[med-svn] r1029 - trunk/packages/autodocksuite/trunk/debian

smoe-guest at alioth.debian.org smoe-guest at alioth.debian.org
Wed Dec 26 22:59:38 UTC 2007


Author: smoe-guest
Date: 2007-12-26 22:59:37 +0000 (Wed, 26 Dec 2007)
New Revision: 1029

Added:
   trunk/packages/autodocksuite/trunk/debian/autodock.dirs
   trunk/packages/autodocksuite/trunk/debian/autodock.manpages
   trunk/packages/autodocksuite/trunk/debian/autodock4.1
   trunk/packages/autodocksuite/trunk/debian/autogrid.dirs
   trunk/packages/autodocksuite/trunk/debian/autogrid.manpages
   trunk/packages/autodocksuite/trunk/debian/autogrid4.1
Removed:
   trunk/packages/autodocksuite/trunk/debian/dirs
   trunk/packages/autodocksuite/trunk/debian/manpage.1.ex
   trunk/packages/autodocksuite/trunk/debian/manpage.sgml.ex
   trunk/packages/autodocksuite/trunk/debian/manpage.xml.ex
Modified:
   trunk/packages/autodocksuite/trunk/debian/README.Debian
   trunk/packages/autodocksuite/trunk/debian/rules
Log:
* Serious updates that should render autogrid and autodock usable.
  - lintian-clean
  - better README.Debian
  - some stupid fixes


Modified: trunk/packages/autodocksuite/trunk/debian/README.Debian
===================================================================
--- trunk/packages/autodocksuite/trunk/debian/README.Debian	2007-12-26 22:27:23 UTC (rev 1028)
+++ trunk/packages/autodocksuite/trunk/debian/README.Debian	2007-12-26 22:59:37 UTC (rev 1029)
@@ -1,10 +1,30 @@
 autodocksuite for Debian
 ------------------------
 
-The set of programs that are more prone to be used by the user directly are located in a separate package, the AutoDockTools. These are far more difficult to pack.
+AutoDock is a prime representative of the programs addressing the
+simulation of the docking of fairly small chemical ligands to
+rather big protein receptors. Earlier versions had all flexibility
+in the ligands while the protein was kept rather ridgid. This latest
+version 4 also allows for a flexibility of the sidechains of surface
+residues, i.e., takes the rotamers into account.
 
-This package still needs to be OKed by upstream.
+This package was not yet tested in practice. Please give respective
+feedback. You may find other spots where to help with packaging. The
+Debian-Med community is very friendly and open towards collaborative
+package maintenance, just say hello. The compiles smoothly on AMD64, more
+reports are welcome.
 
+The set of programs that are more prone to be used by the user directly
+are located in a separate package, the AutoDockTools. These are far more
+difficult to pack. A first attempt is available on Debian-Med underneath
+the packages/mgltools folder. More information is in the README at the
+same location.
+
+This package still needs to be OKed by upstream. Scripps requests
+registrations prior to the download of the tarball, which, to some
+degree indicates that the direct distribution via Debian may not in
+their interest.
+
 Steffen
 
- -- Steffen Moeller <steffen_moeller at gmx.de>  Mon, 23 Jul 2007 16:41:48 +0200
+ -- Steffen Moeller <moeller at debian.org>  Wed, 26 Dec 2007 18:41:48 +0100

Added: trunk/packages/autodocksuite/trunk/debian/autodock.dirs
===================================================================
--- trunk/packages/autodocksuite/trunk/debian/autodock.dirs	                        (rev 0)
+++ trunk/packages/autodocksuite/trunk/debian/autodock.dirs	2007-12-26 22:59:37 UTC (rev 1029)
@@ -0,0 +1,2 @@
+usr/bin
+usr/share/doc/autodock

Added: trunk/packages/autodocksuite/trunk/debian/autodock.manpages
===================================================================
--- trunk/packages/autodocksuite/trunk/debian/autodock.manpages	                        (rev 0)
+++ trunk/packages/autodocksuite/trunk/debian/autodock.manpages	2007-12-26 22:59:37 UTC (rev 1029)
@@ -0,0 +1 @@
+debian/autodock4.1

Added: trunk/packages/autodocksuite/trunk/debian/autodock4.1
===================================================================
--- trunk/packages/autodocksuite/trunk/debian/autodock4.1	                        (rev 0)
+++ trunk/packages/autodocksuite/trunk/debian/autodock4.1	2007-12-26 22:59:37 UTC (rev 1029)
@@ -0,0 +1,68 @@
+.\"                                      Hey, EMACS: -*- nroff -*-
+.\" First parameter, NAME, should be all caps
+.\" Second parameter, SECTION, should be 1-8, maybe w/ subsection
+.\" other parameters are allowed: see man(7), man(1)
+.TH AUTODOCK 1 "Juli 23, 2007"
+.\" Please adjust this date whenever revising the manpage.
+.\"
+.\" Some roff macros, for reference:
+.\" .nh        disable hyphenation
+.\" .hy        enable hyphenation
+.\" .ad l      left justify
+.\" .ad b      justify to both left and right margins
+.\" .nf        disable filling
+.\" .fi        enable filling
+.\" .br        insert line break
+.\" .sp <n>    insert n+1 empty lines
+.\" for manpage-specific macros, see man(7)
+.SH NAME
+autodock \- docking of chemical ligands to protein receptors
+.SH SYNOPSIS
+.B autodock4
+.RI [ options ] " files" ...
+.SH DESCRIPTION
+The maintainer of the Debian package does not yet feel sufficiently competent to prepare this man page. Please help.
+.PP
+.\" TeX users may be more comfortable with the \fB<whatever>\fP and
+.\" \fI<whatever>\fP escape sequences to invode bold face and italics, 
+.\" respectively.
+.SH OPTIONS
+.TP
+.B \-p
+.RI parameter_filename
+.TP
+.B \-l
+.RI log_filename
+.TP
+.B \-o
+(Use old PDBQ format, charge q in columns 55-61)
+.TP
+.B \-k
+(Keep original residue numbers)
+.TP
+.B \-i
+(Ignore header-checking)
+.TP
+.B \-t
+(Parse the PDBQ file to check torsions, then stop.)
+.TP
+.B \-c < 
+.RI command_file
+(Command mode, by file)
+.TP
+.B \-c |
+.RI control_program
+(Command mode, by control_program)
+.SH SEE ALSO
+.BR autogrid (1),
+.BR runAdt (1).
+.br
+http://autodock.scripps.edu
+.SH AUTHOR
+The most prominent author of the version 4 of autodock is G. Morris
+<garrett at scripps.edu>. See the AUTHORS file in /usr/share/doc/autodock
+for details.
+.PP
+This manual page was written by Steffen Moeller <moeller at debian.org>,
+for the Debian project (but may be used by others and is hopefully
+adopted by the upstream developers).

Added: trunk/packages/autodocksuite/trunk/debian/autogrid.dirs
===================================================================
--- trunk/packages/autodocksuite/trunk/debian/autogrid.dirs	                        (rev 0)
+++ trunk/packages/autodocksuite/trunk/debian/autogrid.dirs	2007-12-26 22:59:37 UTC (rev 1029)
@@ -0,0 +1,2 @@
+usr/bin
+usr/share/doc/autogrid

Added: trunk/packages/autodocksuite/trunk/debian/autogrid.manpages
===================================================================
--- trunk/packages/autodocksuite/trunk/debian/autogrid.manpages	                        (rev 0)
+++ trunk/packages/autodocksuite/trunk/debian/autogrid.manpages	2007-12-26 22:59:37 UTC (rev 1029)
@@ -0,0 +1 @@
+debian/autogrid4.1

Added: trunk/packages/autodocksuite/trunk/debian/autogrid4.1
===================================================================
--- trunk/packages/autodocksuite/trunk/debian/autogrid4.1	                        (rev 0)
+++ trunk/packages/autodocksuite/trunk/debian/autogrid4.1	2007-12-26 22:59:37 UTC (rev 1029)
@@ -0,0 +1,44 @@
+.\"                                      Hey, EMACS: -*- nroff -*-
+.\" First parameter, NAME, should be all caps
+.\" Second parameter, SECTION, should be 1-8, maybe w/ subsection
+.\" other parameters are allowed: see man(7), man(1)
+.TH AUTOGRID 1 "Juli 23, 2007"
+.\" Please adjust this date whenever revising the manpage.
+.\"
+.\" Some roff macros, for reference:
+.\" .nh        disable hyphenation
+.\" .hy        enable hyphenation
+.\" .ad l      left justify
+.\" .ad b      justify to both left and right margins
+.\" .nf        disable filling
+.\" .fi        enable filling
+.\" .br        insert line break
+.\" .sp <n>    insert n+1 empty lines
+.\" for manpage-specific macros, see man(7)
+.SH NAME
+autogrid \- preparing protein and ligand for autodock analysis
+.SH SYNOPSIS
+.B autogrid4
+.RI [ options ] " files" ...
+.SH DESCRIPTION
+The maintainer of the Debian package does not yet feel sufficiently competent to prepare this man page. Please help.
+.PP
+.\" TeX users may be more comfortable with the \fB<whatever>\fP and
+.\" \fI<whatever>\fP escape sequences to invode bold face and italics, 
+.\" respectively.
+.SH OPTIONS
+completely unknown.
+
+.SH SEE ALSO
+.BR autodock (1),
+.BR runAdt (1).
+.br
+http://autodock.scripps.edu
+.SH AUTHOR
+The most prominent author of the version 4 of autodock is G. Morris
+<garrett at scripps.edu>. See the AUTHORS file in /usr/share/doc/autogrid
+for details.
+.PP
+This manual page was written by Steffen Moeller <moeller at debian.org>,
+for the Debian project (but may be used by others and is hopefully
+adopted by the upstream developers).

Deleted: trunk/packages/autodocksuite/trunk/debian/dirs
===================================================================
--- trunk/packages/autodocksuite/trunk/debian/dirs	2007-12-26 22:27:23 UTC (rev 1028)
+++ trunk/packages/autodocksuite/trunk/debian/dirs	2007-12-26 22:59:37 UTC (rev 1029)
@@ -1,2 +0,0 @@
-usr/bin
-usr/sbin

Deleted: trunk/packages/autodocksuite/trunk/debian/manpage.1.ex
===================================================================
--- trunk/packages/autodocksuite/trunk/debian/manpage.1.ex	2007-12-26 22:27:23 UTC (rev 1028)
+++ trunk/packages/autodocksuite/trunk/debian/manpage.1.ex	2007-12-26 22:59:37 UTC (rev 1029)
@@ -1,59 +0,0 @@
-.\"                                      Hey, EMACS: -*- nroff -*-
-.\" First parameter, NAME, should be all caps
-.\" Second parameter, SECTION, should be 1-8, maybe w/ subsection
-.\" other parameters are allowed: see man(7), man(1)
-.TH AUTODOCKSUITE SECTION "Juli 23, 2007"
-.\" Please adjust this date whenever revising the manpage.
-.\"
-.\" Some roff macros, for reference:
-.\" .nh        disable hyphenation
-.\" .hy        enable hyphenation
-.\" .ad l      left justify
-.\" .ad b      justify to both left and right margins
-.\" .nf        disable filling
-.\" .fi        enable filling
-.\" .br        insert line break
-.\" .sp <n>    insert n+1 empty lines
-.\" for manpage-specific macros, see man(7)
-.SH NAME
-autodocksuite \- program to do something
-.SH SYNOPSIS
-.B autodocksuite
-.RI [ options ] " files" ...
-.br
-.B bar
-.RI [ options ] " files" ...
-.SH DESCRIPTION
-This manual page documents briefly the
-.B autodocksuite
-and
-.B bar
-commands.
-.PP
-.\" TeX users may be more comfortable with the \fB<whatever>\fP and
-.\" \fI<whatever>\fP escape sequences to invode bold face and italics, 
-.\" respectively.
-\fBautodocksuite\fP is a program that...
-.SH OPTIONS
-These programs follow the usual GNU command line syntax, with long
-options starting with two dashes (`-').
-A summary of options is included below.
-For a complete description, see the Info files.
-.TP
-.B \-h, \-\-help
-Show summary of options.
-.TP
-.B \-v, \-\-version
-Show version of program.
-.SH SEE ALSO
-.BR bar (1),
-.BR baz (1).
-.br
-The programs are documented fully by
-.IR "The Rise and Fall of a Fooish Bar" ,
-available via the Info system.
-.SH AUTHOR
-autodocksuite was written by <upstream author>.
-.PP
-This manual page was written by Steffen Moeller <steffen_moeller at gmx.de>,
-for the Debian project (but may be used by others).

Deleted: trunk/packages/autodocksuite/trunk/debian/manpage.sgml.ex
===================================================================
--- trunk/packages/autodocksuite/trunk/debian/manpage.sgml.ex	2007-12-26 22:27:23 UTC (rev 1028)
+++ trunk/packages/autodocksuite/trunk/debian/manpage.sgml.ex	2007-12-26 22:59:37 UTC (rev 1029)
@@ -1,156 +0,0 @@
-<!doctype refentry PUBLIC "-//OASIS//DTD DocBook V4.1//EN" [
-
-<!-- Process this file with docbook-to-man to generate an nroff manual
-     page: `docbook-to-man manpage.sgml > manpage.1'.  You may view
-     the manual page with: `docbook-to-man manpage.sgml | nroff -man |
-     less'.  A typical entry in a Makefile or Makefile.am is:
-
-manpage.1: manpage.sgml
-	docbook-to-man $< > $@
-
-    
-	The docbook-to-man binary is found in the docbook-to-man package.
-	Please remember that if you create the nroff version in one of the
-	debian/rules file targets (such as build), you will need to include
-	docbook-to-man in your Build-Depends control field.
-
-  -->
-
-  <!-- Fill in your name for FIRSTNAME and SURNAME. -->
-  <!ENTITY dhfirstname "<firstname>FIRSTNAME</firstname>">
-  <!ENTITY dhsurname   "<surname>SURNAME</surname>">
-  <!-- Please adjust the date whenever revising the manpage. -->
-  <!ENTITY dhdate      "<date>Juli 23, 2007</date>">
-  <!-- SECTION should be 1-8, maybe w/ subsection other parameters are
-       allowed: see man(7), man(1). -->
-  <!ENTITY dhsection   "<manvolnum>SECTION</manvolnum>">
-  <!ENTITY dhemail     "<email>steffen_moeller at gmx.de</email>">
-  <!ENTITY dhusername  "Steffen Moeller">
-  <!ENTITY dhucpackage "<refentrytitle>AUTODOCKSUITE</refentrytitle>">
-  <!ENTITY dhpackage   "autodocksuite">
-
-  <!ENTITY debian      "<productname>Debian</productname>">
-  <!ENTITY gnu         "<acronym>GNU</acronym>">
-  <!ENTITY gpl         "&gnu; <acronym>GPL</acronym>">
-]>
-
-<refentry>
-  <refentryinfo>
-    <address>
-      &dhemail;
-    </address>
-    <author>
-      &dhfirstname;
-      &dhsurname;
-    </author>
-    <copyright>
-      <year>2003</year>
-      <holder>&dhusername;</holder>
-    </copyright>
-    &dhdate;
-  </refentryinfo>
-  <refmeta>
-    &dhucpackage;
-
-    &dhsection;
-  </refmeta>
-  <refnamediv>
-    <refname>&dhpackage;</refname>
-
-    <refpurpose>program to do something</refpurpose>
-  </refnamediv>
-  <refsynopsisdiv>
-    <cmdsynopsis>
-      <command>&dhpackage;</command>
-
-      <arg><option>-e <replaceable>this</replaceable></option></arg>
-
-      <arg><option>--example <replaceable>that</replaceable></option></arg>
-    </cmdsynopsis>
-  </refsynopsisdiv>
-  <refsect1>
-    <title>DESCRIPTION</title>
-
-    <para>This manual page documents briefly the
-      <command>&dhpackage;</command> and <command>bar</command>
-      commands.</para>
-
-    <para>This manual page was written for the &debian; distribution
-      because the original program does not have a manual page.
-      Instead, it has documentation in the &gnu;
-      <application>Info</application> format; see below.</para>
-
-    <para><command>&dhpackage;</command> is a program that...</para>
-
-  </refsect1>
-  <refsect1>
-    <title>OPTIONS</title>
-
-    <para>These programs follow the usual &gnu; command line syntax,
-      with long options starting with two dashes (`-').  A summary of
-      options is included below.  For a complete description, see the
-      <application>Info</application> files.</para>
-
-    <variablelist>
-      <varlistentry>
-        <term><option>-h</option>
-          <option>--help</option>
-        </term>
-        <listitem>
-          <para>Show summary of options.</para>
-        </listitem>
-      </varlistentry>
-      <varlistentry>
-        <term><option>-v</option>
-          <option>--version</option>
-        </term>
-        <listitem>
-          <para>Show version of program.</para>
-        </listitem>
-      </varlistentry>
-    </variablelist>
-  </refsect1>
-  <refsect1>
-    <title>SEE ALSO</title>
-
-    <para>bar (1), baz (1).</para>
-
-    <para>The programs are documented fully by <citetitle>The Rise and
-      Fall of a Fooish Bar</citetitle> available via the
-      <application>Info</application> system.</para>
-  </refsect1>
-  <refsect1>
-    <title>AUTHOR</title>
-
-    <para>This manual page was written by &dhusername; &dhemail; for
-      the &debian; system (but may be used by others).  Permission is
-      granted to copy, distribute and/or modify this document under
-      the terms of the &gnu; General Public License, Version 2 any 
-	  later version published by the Free Software Foundation.
-    </para>
-	<para>
-	  On Debian systems, the complete text of the GNU General Public
-	  License can be found in /usr/share/common-licenses/GPL.
-	</para>
-
-  </refsect1>
-</refentry>
-
-<!-- Keep this comment at the end of the file
-Local variables:
-mode: sgml
-sgml-omittag:t
-sgml-shorttag:t
-sgml-minimize-attributes:nil
-sgml-always-quote-attributes:t
-sgml-indent-step:2
-sgml-indent-data:t
-sgml-parent-document:nil
-sgml-default-dtd-file:nil
-sgml-exposed-tags:nil
-sgml-local-catalogs:nil
-sgml-local-ecat-files:nil
-End:
--->
-
-

Deleted: trunk/packages/autodocksuite/trunk/debian/manpage.xml.ex
===================================================================
--- trunk/packages/autodocksuite/trunk/debian/manpage.xml.ex	2007-12-26 22:27:23 UTC (rev 1028)
+++ trunk/packages/autodocksuite/trunk/debian/manpage.xml.ex	2007-12-26 22:59:37 UTC (rev 1029)
@@ -1,144 +0,0 @@
-<?xml version='1.0' encoding='ISO-8859-1'?>
-<!DOCTYPE refentry PUBLIC "-//OASIS//DTD DocBook XML V4.2//EN"
-"http://www.oasis-open.org/docbook/xml/4.2/docbookx.dtd" [
-
-<!--
-
-Process this file with an XSLT processor: `xsltproc \
--''-nonet /usr/share/sgml/docbook/stylesheet/xsl/nwalsh/\
-manpages/docbook.xsl manpage.dbk'.  A manual page
-<package>.<section> will be generated.  You may view the
-manual page with: nroff -man <package>.<section> | less'.  A
-typical entry in a Makefile or Makefile.am is:
-
-DB2MAN=/usr/share/sgml/docbook/stylesheet/xsl/nwalsh/\
-manpages/docbook.xsl
-XP=xsltproc -''-nonet
-
-manpage.1: manpage.dbk
-        $(XP) $(DB2MAN) $<
-    
-The xsltproc binary is found in the xsltproc package.  The
-XSL files are in docbook-xsl.  Please remember that if you
-create the nroff version in one of the debian/rules file
-targets (such as build), you will need to include xsltproc
-and docbook-xsl in your Build-Depends control field.
-
--->
-
-  <!-- Fill in your name for FIRSTNAME and SURNAME. -->
-  <!ENTITY dhfirstname "<firstname>FIRSTNAME</firstname>">
-  <!ENTITY dhsurname   "<surname>SURNAME</surname>">
-  <!-- Please adjust the date whenever revising the manpage. -->
-  <!ENTITY dhdate      "<date>Juli 23, 2007</date>">
-  <!-- SECTION should be 1-8, maybe w/ subsection other parameters are
-       allowed: see man(7), man(1). -->
-  <!ENTITY dhsection   "<manvolnum>SECTION</manvolnum>">
-  <!ENTITY dhemail     "<email>steffen_moeller at gmx.de</email>">
-  <!ENTITY dhusername  "Steffen Moeller">
-  <!ENTITY dhucpackage "<refentrytitle>AUTODOCKSUITE</refentrytitle>">
-  <!ENTITY dhpackage   "autodocksuite">
-
-  <!ENTITY debian      "<productname>Debian</productname>">
-  <!ENTITY gnu         "<acronym>GNU</acronym>">
-  <!ENTITY gpl         "&gnu; <acronym>GPL</acronym>">
-]>
-
-<refentry>
-  <refentryinfo>
-    <address>
-      &dhemail;
-    </address>
-    <copyright>
-      <year>2007</year>
-      <holder>&dhusername;</holder>
-    </copyright>
-    &dhdate;
-  </refentryinfo>
-  <refmeta>
-    &dhucpackage;
-
-    &dhsection;
-  </refmeta>
-  <refnamediv>
-    <refname>&dhpackage;</refname>
-
-    <refpurpose>program to do something</refpurpose>
-  </refnamediv>
-  <refsynopsisdiv>
-    <cmdsynopsis>
-      <command>&dhpackage;</command>
-
-      <arg><option>-e <replaceable>this</replaceable></option></arg>
-
-      <arg><option>--example <replaceable>that</replaceable></option></arg>
-    </cmdsynopsis>
-  </refsynopsisdiv>
-  <refsect1>
-    <title>DESCRIPTION</title>
-
-    <para>This manual page documents briefly the
-      <command>&dhpackage;</command> and <command>bar</command>
-      commands.</para>
-
-    <para>This manual page was written for the &debian; distribution
-      because the original program does not have a manual page.
-      Instead, it has documentation in the &gnu;
-      <application>Info</application> format; see below.</para>
-
-    <para><command>&dhpackage;</command> is a program that...</para>
-
-  </refsect1>
-  <refsect1>
-    <title>OPTIONS</title>
-
-    <para>These programs follow the usual &gnu; command line syntax,
-      with long options starting with two dashes (`-').  A summary of
-      options is included below.  For a complete description, see the
-      <application>Info</application> files.</para>
-
-    <variablelist>
-      <varlistentry>
-        <term><option>-h</option>
-          <option>--help</option>
-        </term>
-        <listitem>
-          <para>Show summary of options.</para>
-        </listitem>
-      </varlistentry>
-      <varlistentry>
-        <term><option>-v</option>
-          <option>--version</option>
-        </term>
-        <listitem>
-          <para>Show version of program.</para>
-        </listitem>
-      </varlistentry>
-    </variablelist>
-  </refsect1>
-  <refsect1>
-    <title>SEE ALSO</title>
-
-    <para>bar (1), baz (1).</para>
-
-    <para>The programs are documented fully by <citetitle>The Rise and
-      Fall of a Fooish Bar</citetitle> available via the
-      <application>Info</application> system.</para>
-  </refsect1>
-  <refsect1>
-    <title>AUTHOR</title>
-
-    <para>This manual page was written by &dhusername; &dhemail; for
-      the &debian; system (but may be used by others).  Permission is
-      granted to copy, distribute and/or modify this document under
-      the terms of the &gnu; General Public License, Version 2 any 
-	  later version published by the Free Software Foundation.
-    </para>
-	<para>
-	  On Debian systems, the complete text of the GNU General Public
-	  License can be found in /usr/share/common-licenses/GPL.
-	</para>
-
-  </refsect1>
-</refentry>
-

Modified: trunk/packages/autodocksuite/trunk/debian/rules
===================================================================
--- trunk/packages/autodocksuite/trunk/debian/rules	2007-12-26 22:27:23 UTC (rev 1028)
+++ trunk/packages/autodocksuite/trunk/debian/rules	2007-12-26 22:59:37 UTC (rev 1029)
@@ -31,7 +31,7 @@
 	dh_testdir
 	# Add here commands to configure the package.
 	for d in autodock autogrid; do \
-	   (cd src/$$d && ./configure CFLAGS="$(CFLAGS) --prefix=/usr") ; \
+	   (cd src/$$d && ./configure CFLAGS="$(CFLAGS)" --prefix=/usr) ; \
 	done
 
 	touch configure-stamp
@@ -55,7 +55,7 @@
 clean:
 	dh_testdir
 	dh_testroot
-	rm -f build-arch-stamp build-indep-stamp #CONFIGURE-STAMP#
+	rm -f build-arch-stamp build-indep-stamp configure-stamp
 
 	# Add here commands to clean up after the build process.
 	for d in src/autodock src/autogrid; \
@@ -66,17 +66,18 @@
 
 install: install-indep install-arch
 install-indep:
-	dh_testdir
-	dh_testroot
-	dh_clean -k -i 
-	dh_installdirs -i
+#	Nothing to do
+#	dh_testdir
+#	dh_testroot
+#	dh_clean -k -i 
+#	dh_installdirs -i
+#
+#	# Add here commands to install the indep part of the package into
+#	# debian/<package>-doc.
+#	#INSTALLDOC#
+#
+#	dh_install -i
 
-	# Add here commands to install the indep part of the package into
-	# debian/<package>-doc.
-	#INSTALLDOC#
-
-	dh_install -i
-
 install-arch:
 	dh_testdir
 	dh_testroot
@@ -88,7 +89,16 @@
 	#$(MAKE) -C $$d DESTDIR=$(CURDIR)/debian/autodocksuite install
 	for d in autodock autogrid; do \
 		$(MAKE) -C src/$$d DESTDIR=$(CURDIR)/debian/$$d install; \
+		cp -r src/$$d/{AUTHORS,README,NEWS,Tests} $(CURDIR)/debian/$$d/usr/share/doc/$$d ; \
 	done
+
+	-rmdir $(CURDIR)/debian/autodock/usr/share/doc/autodock/Tests/AutoDockTools
+
+	# empty changelog in autogrid
+	for d in autodock; do \
+		cat src/$$d/ChangeLog | gzip -c9 > $(CURDIR)/debian/$$d/usr/share/doc/$$d/changelog.gz ; \
+	done
+
 	dh_install -s
 
 # Must not depend on anything. This is to be called by
@@ -100,26 +110,21 @@
 	dh_installchangelogs 
 	dh_installdocs
 	dh_installexamples
-#	dh_installmenu
-#	dh_installdebconf	
-#	dh_installlogrotate	
-#	dh_python
-#	dh_installinfo
 	dh_installman
 	dh_link
 	dh_strip
 	dh_compress 
 	dh_fixperms
-#	dh_perl
 	dh_makeshlibs
 	dh_installdeb
 	dh_shlibdeps
 	dh_gencontrol
 	dh_md5sums
 	dh_builddeb
+
 # Build architecture independant packages using the common target.
-binary-indep: build-indep install-indep
-	$(MAKE) -f debian/rules DH_OPTIONS=-i binary-common
+#binary-indep: build-indep install-indep
+#	$(MAKE) -f debian/rules DH_OPTIONS=-i binary-common
 
 # Build architecture dependant packages using the common target.
 binary-arch: build-arch install-arch




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