[med-svn] r287 - in emboss-explorer/trunk: . debian

David Paleino hanska-guest at alioth.debian.org
Sat May 12 19:53:02 UTC 2007


Author: hanska-guest
Date: 2007-05-12 19:53:01 +0000 (Sat, 12 May 2007)
New Revision: 287

Added:
   emboss-explorer/trunk/debian/
   emboss-explorer/trunk/debian/README.Debian
   emboss-explorer/trunk/debian/README.Debian-source
   emboss-explorer/trunk/debian/acdcheck.xml
   emboss-explorer/trunk/debian/changelog
   emboss-explorer/trunk/debian/compat
   emboss-explorer/trunk/debian/control
   emboss-explorer/trunk/debian/copyright
   emboss-explorer/trunk/debian/dirs
   emboss-explorer/trunk/debian/docs
   emboss-explorer/trunk/debian/emboss-explorer.links
   emboss-explorer/trunk/debian/install-script
   emboss-explorer/trunk/debian/manpages
   emboss-explorer/trunk/debian/mkstatic.xml
   emboss-explorer/trunk/debian/rules
   emboss-explorer/trunk/debian/watch
Log:
[svn-inject] Applying Debian modifications to trunk


Property changes on: emboss-explorer/trunk/debian
___________________________________________________________________
Name: mergeWithUpstream
   + 1

Added: emboss-explorer/trunk/debian/README.Debian
===================================================================
--- emboss-explorer/trunk/debian/README.Debian	2007-05-12 19:51:03 UTC (rev 286)
+++ emboss-explorer/trunk/debian/README.Debian	2007-05-12 19:53:01 UTC (rev 287)
@@ -0,0 +1,26 @@
+emboss-explorer for Debian
+--------------------------
+
+Visit http://localhost/cgi-bin/emboss to test EMBOSS.
+Site configuration (including a list of applications to be excluded from
+public access) is stored in the EMBOSS::GUI::Conf module (located at
+/usr/share/perl5/EMBOSS/GUI/Conf.pm).
+
+The main style sheet, which can be edited to customize the appearance of
+EMBOSS Explorer is /var/www/emboss/style/emboss.css.  If you prefer the look and
+feel of the old EMBOSS GUI, you can use /var/www/emboss/style/classic.css
+instead (the style sheet is specified in the EMBOSS::GUI::Conf module).
+
+EMBOSS Explorer generates temporary output files every time an application is
+used.  Depending on the tasks being performed, these output files can consume
+space fairly quickly.  The old output can be cleaned up on a regular basis by
+adding a task to the root user's crontab.  The following example runs every
+morning at 0400 and removes all output files that have not been accessed in
+the last 24 hours:
+
+0 4 * * * find /var/www/emboss/output -type d -mindepth 1 -maxdepth 1 -atime 1 -exec rm -rf {} \;
+
+Please report any errors or strange occurrences using the bug tracker at
+http://sourceforge.net/tracker/?func=add&group_id=124389&atid=699414
+
+ -- David Paleino <d.paleino at gmail.com>  Sat, 12 May 2007 17:52:59 +0200

Added: emboss-explorer/trunk/debian/README.Debian-source
===================================================================
--- emboss-explorer/trunk/debian/README.Debian-source	2007-05-12 19:51:03 UTC (rev 286)
+++ emboss-explorer/trunk/debian/README.Debian-source	2007-05-12 19:53:01 UTC (rev 287)
@@ -0,0 +1,7 @@
+emboss-explorer for Debian
+--------------------------
+
+The source has been repackaged because upstream archive contains a 
+"emboss-explorer" directory instead of "emboss-explorer-x.x.x".
+
+ -- David Paleino <d.paleino at gmail.com>  Sat, 12 May 2007 17:52:59 +0200

Added: emboss-explorer/trunk/debian/acdcheck.xml
===================================================================
--- emboss-explorer/trunk/debian/acdcheck.xml	2007-05-12 19:51:03 UTC (rev 286)
+++ emboss-explorer/trunk/debian/acdcheck.xml	2007-05-12 19:53:01 UTC (rev 287)
@@ -0,0 +1,125 @@
+<?xml version='1.0' encoding='ISO-8859-1'?>
+<!DOCTYPE refentry PUBLIC "-//OASIS//DTD DocBook XML V4.2//EN"
+"http://www.oasis-open.org/docbook/xml/4.2/docbookx.dtd" [
+
+<!--
+
+Process this file with an XSLT processor: `xsltproc \
+-''-nonet /usr/share/sgml/docbook/stylesheet/xsl/nwalsh/\
+manpages/docbook.xsl manpage.dbk'.  A manual page
+<package>.<section> will be generated.  You may view the
+manual page with: nroff -man <package>.<section> | less'.  A
+typical entry in a Makefile or Makefile.am is:
+
+DB2MAN=/usr/share/sgml/docbook/stylesheet/xsl/nwalsh/\
+manpages/docbook.xsl
+XP=xsltproc -''-nonet
+
+manpage.1: manpage.dbk
+        $(XP) $(DB2MAN) $<
+    
+The xsltproc binary is found in the xsltproc package.  The
+XSL files are in docbook-xsl.  Please remember that if you
+create the nroff version in one of the debian/rules file
+targets (such as build), you will need to include xsltproc
+and docbook-xsl in your Build-Depends control field.
+
+-->
+
+  <!-- Fill in your name for FIRSTNAME and SURNAME. -->
+  <!ENTITY dhfirstname "<firstname>David</firstname>">
+  <!ENTITY dhsurname   "<surname>Paleino</surname>">
+  <!-- Please adjust the date whenever revising the manpage. -->
+  <!ENTITY dhdate      "<date>may 12, 2007</date>">
+  <!-- SECTION should be 1-8, maybe w/ subsection other parameters are
+       allowed: see man(7), man(1). -->
+  <!ENTITY dhsection   "<manvolnum>1</manvolnum>">
+  <!ENTITY dhemail     "<email>d.paleino at gmail.com</email>">
+  <!ENTITY dhusername  "David Paleino">
+  <!ENTITY dhucpackage "<refentrytitle>acdcheck</refentrytitle>">
+  <!ENTITY dhpackage   "acdcheck">
+
+  <!ENTITY debian      "<productname>Debian</productname>">
+  <!ENTITY gnu         "<acronym>GNU</acronym>">
+  <!ENTITY gpl         "&gnu; <acronym>GPL</acronym>">
+]>
+
+<refentry>
+  <refentryinfo>
+    <address>
+      &dhemail;
+    </address>
+    <copyright>
+      <year>2007</year>
+      <holder>&dhusername;</holder>
+    </copyright>
+    &dhdate;
+  </refentryinfo>
+  <refmeta>
+    &dhucpackage;
+
+    &dhsection;
+  </refmeta>
+  <refnamediv>
+    <refname>&dhpackage;</refname>
+
+    <refpurpose>parse EMBOSS ACD files</refpurpose>
+  </refnamediv>
+  <refsynopsisdiv>
+    <cmdsynopsis>
+      <command>&dhpackage;</command>
+
+      <arg><option>--output <replaceable>FORMAT</replaceable></option></arg>
+
+      <arg><option>FILE <replaceable>[ FILE ... ]</replaceable></option></arg>
+    </cmdsynopsis>
+  </refsynopsisdiv>
+  <refsect1>
+    <title>DESCRIPTION</title>
+
+    <para>This manual page documents briefly the
+      <command>&dhpackage;</command> command.</para>
+
+    <para><command>&dhpackage;</command> reads one or more named
+    input FILEs and attempts to parse them as if they were
+    EMBOSS ACD (AJAX Command Definition) files.</para>
+
+  </refsect1>
+  <refsect1>
+    <title>OPTIONS</title>
+
+    <variablelist>
+      <varlistentry>
+        <term><option>--output <replaceable>FORMAT</replaceable></option></term>
+        <listitem>
+          <para>
+          upon successful parsing of each ACD file, print a representation of the 
+          parse tree to standard output in the specified format. FORMAT must be
+          one of either 'XML' or 'Perl' (case-insensitive and without the quotes).
+          </para>
+        </listitem>
+      </varlistentry>
+    </variablelist>
+  </refsect1>
+  <refsect1>
+    <title>AUTHOR</title>
+
+    <para>This manual page was written by &dhusername; &dhemail; for
+      the &debian; system (but may be used by others).  Permission is
+      granted to copy, distribute and/or modify this document under
+      the terms of the &gnu; General Public License, Version 2 any 
+	  later version published by the Free Software Foundation.
+    </para>
+	<para>
+	  On Debian systems, the complete text of the GNU General Public
+	  License can be found in /usr/share/common-licenses/GPL.
+	</para>
+	<para>
+		emboss-explorer, to which &dhpackage; belongs to, is
+		(C) 2004, Luke McCarthy &lt;mccarthy at users.sourceforge.net&gt;
+		
+		emboss-explorer is released under the Artistic license, which
+		can be found, on Debian systems, in /usr/share/common-licenses/Artistic.
+	</para>
+  </refsect1>
+</refentry>

Added: emboss-explorer/trunk/debian/changelog
===================================================================
--- emboss-explorer/trunk/debian/changelog	2007-05-12 19:51:03 UTC (rev 286)
+++ emboss-explorer/trunk/debian/changelog	2007-05-12 19:53:01 UTC (rev 287)
@@ -0,0 +1,6 @@
+emboss-explorer (2.2.0-1) unstable; urgency=low
+
+  * Initial release (Closes: #423548)
+
+ -- David Paleino <d.paleino at gmail.com>  Sat, 12 May 2007 17:52:59 +0200
+

Added: emboss-explorer/trunk/debian/compat
===================================================================
--- emboss-explorer/trunk/debian/compat	2007-05-12 19:51:03 UTC (rev 286)
+++ emboss-explorer/trunk/debian/compat	2007-05-12 19:53:01 UTC (rev 287)
@@ -0,0 +1 @@
+5

Added: emboss-explorer/trunk/debian/control
===================================================================
--- emboss-explorer/trunk/debian/control	2007-05-12 19:51:03 UTC (rev 286)
+++ emboss-explorer/trunk/debian/control	2007-05-12 19:53:01 UTC (rev 287)
@@ -0,0 +1,20 @@
+Source: emboss-explorer
+Section: science
+Priority: optional
+Maintainer: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: David Paleino <d.paleino at gmail.com>
+Build-Depends: debhelper (>= 5), perl (>= 5.6.0-16), xsltproc, docbook-xsl, docbook-xml
+Standards-Version: 3.7.2
+XS-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/emboss-explorer/trunk/
+XS-Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/emboss-explorer
+
+Package: emboss-explorer
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}, ${perl:Depends}, libparse-recdescent-perl, libmailtools-perl
+Recommends: emboss, emboss-data, emboss-doc
+Description: web-based GUI to EMBOSS
+ EMBOSS explorer is a web-based graphical user interface
+ to the EMBOSS suite of bioinformatics tools. It is written
+ in Perl.
+ .
+  Homepage: http://embossgui.sourceforge.net/

Added: emboss-explorer/trunk/debian/copyright
===================================================================
--- emboss-explorer/trunk/debian/copyright	2007-05-12 19:51:03 UTC (rev 286)
+++ emboss-explorer/trunk/debian/copyright	2007-05-12 19:53:01 UTC (rev 287)
@@ -0,0 +1,27 @@
+This package was debianized by David Paleino <d.paleino at gmail.com> on
+Sat, 12 May 2007 17:52:59 +0200.
+
+It was downloaded from http://embossgui.sourceforge.net/
+
+Upstream Author: 
+
+    Luke McCarthy <mccarthy at users.sourceforge.net>
+
+Copyright: 
+
+    (C) 2004 Luke McCarthy
+
+License:
+
+    This program is free software; you can redistribute it and/or modify it
+    under the terms of the "Artistic License" which comes with Debian.
+
+    THIS PACKAGE IS PROVIDED "AS IS" AND WITHOUT ANY EXPRESS OR IMPLIED 
+    WARRANTIES, INCLUDING, WITHOUT LIMITATION, THE IMPLIED WARRANTIES 
+    OF MERCHANTIBILITY AND FITNESS FOR A PARTICULAR PURPOSE.
+
+On Debian systems, the complete text of the Artistic License 
+can be found in `/usr/share/common-licenses/Artistic'.
+
+The Debian packaging is (C) 2007, David Paleino <d.paleino at gmail.com> and
+is licensed under the GPL, see `/usr/share/common-licenses/GPL'.

Added: emboss-explorer/trunk/debian/dirs
===================================================================
--- emboss-explorer/trunk/debian/dirs	2007-05-12 19:51:03 UTC (rev 286)
+++ emboss-explorer/trunk/debian/dirs	2007-05-12 19:53:01 UTC (rev 287)
@@ -0,0 +1,5 @@
+usr/bin
+var/www/emboss/images
+var/www/emboss/output
+var/www/emboss/style
+var/www/cgi-bin

Added: emboss-explorer/trunk/debian/docs
===================================================================
--- emboss-explorer/trunk/debian/docs	2007-05-12 19:51:03 UTC (rev 286)
+++ emboss-explorer/trunk/debian/docs	2007-05-12 19:53:01 UTC (rev 287)
@@ -0,0 +1 @@
+README

Added: emboss-explorer/trunk/debian/emboss-explorer.links
===================================================================
--- emboss-explorer/trunk/debian/emboss-explorer.links	2007-05-12 19:51:03 UTC (rev 286)
+++ emboss-explorer/trunk/debian/emboss-explorer.links	2007-05-12 19:53:01 UTC (rev 287)
@@ -0,0 +1 @@
+usr/share/EMBOSS/doc/html/emboss/apps/ var/www/emboss/manual

Added: emboss-explorer/trunk/debian/install-script
===================================================================
--- emboss-explorer/trunk/debian/install-script	2007-05-12 19:51:03 UTC (rev 286)
+++ emboss-explorer/trunk/debian/install-script	2007-05-12 19:53:01 UTC (rev 287)
@@ -0,0 +1,43 @@
+#!/bin/sh
+BUILD_DIR=./debian/emboss-explorer
+
+EMBOSS_PREFIX=/usr
+HTML_PATH=/var/www/emboss
+OUTPUT_PATH=$HTML_PATH/output
+HTML_URL=/emboss
+OUTPUT_URL=$HTML_URL/output
+CGI_PATH=/var/www/cgi-bin/emboss
+
+if [ -d $CGI_PATH ]
+then
+	CGI_DIR=$CGI_PATH
+	CGI_PATH=$CGI_DIR/emboss
+else
+	CGI_DIR=${CGI_PATH%/*}
+fi
+
+CGI_URL=/cgi-bin/emboss
+
+# munge EMBOSS::GUI::Conf according to the information above...
+#CONF_MODULE=`perl -MEMBOSS::GUI::Conf -e 'print $INC{"EMBOSS/GUI/Conf.pm"}'`
+CONF_MODULE=$BUILD_DIR/usr/share/perl5/EMBOSS/GUI/Conf.pm
+perl -pi -e "
+	\$HTML_PATH = '$HTML_PATH'; s/(?<=HTML_PATH = \")[^\"]*/\$HTML_PATH/;
+	\$HTML_URL='$HTML_URL'; s/(?<=HTML_URL = \")[^\"]*/\$HTML_URL/;
+	\$OUTPUT_PATH = '$OUTPUT_PATH'; s/(?<=OUTPUT_PATH = \")[^\"]*/\$OUTPUT_PATH/;
+	\$OUTPUT_URL='$OUTPUT_URL'; s/(?<=OUTPUT_URL = \")[^\"]*/\$OUTPUT_URL/;
+	\$EMBOSS_PREFIX='$EMBOSS_PREFIX'; s/(?<=EMBOSS_PREFIX = \")[^\"]*/\$EMBOSS_PREFIX/;
+" $CONF_MODULE
+
+echo creating HTML index file at $HTML_PATH/index.html...
+echo "<!DOCTYPE html PUBLIC \"-//W3C//DTD XHTML 1.0 Frameset//EN\"
+ \"http://www.w3.org/TR/xhtml1/DTD/xhtml1-frameset.dtd\">
+<html xmlns='http://www.w3.org/1999/xhtml' xml:lang='en' lang='en'>
+  <head>
+    <title>EMBOSS Explorer</title>
+  </head>
+  <frameset cols=\"170, *\">
+    <frame src=\"$CGI_URL/menu\" name=\"menu\" />
+    <frame src=\"$CGI_URL/intro\" name=\"main\" />
+  </frameset>
+</html>" >$BUILD_DIR$HTML_PATH/index.html

Added: emboss-explorer/trunk/debian/manpages
===================================================================
--- emboss-explorer/trunk/debian/manpages	2007-05-12 19:51:03 UTC (rev 286)
+++ emboss-explorer/trunk/debian/manpages	2007-05-12 19:53:01 UTC (rev 287)
@@ -0,0 +1,6 @@
+blib/man3/EMBOSS::GUI::Conf.3pm
+blib/man3/EMBOSS::ACD.3pm
+blib/man3/EMBOSS::GUI.3pm
+blib/man3/EMBOSS::GUI::XHTML.3pm
+acdcheck.1
+mkstatic.1

Added: emboss-explorer/trunk/debian/mkstatic.xml
===================================================================
--- emboss-explorer/trunk/debian/mkstatic.xml	2007-05-12 19:51:03 UTC (rev 286)
+++ emboss-explorer/trunk/debian/mkstatic.xml	2007-05-12 19:53:01 UTC (rev 287)
@@ -0,0 +1,130 @@
+<?xml version='1.0' encoding='ISO-8859-1'?>
+<!DOCTYPE refentry PUBLIC "-//OASIS//DTD DocBook XML V4.2//EN"
+"http://www.oasis-open.org/docbook/xml/4.2/docbookx.dtd" [
+
+<!--
+
+Process this file with an XSLT processor: `xsltproc \
+-''-nonet /usr/share/sgml/docbook/stylesheet/xsl/nwalsh/\
+manpages/docbook.xsl manpage.dbk'.  A manual page
+<package>.<section> will be generated.  You may view the
+manual page with: nroff -man <package>.<section> | less'.  A
+typical entry in a Makefile or Makefile.am is:
+
+DB2MAN=/usr/share/sgml/docbook/stylesheet/xsl/nwalsh/\
+manpages/docbook.xsl
+XP=xsltproc -''-nonet
+
+manpage.1: manpage.dbk
+        $(XP) $(DB2MAN) $<
+    
+The xsltproc binary is found in the xsltproc package.  The
+XSL files are in docbook-xsl.  Please remember that if you
+create the nroff version in one of the debian/rules file
+targets (such as build), you will need to include xsltproc
+and docbook-xsl in your Build-Depends control field.
+
+-->
+
+  <!-- Fill in your name for FIRSTNAME and SURNAME. -->
+  <!ENTITY dhfirstname "<firstname>David</firstname>">
+  <!ENTITY dhsurname   "<surname>Paleino</surname>">
+  <!-- Please adjust the date whenever revising the manpage. -->
+  <!ENTITY dhdate      "<date>may 12, 2007</date>">
+  <!-- SECTION should be 1-8, maybe w/ subsection other parameters are
+       allowed: see man(7), man(1). -->
+  <!ENTITY dhsection   "<manvolnum>1</manvolnum>">
+  <!ENTITY dhemail     "<email>d.paleino at gmail.com</email>">
+  <!ENTITY dhusername  "David Paleino">
+  <!ENTITY dhucpackage "<refentrytitle>mkstatic</refentrytitle>">
+  <!ENTITY dhpackage   "mkstatic">
+
+  <!ENTITY debian      "<productname>Debian</productname>">
+  <!ENTITY gnu         "<acronym>GNU</acronym>">
+  <!ENTITY gpl         "&gnu; <acronym>GPL</acronym>">
+]>
+
+<refentry>
+  <refentryinfo>
+    <address>
+      &dhemail;
+    </address>
+    <copyright>
+      <year>2007</year>
+      <holder>&dhusername;</holder>
+    </copyright>
+    &dhdate;
+  </refentryinfo>
+  <refmeta>
+    &dhucpackage;
+
+    &dhsection;
+  </refmeta>
+  <refnamediv>
+    <refname>&dhpackage;</refname>
+
+    <refpurpose>print static EMBOSS-Explorer pages</refpurpose>
+  </refnamediv>
+  <refsynopsisdiv>
+    <cmdsynopsis>
+      <command>&dhpackage;</command>
+
+      <arg><option>--frames | --noframes</option></arg>
+      <arg><option>--cgi <replaceable>URL</replaceable></option></arg>
+      <arg><option><replaceable>DIRECTORY</replaceable></option></arg>
+
+    </cmdsynopsis>
+  </refsynopsisdiv>
+  <refsect1>
+    <title>DESCRIPTION</title>
+
+    <para>This manual page documents briefly the
+      <command>&dhpackage;</command> command.</para>
+
+    <para><command>&dhpackage;</command> prints EMBOSS-Explorer pages in
+    a static way, so that you don't need to run any cgi script.</para>
+
+  </refsect1>
+  <refsect1>
+    <title>OPTIONS</title>
+
+    <variablelist>
+      <varlistentry>
+        <term><option>--frames | --noframes</option></term> 
+        <listitem>
+          <para>
+          controls whether or not the generated HTML has a separate frame for the
+          application menu. The default is to use a separate frame.</para>
+        </listitem>
+      </varlistentry>
+      <varlistentry>
+        <term><option>--cgi <replaceable>URL</replaceable></option></term>
+        <listitem>
+          <para>use the specified URL as the location of the CGI script that
+          application input forms are submitted to.</para>
+        </listitem>
+      </varlistentry>
+    </variablelist>
+  </refsect1>
+  <refsect1>
+    <title>AUTHOR</title>
+
+    <para>This manual page was written by &dhusername; &dhemail; for
+      the &debian; system (but may be used by others).  Permission is
+      granted to copy, distribute and/or modify this document under
+      the terms of the &gnu; General Public License, Version 2 any 
+	  later version published by the Free Software Foundation.
+    </para>
+	<para>
+	  On Debian systems, the complete text of the GNU General Public
+	  License can be found in /usr/share/common-licenses/GPL.
+	</para>
+	<para>
+		emboss-explorer, to which &dhpackage; belongs to, is
+		(C) 2004, Luke McCarthy &lt;mccarthy at users.sourceforge.net&gt;
+		
+		emboss-explorer is released under the Artistic license, which
+		can be found, on Debian systems, in /usr/share/common-licenses/Artistic.
+	</para>
+  </refsect1>
+</refentry>

Added: emboss-explorer/trunk/debian/rules
===================================================================
--- emboss-explorer/trunk/debian/rules	2007-05-12 19:51:03 UTC (rev 286)
+++ emboss-explorer/trunk/debian/rules	2007-05-12 19:53:01 UTC (rev 287)
@@ -0,0 +1,77 @@
+#!/usr/bin/make -f
+# -*- makefile -*-
+
+# Uncomment this to turn on verbose mode.
+#export DH_VERBOSE=1
+
+CFLAGS = -Wall -g
+
+ifneq (,$(findstring noopt,$(DEB_BUILD_OPTIONS)))
+	CFLAGS += -O0
+else
+	CFLAGS += -O2
+endif
+
+build:
+	perl Makefile.PL INSTALLDIRS=vendor
+	$(MAKE) OPTIMIZE="-O2 -g -Wall"
+	xsltproc -''-nonet /usr/share/sgml/docbook/stylesheet/xsl/nwalsh/manpages/docbook.xsl debian/acdcheck.xml
+	xsltproc -''-nonet /usr/share/sgml/docbook/stylesheet/xsl/nwalsh/manpages/docbook.xsl debian/mkstatic.xml
+
+clean:
+	dh_testdir
+	dh_testroot
+
+	# Add here commands to clean up after the build process.
+	-$(MAKE) clean
+	
+	dh_clean Makefile.old acdcheck.1 mkstatic.1
+
+install: build
+	dh_testdir
+	dh_testroot
+	dh_clean -k 
+	dh_installdirs
+
+	# Let's regenerate the Makefile with the correct DESTDIR
+	$(MAKE) install PREFIX=$(CURDIR)/debian/emboss-explorer/usr
+	#DESTDIR=$(CURDIR)/debian/emboss-explorer perl Makefile.PL
+	#$(MAKE) install
+	-install -m 644 html/* $(CURDIR)/debian/emboss-explorer/var/www/emboss/
+	install -m 644 html/images/* $(CURDIR)/debian/emboss-explorer/var/www/emboss/images/
+	install -m 644 html/style/* $(CURDIR)/debian/emboss-explorer/var/www/emboss/style/
+	install -m 755 cgi/emboss $(CURDIR)/debian/emboss-explorer/var/www/cgi-bin/emboss
+	install -m 755 bin/* $(CURDIR)/debian/emboss-explorer/usr/bin
+
+	# fixing permissions
+	chmod a+rwx $(CURDIR)/debian/emboss-explorer/var/www/emboss/output/
+
+	# some additional fixing is done in debian/install-script
+	chmod a+x debian/install-script
+	debian/install-script
+
+
+# Build architecture-independent files here.
+binary-indep:
+# We have nothing to do by default.
+
+# Build architecture-dependent files here.
+binary-arch: build install
+	dh_testdir
+	dh_testroot
+	dh_installchangelogs 
+	dh_installdocs
+	dh_installman
+	dh_link
+	dh_strip
+	dh_compress
+	dh_fixperms
+	dh_perl
+	dh_installdeb
+	dh_shlibdeps
+	dh_gencontrol
+	dh_md5sums
+	dh_builddeb
+
+binary: binary-indep binary-arch
+.PHONY: build clean binary-indep binary-arch binary install


Property changes on: emboss-explorer/trunk/debian/rules
___________________________________________________________________
Name: svn:executable
   + *

Added: emboss-explorer/trunk/debian/watch
===================================================================
--- emboss-explorer/trunk/debian/watch	2007-05-12 19:51:03 UTC (rev 286)
+++ emboss-explorer/trunk/debian/watch	2007-05-12 19:53:01 UTC (rev 287)
@@ -0,0 +1,4 @@
+version=3
+http://sf.net/embossgui/emboss-explorer-(.*)\.tar\.gz
+
+




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