[med-svn] r336 - trunk/packages/bioperl/trunk

[charles-guest at alioth.debian.org]

Author: charles-guest
Date: 2007-06-16 04:36:40 +0000 (Sat, 16 Jun 2007)
New Revision: 336

Removed:
   trunk/packages/bioperl/trunk/test.swiss
Log:
many other packages provide sequences usable for tests

Deleted: trunk/packages/bioperl/trunk/test.swiss
===================================================================
--- trunk/packages/bioperl/trunk/test.swiss	2007-06-16 04:33:56 UTC (rev 335)
+++ trunk/packages/bioperl/trunk/test.swiss	2007-06-16 04:36:40 UTC (rev 336)
@@ -1,57 +0,0 @@
-ID   GCDH_CAEEL     STANDARD;      PRT;   409 AA.
-AC   Q20772;
-DT   01-NOV-1997 (Rel. 35, Created)
-DT   01-NOV-1997 (Rel. 35, Last sequence update)
-DT   16-OCT-2001 (Rel. 40, Last annotation update)
-DE   PROBABLE GLUTARYL-COA DEHYDROGENASE, MITOCHONDRIAL PRECURSOR (EC 1.3.99.7) 
-DE   (GCD).
-GN   F54D5.7.
-OS   Caenorhabditis elegans.
-OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; 
-OC   Rhabditidae; Peloderinae; Caenorhabditis.
-OX   NCBI_TaxID=6239;
-RN   [1]
-RP   SEQUENCE FROM N.A.
-RC   STRAIN=BRISTOL N2;
-RA   Coles L.;
-RT   
-RL   Submitted (OCT-1995) to the EMBL/GenBank/DDBJ databases.
-CC   -!- CATALYTIC ACTIVITY: GLUTARYL-COA + ACCEPTOR = CROTONOYL-COA +
-CC       CO(2) + REDUCED ACCEPTOR.
-CC   -!- COFACTOR: FAD (BY SIMILARITY).
-CC   -!- PATHWAY: DEGRADATIVE PATHWAY OF L-LYSINE, L-HYDROXYLYSINE,
-CC       AND L-TRYPTOPHAN METABOLISM.
-CC   -!- SUBCELLULAR LOCATION: MITOCHONDRIAL MATRIX (POTENTIAL).
-CC   -!- SIMILARITY: BELONGS TO THE ACYL-COA DEHYDROGENASES FAMILY.
-CC   --------------------------------------------------------------------------
-CC   This SWISS-PROT entry is copyright. It is produced through a collaboration
-CC   between  the Swiss Institute of Bioinformatics  and the  EMBL outstation -
-CC   the European Bioinformatics Institute.  There are no  restrictions on  its
-CC   use  by  non-profit  institutions as long  as its content  is  in  no  way
-CC   modified and this statement is not removed.  Usage  by  and for commercial
-CC   entities requires a license agreement (See http://www.isb-sib.ch/announce/
-CC   or send an email to license at isb-sib.ch).
-CC   --------------------------------------------------------------------------
-DR   EMBL; Z66513; CAA91333.1; -.
-DR   HSSP; Q06319; 1BUC.
-DR   WormPep; F54D5.7; CE03411.
-DR   InterPro; IPR001552; Acyl-CoA_dh.
-DR   Pfam; PF00441; Acyl-CoA_dh; 1.
-DR   Pfam; PF02770; Acyl-CoA_dh_M; 1.
-DR   Pfam; PF02771; Acyl-CoA_dh_N; 1.
-DR   PROSITE; PS00072; ACYL_COA_DH_1; FALSE_NEG.
-DR   PROSITE; PS00073; ACYL_COA_DH_2; 1.
-KW   Hypothetical protein; Oxidoreductase; Flavoprotein; FAD; Mitochondrion; 
-KW   Transit peptide.
-FT   TRANSIT       1      ?       MITOCHONDRION (POTENTIAL)..
-FT   CHAIN         ?    409       PROBABLE GLUTARYL-COA DEHYDROGENASE..
-FT   ACT_SITE    388    388       BASE (POTENTIAL)..
-SQ   SEQUENCE   409 AA;  44965 MW;  4D06241FB6768069 CRC64;
-     MLTRGFTSIG KIASRGLSST FYQDAFQLSD QLTEDERSLM LSAREYCQER LLPRVTEAYR 
-     TEKFDPSLIP EMGSMGLLGA PYQGYGCAGT STVGYGLIAR EVERVDSGYR STMSVQTSLV 
-     IGPIYNYGSE DQKQKYIPDL ASGKKIGCFG LTEPNHGSNP GGMETKATWD ETTKTYKLNG 
-     SKTWISNSPV SDVMVVWARS ARHNNKIKGF ILERGMKGLT TPKIEGKLSL RASITGQIAM 
-     DDVPVPEENL LPNAEGLQGP FGCLNNARLG IAWGALGAAE ECFHLARQYT LDRQQFGRPL 
-     AQNQLMQLKM ADMLTEISLG LQGCLRVSRL KDEGKVQSEQ ISIIKRNSCG KALEVARKAR 
-     DMLGGNGIVD EYHIMRHMVN LETVNTYEGT HDVHALILGR AITGLNGFC 
-//