev 133)
+++ trunk/packages/poa/trunk/debian/rules 2006-09-28 01:54:13 UTC (rev 134)
@@ -8,6 +8,7 @@
# Modifications by Charles Plessy during the year 2006
# are hereby released as "public domain"
+PROGRAM_NAME = poa
CFLAGS = -Wall -g
@@ -19,18 +20,20 @@
build-stamp: build
-build:
+build: debian/$(PROGRAM_NAME).1
dh_testdir
- $(MAKE) poa
- xsltproc -o debian/ -''-nonet /usr/share/xml/docbook/stylesheet/nwalsh/manpages/docbook.xsl debian/poa.1.xml
+ $(MAKE) $(PROGRAM_NAME)
touch build-stamp
+debian/$(PROGRAM_NAME).1: debian/$(PROGRAM_NAME).1.xml
+ xsltproc -o debian/ -''-nonet /usr/share/xml/docbook/stylesheet/nwalsh/manpages/docbook.xsl debian/$(PROGRAM_NAME).1.xml
+
clean:
dh_testdir
dh_testroot
rm -f build-stamp
-$(MAKE) clean
- dh_clean debian/poa.1
+ dh_clean debian/$(PROGRAM_NAME).1
test:
./poa -read_fasta multidom.seq -clustal /dev/stdout -v blosum80.mat
@@ -50,7 +53,7 @@
dh_installdocs README
dh_installexamples multidom.seq
dh_install
- dh_installman debian/poa.1
+ dh_installman debian/$(PROGRAM_NAME).1
dh_link
dh_strip
dh_compress
Deleted: trunk/packages/poa/trunk/debian/watch
===================================================================
--- trunk/packages/poa/trunk/debian/watch 2006-09-27 16:33:58 UTC (rev 133)
+++ trunk/packages/poa/trunk/debian/watch 2006-09-28 01:54:13 UTC (rev 134)
@@ -1,6 +0,0 @@
-version=3
-
-# Uncomment to find new files on sourceforge, for debscripts >= 2.9
- http://sf.net/poamsa/poa_release_(.*)_(.*)\.tar\.gz
-
-
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