[med-svn] r911 - in trunk/packages/mgltools/autodocktools/trunk: . debian
smoe-guest at alioth.debian.org
smoe-guest at alioth.debian.org
Thu Dec 20 20:56:24 UTC 2007
Author: smoe-guest
Date: 2007-12-20 20:56:24 +0000 (Thu, 20 Dec 2007)
New Revision: 911
Added:
trunk/packages/mgltools/autodocktools/trunk/debian/
trunk/packages/mgltools/autodocktools/trunk/debian/README.Debian
trunk/packages/mgltools/autodocktools/trunk/debian/autodocktools.postinst.debhelper
trunk/packages/mgltools/autodocktools/trunk/debian/autodocktools.prerm.debhelper
trunk/packages/mgltools/autodocktools/trunk/debian/autodocktools.substvars
trunk/packages/mgltools/autodocktools/trunk/debian/changelog
trunk/packages/mgltools/autodocktools/trunk/debian/compat
trunk/packages/mgltools/autodocktools/trunk/debian/control
trunk/packages/mgltools/autodocktools/trunk/debian/copyright
trunk/packages/mgltools/autodocktools/trunk/debian/dirs
trunk/packages/mgltools/autodocktools/trunk/debian/docs
trunk/packages/mgltools/autodocktools/trunk/debian/menu
trunk/packages/mgltools/autodocktools/trunk/debian/pycompat
trunk/packages/mgltools/autodocktools/trunk/debian/rules
Log:
[svn-inject] Applying Debian modifications to trunk
Property changes on: trunk/packages/mgltools/autodocktools/trunk/debian
___________________________________________________________________
Name: mergeWithUpstream
+ 1
Added: trunk/packages/mgltools/autodocktools/trunk/debian/README.Debian
===================================================================
--- trunk/packages/mgltools/autodocktools/trunk/debian/README.Debian (rev 0)
+++ trunk/packages/mgltools/autodocktools/trunk/debian/README.Debian 2007-12-20 20:56:24 UTC (rev 911)
@@ -0,0 +1,10 @@
+autodocktools for Debian
+------------------------
+
+This package aims at providing the complete infrastructure for
+ligand screening with Debian Linux.
+
+The autodocktools.orig.tar.gz is part of the MGLTools package
+and as such not directly retrievable online.
+
+ -- Steffen Moeller <moeller at debian.org> Thu, 20 Dec 2007 16:27:31 +0100
Added: trunk/packages/mgltools/autodocktools/trunk/debian/autodocktools.postinst.debhelper
===================================================================
--- trunk/packages/mgltools/autodocktools/trunk/debian/autodocktools.postinst.debhelper (rev 0)
+++ trunk/packages/mgltools/autodocktools/trunk/debian/autodocktools.postinst.debhelper 2007-12-20 20:56:24 UTC (rev 911)
@@ -0,0 +1,5 @@
+# Automatically added by dh_pycentral
+if which pycentral >/dev/null 2>&1; then
+ pycentral pkginstall autodocktools
+fi
+# End automatically added section
Added: trunk/packages/mgltools/autodocktools/trunk/debian/autodocktools.prerm.debhelper
===================================================================
--- trunk/packages/mgltools/autodocktools/trunk/debian/autodocktools.prerm.debhelper (rev 0)
+++ trunk/packages/mgltools/autodocktools/trunk/debian/autodocktools.prerm.debhelper 2007-12-20 20:56:24 UTC (rev 911)
@@ -0,0 +1,26 @@
+# Automatically added by dh_pycentral
+if which python >/dev/null 2>&1 && which pycentral >/dev/null 2>&1; then
+ pycentral pkgremove autodocktools
+else
+ flist=$(tempfile)
+ find /usr/share/pycentral/autodocktools -depth -mindepth 2 \
+ \( -name '*.py' -printf 'p %P\n' -o -printf '%y %P\n' \) \
+ > $flist 2>/dev/null || true
+ if [ -s $flist ]; then
+ for d in /usr/lib/python[0-9].[0-9]; do
+ case "$d" in */python2.1|*/python2.2) continue; esac
+ while read t n; do
+ case "$t" in
+ p) rm -f $d/$n $d/${n}[co];;
+ d) rmdir $d/$n 2>/dev/null || true;;
+ *) rm -f $d/$n
+ esac
+ done < $flist
+ done
+ fi
+ rm -f $flist
+ dpkg -L autodocktools \
+ | awk '/\/usr\/share\/pycentral/ {next} /\.py$/ {print $0"c\n" $0"o"}' \
+ | xargs rm -f >&2
+fi
+# End automatically added section
Added: trunk/packages/mgltools/autodocktools/trunk/debian/autodocktools.substvars
===================================================================
--- trunk/packages/mgltools/autodocktools/trunk/debian/autodocktools.substvars (rev 0)
+++ trunk/packages/mgltools/autodocktools/trunk/debian/autodocktools.substvars 2007-12-20 20:56:24 UTC (rev 911)
@@ -0,0 +1,2 @@
+python:Versions=current
+python:Depends=python2.4, python, python-central (>= 0.5.8), python2.3
Added: trunk/packages/mgltools/autodocktools/trunk/debian/changelog
===================================================================
--- trunk/packages/mgltools/autodocktools/trunk/debian/changelog (rev 0)
+++ trunk/packages/mgltools/autodocktools/trunk/debian/changelog 2007-12-20 20:56:24 UTC (rev 911)
@@ -0,0 +1,6 @@
+autodocktools (1.4.5-1) unstable; urgency=low
+
+ * Initial release.
+
+ -- Steffen Moeller <moeller at debian.org> Thu, 20 Dec 2007 16:27:31 +0100
+
Added: trunk/packages/mgltools/autodocktools/trunk/debian/compat
===================================================================
--- trunk/packages/mgltools/autodocktools/trunk/debian/compat (rev 0)
+++ trunk/packages/mgltools/autodocktools/trunk/debian/compat 2007-12-20 20:56:24 UTC (rev 911)
@@ -0,0 +1 @@
+5
Added: trunk/packages/mgltools/autodocktools/trunk/debian/control
===================================================================
--- trunk/packages/mgltools/autodocktools/trunk/debian/control (rev 0)
+++ trunk/packages/mgltools/autodocktools/trunk/debian/control 2007-12-20 20:56:24 UTC (rev 911)
@@ -0,0 +1,20 @@
+Source: autodocktools
+Section: non-free/science
+Priority: optional
+Maintainer: Steffen Moeller <moeller at debian.org>
+Build-Depends: debhelper (>= 5.0.38), python-central (>= 0.5.6), cdbs (>= 0.4.49), python-all-dev (>= 2.3.5-11)
+Standards-Version: 3.7.2
+XS-Python-Version: current
+Homepage: http://autodock.scripps.edu/
+
+Package: mgltools-autodocktools
+XB-Python-Version: ${python:Versions}
+Architecture: all
+Depends: ${shlibs:Depends}, ${misc:Depends}, ${python:Depends}, mgltools-support, mgltools-pmv
+Suggests: autodock
+Description: GUI to help set up, launch and analyze AutoDock dockings
+ AutoDock is a well established package for the automated screening of
+ libraries of formal representation of chemical compounds that putatively
+ bind to a particular protein at hand. This package provides a graphical
+ user interface that is helping with the preparation of the protein
+ for such analyses.
Added: trunk/packages/mgltools/autodocktools/trunk/debian/copyright
===================================================================
--- trunk/packages/mgltools/autodocktools/trunk/debian/copyright (rev 0)
+++ trunk/packages/mgltools/autodocktools/trunk/debian/copyright 2007-12-20 20:56:24 UTC (rev 911)
@@ -0,0 +1,46 @@
+This package was debianized by Steffen Moeller <moeller at debian.org> on
+Thu, 20 Dec 2007 16:27:31 +0100.
+
+It was downloaded from http://autodock.scripps.edu
+
+Upstream Authors:
+
+ Molecular Graphics Laboratory <mgltools at scripps.edu>
+
+Copyright:
+
+ THE SCRIPPS RESEARCH INSTITUTE, <sanner at scripps.edu>
+
+License:
+
+ PLEASE READ THIS DOCUMENT CAREFULLY. IF YOU AGREE WITH THE TERMS
+ AND CONDITIONS OF THIS LICENSE AGREEMENT, AND WISH TO RECEIVE AND
+ USE THIS SOFTWARE.
+
+ 1. Grant Of Limited License; Software Use Restrictions. The programs
+ received by you will be used only for NON COMMERCIAL SCIENTIFIC
+ RESEARCH. This license is issued to you as an individual. For
+ institution wide use or commercial use of the software you will
+ have to follow the official registration procedure. To do so you can
+ contact us by e-mail (sanner at scripps.edu), by mail (Michel Sanner,
+ TSRI, Molecular Biology Department, MB5, 10666 North Torrey Pines
+ Road, 92037 La Jolla) or by fax (858) 784-2860.
+
+ Some of the components have their own licensing specificities
+ that are described in the README file that is generated when you
+ download the software. We request that you read the content of
+ this file and comply to the requirements.
+ 2. Copying Restrictions. You will not sell or otherwise transfer these
+ programs or derivatives to any other party, whether with or
+ without consideration, for any purpose.
+ 3. Ownership of Software. You will not obtain, and will not attempt to
+ obtain copyright coverage thereon without the express purpose
+ written consent of The Scripps Research Institute.
+ 4. Limitation Of Liability. You will hold harmless from all or any expenses
+ you may incur as a result of or arising from your use, direct or indirect,
+ of these materials. You understand that no other right or license
+ to this program or its derivatives is granted or implied as a
+ result of our transmission of same to you.
+
+The Debian packaging is (C) 2007, Steffen Moeller <moeller at debian.org> and
+is licensed under the GPL, see `/usr/share/common-licenses/GPL'.
Added: trunk/packages/mgltools/autodocktools/trunk/debian/dirs
===================================================================
--- trunk/packages/mgltools/autodocktools/trunk/debian/dirs (rev 0)
+++ trunk/packages/mgltools/autodocktools/trunk/debian/dirs 2007-12-20 20:56:24 UTC (rev 911)
@@ -0,0 +1,2 @@
+usr/bin
+usr/sbin
Added: trunk/packages/mgltools/autodocktools/trunk/debian/docs
===================================================================
--- trunk/packages/mgltools/autodocktools/trunk/debian/docs (rev 0)
+++ trunk/packages/mgltools/autodocktools/trunk/debian/docs 2007-12-20 20:56:24 UTC (rev 911)
@@ -0,0 +1 @@
+AutoDockTools/RELNOTES
Added: trunk/packages/mgltools/autodocktools/trunk/debian/menu
===================================================================
--- trunk/packages/mgltools/autodocktools/trunk/debian/menu (rev 0)
+++ trunk/packages/mgltools/autodocktools/trunk/debian/menu 2007-12-20 20:56:24 UTC (rev 911)
@@ -0,0 +1,2 @@
+?package(autodocktools):needs="X11" section="Applications/Science"\
+ title="AutoDockTools" command="/usr/bin/runAdt"
Added: trunk/packages/mgltools/autodocktools/trunk/debian/pycompat
===================================================================
--- trunk/packages/mgltools/autodocktools/trunk/debian/pycompat (rev 0)
+++ trunk/packages/mgltools/autodocktools/trunk/debian/pycompat 2007-12-20 20:56:24 UTC (rev 911)
@@ -0,0 +1 @@
+2
Added: trunk/packages/mgltools/autodocktools/trunk/debian/rules
===================================================================
--- trunk/packages/mgltools/autodocktools/trunk/debian/rules (rev 0)
+++ trunk/packages/mgltools/autodocktools/trunk/debian/rules 2007-12-20 20:56:24 UTC (rev 911)
@@ -0,0 +1,19 @@
+#!/usr/bin/make -f
+# -*- makefile -*-
+# Sample debian/rules that uses debhelper.
+# This file was originally written by Joey Hess and Craig Small.
+# As a special exception, when this file is copied by dh-make into a
+# dh-make output file, you may use that output file without restriction.
+# This special exception was added by Craig Small in version 0.37 of dh-make.
+
+# Uncomment this to turn on verbose mode.
+#export DH_VERBOSE=1
+
+export DEB_PYTHON_SYSTEM=pycentral
+
+include /usr/share/cdbs/1/rules/debhelper.mk
+include /usr/share/cdbs/1/class/python-distutils.mk
+#include /usr/share/cdbs/1/rules/simple-patchsys.mk
+
+clean::
+ rm -rf build build-stamp
Property changes on: trunk/packages/mgltools/autodocktools/trunk/debian/rules
___________________________________________________________________
Name: svn:executable
+ *
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