[med-svn] r464 - in trunk/packages/njplot: . tags tags/0.20070618-1 tags/0.20070618-1/debian tags/0.20070618-1/debian/patches trunk/debian
tille at alioth.debian.org
tille at alioth.debian.org
Mon Oct 1 20:30:37 UTC 2007
Author: tille
Date: 2007-10-01 20:30:37 +0000 (Mon, 01 Oct 2007)
New Revision: 464
Added:
trunk/packages/njplot/tags/
trunk/packages/njplot/tags/0.20070618-1/
trunk/packages/njplot/tags/0.20070618-1/debian/
trunk/packages/njplot/tags/0.20070618-1/debian/README.Debian
trunk/packages/njplot/tags/0.20070618-1/debian/changelog
trunk/packages/njplot/tags/0.20070618-1/debian/compat
trunk/packages/njplot/tags/0.20070618-1/debian/control
trunk/packages/njplot/tags/0.20070618-1/debian/copyright
trunk/packages/njplot/tags/0.20070618-1/debian/dirs
trunk/packages/njplot/tags/0.20070618-1/debian/docs
trunk/packages/njplot/tags/0.20070618-1/debian/example.phb
trunk/packages/njplot/tags/0.20070618-1/debian/examples
trunk/packages/njplot/tags/0.20070618-1/debian/get-orig-source
trunk/packages/njplot/tags/0.20070618-1/debian/install
trunk/packages/njplot/tags/0.20070618-1/debian/links
trunk/packages/njplot/tags/0.20070618-1/debian/manpages
trunk/packages/njplot/tags/0.20070618-1/debian/menu
trunk/packages/njplot/tags/0.20070618-1/debian/njplot.1
trunk/packages/njplot/tags/0.20070618-1/debian/njplot.desktop
trunk/packages/njplot/tags/0.20070618-1/debian/patches/
trunk/packages/njplot/tags/0.20070618-1/debian/patches/00list
trunk/packages/njplot/tags/0.20070618-1/debian/patches/01_makefile.dpatch
trunk/packages/njplot/tags/0.20070618-1/debian/rules
trunk/packages/njplot/tags/0.20070618-1/debian/unrooted.1
trunk/packages/njplot/tags/0.20070618-1/debian/unrooted.desktop
Modified:
trunk/packages/njplot/trunk/debian/examples
Log:
Added further example and tagged 0.20070618-1
Added: trunk/packages/njplot/tags/0.20070618-1/debian/README.Debian
===================================================================
--- trunk/packages/njplot/tags/0.20070618-1/debian/README.Debian (rev 0)
+++ trunk/packages/njplot/tags/0.20070618-1/debian/README.Debian 2007-10-01 20:30:37 UTC (rev 464)
@@ -0,0 +1,21 @@
+njplot for DEBIAN
+-----------------
+
+Njplot is provided from an ftp archive (see copyright) in a simple
+tarball without any versioning information and documentation. To
+find out whether there is a new version you have to check the time
+stamps and sizes in the archive. To enable a clean packaging for
+Debian the versioning is done according to the lates file date and
+thus you get versions inside Debian like 0.YYYYMMDD. Moreover the
+orig.tar.gz tarball for Debian includes some documentation and
+example files that are provided from the njplot web site and
+ftp archive to build a useful tar archive of all needed files.
+
+The build process of this Debian source tarball is done in the
+file debian/get-orig-source which can be called in the debian/rules
+file via
+
+ make -f debian/rules get-orig-source
+
+
+Andreas Tille <tille at debian.org>, Mon, 01 Oct 2007 28:09:48 +0200
Added: trunk/packages/njplot/tags/0.20070618-1/debian/changelog
===================================================================
--- trunk/packages/njplot/tags/0.20070618-1/debian/changelog (rev 0)
+++ trunk/packages/njplot/tags/0.20070618-1/debian/changelog 2007-10-01 20:30:37 UTC (rev 464)
@@ -0,0 +1,147 @@
+njplot (0.20070618-1) unstable; urgency=low
+
+ * New upstream version
+ * New debian/README.Debian explaining the issue how a rebuilded
+ upstream source is needed.
+ * debian/get-orig-source: Code to obtain the orig.tar.gz
+ * debian/control: Replaced XBCS-URL by Homepage
+ * Switched to cdbs, dpatch
+ * debian/control: team maintainance
+ Maintainer: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+ Uploaders: Andreas Tille <tille at debian.org>
+
+ -- Andreas Tille <tille at debian.org> Mon, 01 Oct 2007 20:45:37 +0200
+
+njplot (0.20060606-3) unstable; urgency=low
+
+ * Fixed .desktop file (Thanks to Adri2000 <adri2000 at gmail.com>)
+ Closes: #401231
+
+ -- Andreas Tille <tille at debian.org> Tue, 12 Dec 2006 08:08:34 +0100
+
+njplot (0.20060606-2) unstable; urgency=low
+
+ * Added desktop files (thanks to Charles Plessy)
+ Closes: #380633
+
+ -- Andreas Tille <tille at debian.org> Tue, 1 Aug 2006 08:07:30 +0200
+
+njplot (0.20060606-1) unstable; urgency=low
+
+ * New upstream version
+ * Removed 'binary' from package description because njplot
+ now can draw all types of trees
+ * Replace dependencies "libvibrant6-dev | vibrant-dev, ncbi-tools6-dev"
+ by libncbi6-dev
+ * Replace dependency lesstif-dev by lesstif2-dev
+ Closes: #374230
+ * Standards-Version: 3.7.2 - no changes needed
+ * debian/compat: 5
+
+ -- Andreas Tille <tille at debian.org> Mon, 10 Jul 2006 08:25:26 +0200
+
+njplot (0.20051109-1) unstable; urgency=low
+
+ * New upstream version
+ * Build-Depends: libxt-dev instead of xlibs-dev
+ Closes: #347123
+ * Standards-Version: 3.6.2, no changes necessary
+
+ -- Andreas Tille <tille at debian.org> Mon, 9 Jan 2006 08:21:08 +0100
+
+njplot (0.20041129-2) unstable; urgency=low
+
+ * According to the ncbi maintainer switched back from
+ priority extra to optional because the package depends
+ now are adjusted
+ * Build-Depends now libvibrant6-dev | vibrant-dev
+
+ -- Andreas Tille <tille at debian.org> Wed, 1 Dec 2004 22:04:35 +0100
+
+njplot (0.20041129-1) unstable; urgency=low
+
+ * Fixed upstream version
+ * Standards-Version: 3.6.1.1
+ * Did not patched upstream makefile that much but moved own
+ patches to debian/rules
+ * Package was optional and has a Depends on vibrant6 (>= 6.1.20020828)
+ which is extra --> moved package to extra
+ * Added quotes to menu items
+ * Added information from the homepage
+
+ -- Andreas Tille <tille at debian.org> Wed, 1 Dec 2004 14:56:41 +0100
+
+njplot (0.20030331-1) unstable; urgency=low
+
+ * What difference does it make to the dead, the orphans and the homeless,
+ whether the mad destruction is wrought under the name of totalitarianism
+ or the holy name of liberty or democracy?
+ -- Mahatma Gandhi (1869 - 1948), "Non-Violence in Peace and War"
+ * New upstream version.
+
+ -- Andreas Tille <tille at debian.org> Wed, 23 Apr 2003 15:19:03 +0200
+
+njplot (0.20021017-1) unstable; urgency=low
+
+ * The "I'm against war" release
+ Mankind must put an end to war before war puts an end to mankind.
+ -- John F. Kennedy
+ * New upstream release
+ * New maintainer
+ * Build-Depends: debhelper (>= 4.0)
+ * Standards-Version: 3.5.9
+ * debian/compat now stores debhelper compatibility version
+ * Compliant to developers reference "6.3.2. Upstream home page" and
+ XBCS-URL: http://pbil.univ-lyon1.fr/software/njplot.html
+ * Added README from FTP-Server to docs
+ * Added examples from FTP-Server to examples
+ * use dh_installman instead of dh_installmanpages
+ * moved njplot.help to /usr/share/njplot
+ * added menu
+
+ -- Andreas Tille <tille at debian.org> Mon, 14 Apr 2003 08:06:48 +0200
+
+njplot (0.0-4) unstable; urgency=low
+
+ * Added CPPFLAGS=-DWIN_MOTIF in rules file
+ (closes: #134083)
+
+ -- Francesco Paolo Lovergine <frankie at debian.org> Mon, 18 Feb 2002 13:17:50 +0100
+
+njplot (0.0-3) unstable; urgency=low
+
+ * Maintainer set to Debian QA Group <packages at qa.debian.org>.
+
+ -- Adrian Bunk <bunk at fs.tum.de> Fri, 24 Aug 2001 23:36:54 +0200
+
+njplot (0.0-2) unstable; urgency=low
+
+ * Package adopted by new maintainer; closes: #92803, #48172
+ * Removed some unnecessary files in the debian directory.
+ * Updated to latest standards version (changed control and rules).
+ * Added Build-Depends; closes: #84579
+ * Modified dirs and copyright file.
+ * Wrote manpages for njplot and unrooted; closes: #34614
+ * Shifted package from section x11 to science.
+
+ -- Dr. Guenter Bechly <gbechly at debian.org> Tue, 10 Apr 2001 18:13:39 +0200
+
+njplot (0.0-1.1) unstable; urgency=low
+
+ * NMU.
+ * Recompile against lesstif1. Closes: #48172
+ * Updated to standards-version 3.0.1.
+ * FHS compliant.
+ * Lintian 1.9.2 clean.
+
+ -- Adam Heath <doogie at debian.org> Mon, 25 Oct 1999 16:32:42 -0500
+
+njplot (0.0-1) unstable; urgency=low
+
+ * Initial Release.
+
+ -- Stephane Bortzmeyer <bortzmeyer at debian.org> Sat, 6 Mar 1999 20:46:41 +0100
+
+Local variables:
+mode: debian-changelog
+End:
Added: trunk/packages/njplot/tags/0.20070618-1/debian/compat
===================================================================
--- trunk/packages/njplot/tags/0.20070618-1/debian/compat (rev 0)
+++ trunk/packages/njplot/tags/0.20070618-1/debian/compat 2007-10-01 20:30:37 UTC (rev 464)
@@ -0,0 +1 @@
+5
Added: trunk/packages/njplot/tags/0.20070618-1/debian/control
===================================================================
--- trunk/packages/njplot/tags/0.20070618-1/debian/control (rev 0)
+++ trunk/packages/njplot/tags/0.20070618-1/debian/control 2007-10-01 20:30:37 UTC (rev 464)
@@ -0,0 +1,20 @@
+Source: njplot
+Section: science
+Priority: optional
+Maintainer: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
+Build-Depends: cdbs, dpatch, debhelper (>= 5), libncbi6-dev, libvibrant6-dev, lesstif2-dev, libxt-dev
+Standards-Version: 3.7.2
+Homepage: http://pbil.univ-lyon1.fr/software/njplot.html
+
+Package: njplot
+Architecture: any
+Depends: ${shlibs:Depends}
+Description: [Biology] A tree drawing program
+ NJplot is able to draw any tree expressed in the standard
+ phylogenetic tree format (e.g., the format used by the Phylip package).
+ NJplot is especially convenient for rooting the unrooted trees
+ obtained from parsimony, distance or maximum likelihood tree-building
+ methods.
+ .
+ Homepage: http://pbil.univ-lyon1.fr/software/njplot.html
Added: trunk/packages/njplot/tags/0.20070618-1/debian/copyright
===================================================================
--- trunk/packages/njplot/tags/0.20070618-1/debian/copyright (rev 0)
+++ trunk/packages/njplot/tags/0.20070618-1/debian/copyright 2007-10-01 20:30:37 UTC (rev 464)
@@ -0,0 +1,19 @@
+This package was debianized by Stephane Bortzmeyer bortzmeyer at debian.org on
+Sat, 6 Mar 1999 20:46:41 +0100.
+
+The original tar archive is at
+ ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/njplot/njplot-unrooted.tar
+
+Reference server: http://pbil.univ-lyon1.fr/software/njplot.html
+
+Upstream Author:
+Manolo Gouy <mgouy at biomserv.univ-lyon1.fr>
+
+Copyright: Artistic
+
+This software is copyright (c) by Manolo Gouy
+
+You are free to distribute this software under the terms of
+the Artistic Licence.
+On Debian systems, the complete text of the Artistic
+Licence can be found in /usr/share/common-licenses/Artistic file.
Added: trunk/packages/njplot/tags/0.20070618-1/debian/dirs
===================================================================
--- trunk/packages/njplot/tags/0.20070618-1/debian/dirs (rev 0)
+++ trunk/packages/njplot/tags/0.20070618-1/debian/dirs 2007-10-01 20:30:37 UTC (rev 464)
@@ -0,0 +1,4 @@
+usr/bin
+usr/share/doc/njplot
+usr/share/njplot
+usr/share/man/man1
Added: trunk/packages/njplot/tags/0.20070618-1/debian/docs
===================================================================
--- trunk/packages/njplot/tags/0.20070618-1/debian/docs (rev 0)
+++ trunk/packages/njplot/tags/0.20070618-1/debian/docs 2007-10-01 20:30:37 UTC (rev 464)
@@ -0,0 +1,3 @@
+README
+*.html
+*.gif
Added: trunk/packages/njplot/tags/0.20070618-1/debian/example.phb
===================================================================
--- trunk/packages/njplot/tags/0.20070618-1/debian/example.phb (rev 0)
+++ trunk/packages/njplot/tags/0.20070618-1/debian/example.phb 2007-10-01 20:30:37 UTC (rev 464)
@@ -0,0 +1,13 @@
+(((((((Prorocentrum:0.0536, Tetrahymena:0.0721)45:0.0038, ((Oryza:0.0135, (Lycopersicon:0.0046,
+Citrus:0.0060)84:0.0025)100:0.0414, Saccharomyces:0.0494)55:0.0051)87:0.0102, (((Homo:0.0009,
+Mus:0.0019)100:0.0065, Xenopus:0.0093)100:0.0448, (Drosophila:0.0863,
+Caenorhabditis:0.0843)51:0.0029)66:0.0070)73:0.0062, Dictyostelium:0.1226)92:0.0132,
+Crithidia:0.1403)65:0.0095, Physarum:0.1347)100:0.1825, (((Rhodobacter:0.1032,
+(Pseudomonas:0.0468, (Escherichia:0.0399, Ruminobacter:0.0553)81:0.0103)100:0.0325)100:0.0301,
+(Leptospira:0.0932, (((Micrococcus:0.0380, Streptomyces:0.0478)100:0.0654,
+Pirellula:0.1269)27:0.0014, ((Anacystis:0.0490, EuglenaCP:0.1184)100:0.0341,
+(BacillusSubt:0.0262, BacillusStea:0.0184)100:0.0504)86:0.0148)33:0.0013)70:0.0073)93:0.0161,
+Thermus:0.1043)100:0.1052, (((Desulfurococcus:0.0412, Sulfolobus:0.0710)97:0.0145,
+Thermoproteus:0.0880)100:0.0521, ((Methanococcus:0.0927, Methanobacterium:0.1006)99:0.0282,
+(Thermoplasma:0.1526, (HalobacteriumH:0.0515, (Halococcus:0.0543,
+HalobacteriumM:0.0532)50:0.0030)100:0.1324)39:0.0027)72:0.0118)96:0.0130);
Added: trunk/packages/njplot/tags/0.20070618-1/debian/examples
===================================================================
--- trunk/packages/njplot/tags/0.20070618-1/debian/examples (rev 0)
+++ trunk/packages/njplot/tags/0.20070618-1/debian/examples 2007-10-01 20:30:37 UTC (rev 464)
@@ -0,0 +1,3 @@
+bigtest.phb
+test.ph
+debian/example.phb
Added: trunk/packages/njplot/tags/0.20070618-1/debian/get-orig-source
===================================================================
--- trunk/packages/njplot/tags/0.20070618-1/debian/get-orig-source (rev 0)
+++ trunk/packages/njplot/tags/0.20070618-1/debian/get-orig-source 2007-10-01 20:30:37 UTC (rev 464)
@@ -0,0 +1,39 @@
+#!/bin/sh -e
+NAME=njplot
+UTARBALL="$NAME"-unrooted.tar
+rm -rf tmp
+mkdir -p tmp
+cd tmp
+wget --quiet ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/"$NAME"/"$UTARBALL"
+tar -xf "$UTARBALL"
+rm -f "$UTARBALL"
+VERSION=`ls -lt | grep '^.rw.r' | sed -e '2,$d' -e 's/^.[-rwxr]\{9\} [0-9] \w\+ \w\+[[:space:]]\+[0-9]\+ \([0-9]\{4\}\)-\([0-9]\{2\}\)-\([0-9]\{2\}\).*/0.\1\2\3/'`
+mkdir "$NAME"-"$VERSION"
+mv *.c makefile "$NAME"-"$VERSION"
+cd "$NAME"-"$VERSION"
+
+MOREFILES="$NAME.help README bigtest.phb multi.phb test.ph"
+for mf in $MOREFILES ; do
+ wget --quiet ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/"$NAME"/$mf
+done
+
+wget --quiet http://pbil.univ-lyon1.fr/software/njplot.html
+wget --quiet http://pbil.univ-lyon1.fr/binaries/njplot.gif
+wget --quiet http://pbil.univ-lyon1.fr/help/helpers.html
+sed -e '/<TABLE BORDER=4 CELLPADDING=8>/,/<\/TABLE>/d' njplot.html \
+ -e 's/"\/binaries\/\(njplot.gif"\)/"\1/' \
+ -e 's/"\/help\/\(helpers.html"\)/"\1/' \
+ -e 's/"\(\/comments.html"\)/"http:\/\/pbil.univ-lyon1.fr\1/' \
+ -e 's/"\(\/pbil.html">\)<IMG SRC="\/binaries\/home.gif">/"http:\/\/pbil.univ-lyon1.fr\1PBIL home page/' \
+ -e '/<I>Back to PBIL home page<\/I>/d' \
+ > njplot_.html
+touch -r njplot.html njplot_.html
+mv njplot_.html njplot.html
+
+cd ..
+
+GZIP=-9 tar -czf "$NAME"_"$VERSION".orig.tar.gz "$NAME"-"$VERSION"
+
+mv "$NAME"_"$VERSION".orig.tar.gz ..
+cd ..
+rm -rf tmp
Added: trunk/packages/njplot/tags/0.20070618-1/debian/install
===================================================================
--- trunk/packages/njplot/tags/0.20070618-1/debian/install (rev 0)
+++ trunk/packages/njplot/tags/0.20070618-1/debian/install 2007-10-01 20:30:37 UTC (rev 464)
@@ -0,0 +1,3 @@
+njplot unrooted newickto* usr/bin
+njplot.help usr/share/njplot
+debian/*.desktop usr/share/applications
Added: trunk/packages/njplot/tags/0.20070618-1/debian/links
===================================================================
--- trunk/packages/njplot/tags/0.20070618-1/debian/links (rev 0)
+++ trunk/packages/njplot/tags/0.20070618-1/debian/links 2007-10-01 20:30:37 UTC (rev 464)
@@ -0,0 +1,2 @@
+usr/share/man/man1/njplot.1.gz usr/share/man/man1/newicktops.1.gz
+usr/share/man/man1/njplot.1.gz usr/share/man/man1/newicktotxt.1.gz
Added: trunk/packages/njplot/tags/0.20070618-1/debian/manpages
===================================================================
--- trunk/packages/njplot/tags/0.20070618-1/debian/manpages (rev 0)
+++ trunk/packages/njplot/tags/0.20070618-1/debian/manpages 2007-10-01 20:30:37 UTC (rev 464)
@@ -0,0 +1,2 @@
+debian/njplot.1
+debian/unrooted.1
Added: trunk/packages/njplot/tags/0.20070618-1/debian/menu
===================================================================
--- trunk/packages/njplot/tags/0.20070618-1/debian/menu (rev 0)
+++ trunk/packages/njplot/tags/0.20070618-1/debian/menu 2007-10-01 20:30:37 UTC (rev 464)
@@ -0,0 +1,6 @@
+?package(njplot):needs="X11" section="Apps/Science"\
+ title="NJPlot" command="/usr/bin/njplot"\
+ hints="Phylogenetic tree drawing program"
+?package(njplot):needs="X11" section="Apps/Science"\
+ title="NJPlot unrooted" command="/usr/bin/unrooted"\
+ hints="Phylogenetic tree drawing program"
Added: trunk/packages/njplot/tags/0.20070618-1/debian/njplot.1
===================================================================
--- trunk/packages/njplot/tags/0.20070618-1/debian/njplot.1 (rev 0)
+++ trunk/packages/njplot/tags/0.20070618-1/debian/njplot.1 2007-10-01 20:30:37 UTC (rev 464)
@@ -0,0 +1,75 @@
+.TH NJPLOT 1 "April 10, 2001"
+.SH NAME
+njplot \- A phylogenetic tree drawing program for biologists
+newicktops \- draw phylogenetic trees into PostScript file
+.SH SYNOPSIS
+.B njplot
+.RI [ options ] " tree_file"
+.P
+.B newicktops
+.RI [ options ] " tree_file"
+.P
+.B newicktotxt
+.RI [ options ] " tree_file"
+
+.SH DESCRIPTION
+This manual page documents briefly the
+.B njplot
+command.
+.P
+The
+.B newicktops
+command does exactly the same but has no graphical user interface.
+The output is rendered into a PostScript file.
+.P
+The
+.B newicktotxt
+command does exactly the same as
+.B newicktops
+but the output is rendered into a text file.
+.P
+This manual page was rewritten for the Debian GNU/Linux distribution
+because the original program does not have a manual page.
+.PP
+\fBnjplot\fP is a tree drawing program able to draw any binary tree expressed in
+the standard phylogenetic tree format (e.g., the format used by the PHYLIP package).
+NJplot is especially convenient for rooting the unrooted trees obtained from parsimony,
+distance or maximum likelihood tree-building methods.
+.P
+Any rooting of the unrooted tree can be interactively specified using the mouse. NJplot
+also allows zooming, branch swapping, display of bootstrap scores and printing in the
+PostScript format. NJplot can therefore be used as a graphical extension of any package of
+phylogenetic program which employs the standard tree format for storing trees (i.e., with
+most such packages).
+.SH OPTIONS
+There are only the following options which only work in an x-terminal-emulator, but not in console mode:
+.TP
+.B \-h
+Prints out brief help.
+.TP
+.B \-us
+Postscript tree file prepared for US Letter paper size.
+.TP
+.B \-psonly
+No window interface, just write the postscript tree file.
+.TP
+.B \-size n
+Font size n used for taxon names.
+.TP
+.B \-lengths
+Show branch lengths if they appear in tree file.
+.TP
+.B \-boot
+Show bootstrap values if they appear in tree file.
+.SH SEE ALSO
+.BR unrooted (1).
+.br
+.SH Word-Wide-Web:
+http://pbil.univ-lyon1.fr/software/njplot.html
+.SH AUTHOR:
+.I Manolo Gouy
+.br
+e-mail: mgouy at biomserv.univ-lyon1.fr
+.PP
+This manual page was written by Dr. Guenter Bechly <gbechly at debian.org>,
+for the Debian GNU/Linux system (but may be used by others).
Added: trunk/packages/njplot/tags/0.20070618-1/debian/njplot.desktop
===================================================================
--- trunk/packages/njplot/tags/0.20070618-1/debian/njplot.desktop (rev 0)
+++ trunk/packages/njplot/tags/0.20070618-1/debian/njplot.desktop 2007-10-01 20:30:37 UTC (rev 464)
@@ -0,0 +1,17 @@
+[Desktop Entry]
+Version=1.0
+Encoding=UTF-8
+Terminal=false
+Icon=njplot
+Exec=njplot
+Name=NJplot
+GenericName=Tree Plotter
+GenericName[en]=Tree Plotter
+GenericName[fr]=Traceur d'arbres
+GenericName[pt_BR]=Plotador de árvores
+Comment=Displays, modifies and exports in PostScript format phylogenetic trees
+Comment[en]=Displays, modifies and exports in PostScript format phylogenetic trees
+Comment[fr]=Affiche, modifie et exporte au format PostScript des arbres phyolgénétiques
+Comment[pt_BR]=Exibe, modifica e exporta em formato PostScript árvores filogenéticas
+Type=Application
+Categories=Biology;Science;Education;
Added: trunk/packages/njplot/tags/0.20070618-1/debian/patches/00list
===================================================================
--- trunk/packages/njplot/tags/0.20070618-1/debian/patches/00list (rev 0)
+++ trunk/packages/njplot/tags/0.20070618-1/debian/patches/00list 2007-10-01 20:30:37 UTC (rev 464)
@@ -0,0 +1 @@
+01_makefile.dpatch
Added: trunk/packages/njplot/tags/0.20070618-1/debian/patches/01_makefile.dpatch
===================================================================
--- trunk/packages/njplot/tags/0.20070618-1/debian/patches/01_makefile.dpatch (rev 0)
+++ trunk/packages/njplot/tags/0.20070618-1/debian/patches/01_makefile.dpatch 2007-10-01 20:30:37 UTC (rev 464)
@@ -0,0 +1,18 @@
+#! /bin/sh /usr/share/dpatch/dpatch-run
+## 01_makefile.dpatch by <tille at debian.org>
+##
+## All lines beginning with `## DP:' are a description of the patch.
+## DP: Leave out non-free pdflib
+
+ at DPATCH@
+
+--- njplot-0.20071001/makefile.orig 2007-06-18 13:52:06.000000000 +0200
++++ njplot-0.20070618/makefile 2007-10-01 21:28:51.000000000 +0200
+@@ -17,7 +17,6 @@
+ $(CC) $(DEBUG) -o $@ $(OBJNJPLOT) \
+ -L$(VIBRANT)/lib -lvibrant -lncbi \
+ -L$(MOTIFLIB) -lXm \
+- -L$(PDF) -lpdf \
+ -lXmu -lXt -lX11 -lm
+
+ unrooted: $(OBJUNROOTED)
Property changes on: trunk/packages/njplot/tags/0.20070618-1/debian/patches/01_makefile.dpatch
___________________________________________________________________
Name: svn:executable
+ *
Added: trunk/packages/njplot/tags/0.20070618-1/debian/rules
===================================================================
--- trunk/packages/njplot/tags/0.20070618-1/debian/rules (rev 0)
+++ trunk/packages/njplot/tags/0.20070618-1/debian/rules 2007-10-01 20:30:37 UTC (rev 464)
@@ -0,0 +1,16 @@
+#!/usr/bin/make -f
+# debian/rules for njplot using cdbs
+# Andreas Tille <tille at debian.org>, GPL
+
+include /usr/share/cdbs/1/rules/dpatch.mk
+include /usr/share/cdbs/1/rules/debhelper.mk
+include /usr/share/cdbs/1/class/makefile.mk
+
+DEB_OPT_FLAG=-I/usr/include/ncbi -DNO_PDF -DWIN_MOTIF
+
+get-orig-source:
+ . debian/get-orig-source
+
+# in case the original makefile is in place which has no clean target
+clean::
+ rm -f *.o njplot unrooted newicktops newicktotxt add_root
Property changes on: trunk/packages/njplot/tags/0.20070618-1/debian/rules
___________________________________________________________________
Name: svn:executable
+ *
Added: trunk/packages/njplot/tags/0.20070618-1/debian/unrooted.1
===================================================================
--- trunk/packages/njplot/tags/0.20070618-1/debian/unrooted.1 (rev 0)
+++ trunk/packages/njplot/tags/0.20070618-1/debian/unrooted.1 2007-10-01 20:30:37 UTC (rev 464)
@@ -0,0 +1,37 @@
+.TH UNROOTED 1 "April 10, 2001"
+.SH NAME
+unrooted \- A phylogenetic tree drawing program for biologists
+.SH SYNOPSIS
+.B unrooted
+.RI [ options ] " tree_file"
+.SH DESCRIPTION
+This manual page documents briefly the
+.B unrooted
+command.
+This manual page was rewritten for the Debian GNU/Linux distribution
+because the original program does not have a manual page.
+.PP
+\fBunrooted\fP is part of the \fBnjplot\fP tree drawing software package.
+.SH OPTIONS
+There are only the following options which only work in an x-terminal-emulator, but not in console mode:
+.TP
+.B \-h
+Prints out brief help.
+.TP
+.B \-us
+Postscript tree file prepared for US Letter paper size.
+.TP
+.B \-size n
+Font size n used for taxon names.
+.SH SEE ALSO
+.BR njplot (1).
+.br
+.SH Word-Wide-Web:
+http://pbil.univ-lyon1.fr/software/njplot.html
+.SH AUTHOR:
+.I Manolo Gouy
+.br
+e-mail: mgouy at biomserv.univ-lyon1.fr
+.PP
+This manual page was written by Dr. Guenter Bechly <gbechly at debian.org>,
+for the Debian GNU/Linux system (but may be used by others).
Added: trunk/packages/njplot/tags/0.20070618-1/debian/unrooted.desktop
===================================================================
--- trunk/packages/njplot/tags/0.20070618-1/debian/unrooted.desktop (rev 0)
+++ trunk/packages/njplot/tags/0.20070618-1/debian/unrooted.desktop 2007-10-01 20:30:37 UTC (rev 464)
@@ -0,0 +1,20 @@
+[Desktop Entry]
+Version=1.0
+Encoding=UTF-8
+Terminal=false
+Icon=unrooted
+Exec=unrooted
+Name=NJplot (unrooted)
+Name[en]=NJplot (unrooted)
+Name[fr]=NJplot (non enraciné)
+Name[pt_BR]=NJplot (não enraizado)
+GenericName=Tree Plotter
+GenericName[en]=Tree Plotter
+GenericName[fr]=Traceur d'arbres
+GenericName[pt_BR]=Plotador de árvores
+Comment=Displays and exports in PostScript format unrooted phylogenetic trees
+Comment[en]=Displays and exports in PostScript format unrooted phylogenetic trees
+Comment[fr]=Affiche et exporte au format PostScript des arbres phyolgénétiques non enracinés
+Comment[pt_BR]=Exibe e exporta em formato PostScript árvores filogenéticas não enraizadas
+Type=Application
+Categories=Biology;Science;Education;
Modified: trunk/packages/njplot/trunk/debian/examples
===================================================================
--- trunk/packages/njplot/trunk/debian/examples 2007-10-01 20:23:51 UTC (rev 463)
+++ trunk/packages/njplot/trunk/debian/examples 2007-10-01 20:30:37 UTC (rev 464)
@@ -1,2 +1,3 @@
bigtest.phb
test.ph
+debian/example.phb
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