[med-svn] r806 - trunk/packages/dialign-t/trunk/debian

[charles-guest at alioth.debian.org]

Author: charles-guest
Date: 2007-11-14 04:25:45 +0000 (Wed, 14 Nov 2007)
New Revision: 806

Modified:
   trunk/packages/dialign-t/trunk/debian/README.Debian
   trunk/packages/dialign-t/trunk/debian/control
   trunk/packages/dialign-t/trunk/debian/rules
Log:
Temporarly using -Os for building

Modified: trunk/packages/dialign-t/trunk/debian/README.Debian
===================================================================
--- trunk/packages/dialign-t/trunk/debian/README.Debian	2007-11-14 01:15:51 UTC (rev 805)
+++ trunk/packages/dialign-t/trunk/debian/README.Debian	2007-11-14 04:25:45 UTC (rev 806)
@@ -7,9 +7,10 @@
 
 Possible issues with this package:
 
- - dialign-t is compiled with the -O2 optimisation level, while in the upstream
-   sources -O3 is used. I will perform benchmarks later to see what is the most
-   appropriate.
+ - dialign-t is compiled with the -Os optimisation level, while in the upstream
+   sources -O3 is used. The reason is gcc-4.2, the current default compiler,
+   can not build dialign-t with -01,2 or 3. A benchmark made by aligning 43
+   bHLH proteins suggests that the impact on the speed is not worse than 10 %.
 
  - Users have no write acces to /usr/share/dialign-t, so problems are expected
    when running dialign-t -C.

Modified: trunk/packages/dialign-t/trunk/debian/control
===================================================================
--- trunk/packages/dialign-t/trunk/debian/control	2007-11-14 01:15:51 UTC (rev 805)
+++ trunk/packages/dialign-t/trunk/debian/control	2007-11-14 04:25:45 UTC (rev 806)
@@ -5,8 +5,8 @@
 Uploaders: Charles Plessy <charles-debian-nospam at plessy.org>
 Build-Depends: debhelper (>= 5), quilt
 Standards-Version: 3.7.2
-XS-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/dialign-t/trunk/
-XS-Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/dialign-t
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/dialign-t/trunk/
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/dialign-t
 Homepage: http://dialign-t.gobics.de/
 
 Package: dialign-t

Modified: trunk/packages/dialign-t/trunk/debian/rules
===================================================================
--- trunk/packages/dialign-t/trunk/debian/rules	2007-11-14 01:15:51 UTC (rev 805)
+++ trunk/packages/dialign-t/trunk/debian/rules	2007-11-14 04:25:45 UTC (rev 806)
@@ -6,7 +6,8 @@
 ifneq (,$(findstring noopt,$(DEB_BUILD_OPTIONS)))
 	CFLAGS += -O0
 else
-	CFLAGS += -O2
+	CFLAGS += -Os
+#	CFLAGS += -O2	Please revert to O2 when bug 446714 is fixed
 endif
 
 include /usr/share/quilt/quilt.make