[med-svn] r241 - in trunk/packages/probcons/trunk: . debian debian/patches

[Charles Plessy]

Author: charles-guest
Date: 2007-04-04 00:12:17 +0000 (Wed, 04 Apr 2007)
New Revision: 241

Modified:
   trunk/packages/probcons/trunk/Main.cc
   trunk/packages/probcons/trunk/MakeGnuPlot.cc
   trunk/packages/probcons/trunk/Makefile
   trunk/packages/probcons/trunk/README
   trunk/packages/probcons/trunk/debian/changelog
   trunk/packages/probcons/trunk/debian/patches/10_add-RNA-in-Makefile.dpatch
Log:
Fixing FTBFS in gcc4.3

Modified: trunk/packages/probcons/trunk/Main.cc
===================================================================
--- trunk/packages/probcons/trunk/Main.cc	2007-04-04 00:06:32 UTC (rev 240)
+++ trunk/packages/probcons/trunk/Main.cc	2007-04-04 00:12:17 UTC (rev 241)
@@ -18,6 +18,7 @@
 #include <list>
 #include <set>
 #include <algorithm>
+#include <climits>
 #include <cstdio>
 #include <cstdlib>
 #include <cerrno>

Modified: trunk/packages/probcons/trunk/MakeGnuPlot.cc
===================================================================
--- trunk/packages/probcons/trunk/MakeGnuPlot.cc	2007-04-04 00:06:32 UTC (rev 240)
+++ trunk/packages/probcons/trunk/MakeGnuPlot.cc	2007-04-04 00:12:17 UTC (rev 241)
@@ -2,6 +2,7 @@
 // MakeGnuPlot.cc
 /////////////////////////////////////////////////////////////////
 
+#include <cstdlib>
 #include <iostream>
 #include <fstream>
 

Modified: trunk/packages/probcons/trunk/Makefile
===================================================================
--- trunk/packages/probcons/trunk/Makefile	2007-04-04 00:06:32 UTC (rev 240)
+++ trunk/packages/probcons/trunk/Makefile	2007-04-04 00:12:17 UTC (rev 241)
@@ -15,7 +15,7 @@
 #    c) RELEASE mode
 ################################################################################
 
-OTHERFLAGS = -DNumInsertStates=2 -DVERSION="1.11"
+OTHERFLAGS = -DNumInsertStates=2 -DVERSION="1.12"
 
 # debug mode    
 #CXXFLAGS = -g -W -Wall -pedantic -DENABLE_CHECKS -fno-inline $(OTHERFLAGS)

Modified: trunk/packages/probcons/trunk/README
===================================================================
--- trunk/packages/probcons/trunk/README	2007-04-04 00:06:32 UTC (rev 240)
+++ trunk/packages/probcons/trunk/README	2007-04-04 00:12:17 UTC (rev 241)
@@ -107,4 +107,7 @@
       -- restricting consistency-derived posterior matrices to original posterior matrix
 
 1.11, 12/1/2006 (Chuong Do)
-   -- Fixed bug with conflict between --annot and -a options
\ No newline at end of file
+   -- Fixed bug with conflict between --annot and -a options
+
+1.12, 4/1/2006 (Chuong Do)
+   -- Fixed GCC 4.3 compatibility problems (thanks to Martin Michlmayr and Charles Plessy)
\ No newline at end of file

Modified: trunk/packages/probcons/trunk/debian/changelog
===================================================================
--- trunk/packages/probcons/trunk/debian/changelog	2007-04-04 00:06:32 UTC (rev 240)
+++ trunk/packages/probcons/trunk/debian/changelog	2007-04-04 00:12:17 UTC (rev 241)
@@ -1,9 +1,10 @@
-probcons (1.11-2) unstable; urgency=low
+probcons (1.12-1) unstable; urgency=low
 
+  * New upstream release, buildable with gcc 4.3 (Closes: #417482)
   * Add Subversion repository URL to debian/control.
   * Including /usr/share/dpatch/dpatch.make in debian/rules.
 
- -- Charles Plessy <charles-debian-nospam at plessy.org>  Sat, 10 Mar 2007 14:28:56 +0900
+ -- Charles Plessy <charles-debian-nospam at plessy.org>  Wed,  4 Apr 2007 09:08:31 +0900
 
 probcons (1.11-1) unstable; urgency=low
 

Modified: trunk/packages/probcons/trunk/debian/patches/10_add-RNA-in-Makefile.dpatch
===================================================================
--- trunk/packages/probcons/trunk/debian/patches/10_add-RNA-in-Makefile.dpatch	2007-04-04 00:06:32 UTC (rev 240)
+++ trunk/packages/probcons/trunk/debian/patches/10_add-RNA-in-Makefile.dpatch	2007-04-04 00:12:17 UTC (rev 241)
@@ -12,8 +12,8 @@
 @@ -16,6 +16,7 @@
  ################################################################################
  
- OTHERFLAGS = -DNumInsertStates=2 -DVERSION="1.11"
-+OTHERFLAGS-RNA = -DNumInsertStates=1 -DVERSION="1.11"
+ OTHERFLAGS = -DNumInsertStates=2 -DVERSION="1.12"
++OTHERFLAGS-RNA = -DNumInsertStates=1 -DVERSION="1.12"
  
  # debug mode    
  #CXXFLAGS = -g -W -Wall -pedantic -DENABLE_CHECKS -fno-inline $(OTHERFLAGS)