[med-svn] r344 - trunk/packages/gbrowse/trunk/debian/patches

[charles-guest at alioth.debian.org]

Author: charles-guest
Date: 2007-06-26 03:59:45 +0000 (Tue, 26 Jun 2007)
New Revision: 344

Added:
   trunk/packages/gbrowse/trunk/debian/patches/blast2gff_1.69-and-usrbin.patch
Removed:
   trunk/packages/gbrowse/trunk/debian/patches/10_usrlocalperl.patch
Modified:
   trunk/packages/gbrowse/trunk/debian/patches/series
Log:
fixes a bug in blast2gff.pl

Deleted: trunk/packages/gbrowse/trunk/debian/patches/10_usrlocalperl.patch
===================================================================
--- trunk/packages/gbrowse/trunk/debian/patches/10_usrlocalperl.patch	2007-06-24 12:40:30 UTC (rev 343)
+++ trunk/packages/gbrowse/trunk/debian/patches/10_usrlocalperl.patch	2007-06-26 03:59:45 UTC (rev 344)
@@ -1,10 +0,0 @@
-Index: gbrowse-1.68/contrib/blast2gff.pl
-===================================================================
---- gbrowse-1.68.orig/contrib/blast2gff.pl	2007-06-14 22:47:19.000000000 +0900
-+++ gbrowse-1.68/contrib/blast2gff.pl	2007-06-14 22:47:37.000000000 +0900
-@@ -1,4 +1,4 @@
--#!/usr/local/bin/perl -w
-+#!/usr/bin/perl -w
- 
- =head1 NAME
- 

Added: trunk/packages/gbrowse/trunk/debian/patches/blast2gff_1.69-and-usrbin.patch
===================================================================
--- trunk/packages/gbrowse/trunk/debian/patches/blast2gff_1.69-and-usrbin.patch	                        (rev 0)
+++ trunk/packages/gbrowse/trunk/debian/patches/blast2gff_1.69-and-usrbin.patch	2007-06-26 03:59:45 UTC (rev 344)
@@ -0,0 +1,19 @@
+Index: gbrowse-1.68/contrib/blast2gff.pl
+===================================================================
+--- gbrowse-1.68.orig/contrib/blast2gff.pl	2007-06-26 11:59:12.000000000 +0900
++++ gbrowse-1.68/contrib/blast2gff.pl	2007-06-26 11:59:55.000000000 +0900
+@@ -1,4 +1,4 @@
+-#!/usr/local/bin/perl -w
++#!/usr/bin/perl -w
+ 
+ =head1 NAME
+ 
+@@ -271,7 +271,7 @@
+ 		    replace_undef($hsp->query->end);
+ 	    }
+ 	    else {
+-		$hsp_col9_class_name = upper_case_first_letter(replace_undef($default_hsp_col3_feature_type))." ".
++		$hsp_col9_class_name = upper_case_first_letter(replace_undef($default_match_col3_feature_type))." ".
+ 		    replace_undef($result->query_name);
+ 	    }
+ 

Modified: trunk/packages/gbrowse/trunk/debian/patches/series
===================================================================
--- trunk/packages/gbrowse/trunk/debian/patches/series	2007-06-24 12:40:30 UTC (rev 343)
+++ trunk/packages/gbrowse/trunk/debian/patches/series	2007-06-26 03:59:45 UTC (rev 344)
@@ -1 +1 @@
-10_usrlocalperl.patch
+blast2gff_1.69-and-usrbin.patch