[med-svn] r424 - in trunk/packages/exonerate/trunk/debian: . manpages

charles-guest at alioth.debian.org charles-guest at alioth.debian.org
Thu Sep 13 09:21:57 UTC 2007 

Author: charles-guest
Date: 2007-09-13 09:21:57 +0000 (Thu, 13 Sep 2007)
New Revision: 424

Added:
   trunk/packages/exonerate/trunk/debian/links
Removed:
   trunk/packages/exonerate/trunk/debian/exonerate.doc-base.EX
   trunk/packages/exonerate/trunk/debian/manpages/exonerate-client
   trunk/packages/exonerate/trunk/debian/manpages/exonerate-server
   trunk/packages/exonerate/trunk/debian/manpages/fasta2esd
   trunk/packages/exonerate/trunk/debian/manpages/fastaannotatecdna
   trunk/packages/exonerate/trunk/debian/manpages/fastachecksum
   trunk/packages/exonerate/trunk/debian/manpages/fastaclean
   trunk/packages/exonerate/trunk/debian/manpages/fastaclip
   trunk/packages/exonerate/trunk/debian/manpages/fastacomposition
   trunk/packages/exonerate/trunk/debian/manpages/fastadiff
   trunk/packages/exonerate/trunk/debian/manpages/fastaexplode
   trunk/packages/exonerate/trunk/debian/manpages/fastafetch
   trunk/packages/exonerate/trunk/debian/manpages/fastahardmask
   trunk/packages/exonerate/trunk/debian/manpages/fastaindex
   trunk/packages/exonerate/trunk/debian/manpages/fastalength
   trunk/packages/exonerate/trunk/debian/manpages/fastanrdb
   trunk/packages/exonerate/trunk/debian/manpages/fastareformat
   trunk/packages/exonerate/trunk/debian/manpages/fastaremove
   trunk/packages/exonerate/trunk/debian/manpages/fastarevcomp
   trunk/packages/exonerate/trunk/debian/manpages/fastasoftmask
   trunk/packages/exonerate/trunk/debian/manpages/fastasort
   trunk/packages/exonerate/trunk/debian/manpages/fastasplit
   trunk/packages/exonerate/trunk/debian/manpages/fastasubseq
   trunk/packages/exonerate/trunk/debian/manpages/fastatranslate
   trunk/packages/exonerate/trunk/debian/manpages/fastavalidcds
Modified:
   trunk/packages/exonerate/trunk/debian/control
   trunk/packages/exonerate/trunk/debian/copyright
   trunk/packages/exonerate/trunk/debian/exonerate.manpages
   trunk/packages/exonerate/trunk/debian/rules
Log:
Fixing manpages, changing owner, relicencing packaging, re-enabling glib.


Modified: trunk/packages/exonerate/trunk/debian/control
===================================================================
--- trunk/packages/exonerate/trunk/debian/control	2007-09-12 07:51:55 UTC (rev 423)
+++ trunk/packages/exonerate/trunk/debian/control	2007-09-13 09:21:57 UTC (rev 424)
@@ -1,9 +1,12 @@
 Source: exonerate
 Section: science
-Priority: extra
-Maintainer: Steffen Moeller <steffen_moeller at gmx.de>
+Priority: optional
+Maintainer: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Steffen Moeller <moeller at debian.org>, Charles Plessy <charles-debian-nospam at plessy.org>
 Build-Depends: debhelper (>= 5), autotools-dev, libglib1.2-dev
 Standards-Version: 3.7.2
+XS-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/exonerate/trunk/
+XS-Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/exonerate
 
 Package: exonerate
 Architecture: any

Modified: trunk/packages/exonerate/trunk/debian/copyright
===================================================================
--- trunk/packages/exonerate/trunk/debian/copyright	2007-09-12 07:51:55 UTC (rev 423)
+++ trunk/packages/exonerate/trunk/debian/copyright	2007-09-13 09:21:57 UTC (rev 424)
@@ -3,7 +3,7 @@
 
 It was downloaded from http://www.ebi.ac.uk/~guy/exonerate/
 
-Upstream Author(s): 
+Upstream Author: 
 
     Guy St. C. Slater <guy at ebi.ac.uk>
 
@@ -31,4 +31,4 @@
 Public License can be found in `/usr/share/common-licenses/LGPL'.
 
 The Debian packaging is (C) 2007, Steffen Moeller <steffen_moeller at gmx.de> and
-is licensed under the GPL, see `/usr/share/common-licenses/GPL'.
+is licensed under the LGPL, see `/usr/share/common-licenses/LGPL'.

Deleted: trunk/packages/exonerate/trunk/debian/exonerate.doc-base.EX
===================================================================
--- trunk/packages/exonerate/trunk/debian/exonerate.doc-base.EX	2007-09-12 07:51:55 UTC (rev 423)
+++ trunk/packages/exonerate/trunk/debian/exonerate.doc-base.EX	2007-09-13 09:21:57 UTC (rev 424)
@@ -1,22 +0,0 @@
-Document: exonerate
-Title: Debian exonerate Manual
-Author: <insert document author here>
-Abstract: This manual describes what exonerate is
- and how it can be used to
- manage online manuals on Debian systems.
-Section: unknown
-
-Format: debiandoc-sgml
-Files: /usr/share/doc/exonerate/exonerate.sgml.gz
-
-Format: postscript
-Files: /usr/share/doc/exonerate/exonerate.ps.gz
-
-Format: text
-Files: /usr/share/doc/exonerate/exonerate.text.gz
-
-Format: HTML
-Index: /usr/share/doc/exonerate/html/index.html
-Files: /usr/share/doc/exonerate/html/*.html
-
-  

Modified: trunk/packages/exonerate/trunk/debian/exonerate.manpages
===================================================================
--- trunk/packages/exonerate/trunk/debian/exonerate.manpages	2007-09-12 07:51:55 UTC (rev 423)
+++ trunk/packages/exonerate/trunk/debian/exonerate.manpages	2007-09-13 09:21:57 UTC (rev 424)
@@ -1,27 +1,3 @@
 doc/man/man1/exonerate.1
 doc/man/man1/ipcress.1
-debian/manpages/exonerate-client
-debian/manpages/exonerate-server
-debian/manpages/fasta2esd
-debian/manpages/fastaannotatecdna
-debian/manpages/fastachecksum
-debian/manpages/fastaclean
-debian/manpages/fastaclip
-debian/manpages/fastacomposition
-debian/manpages/fastadiff
-debian/manpages/fastaexplode
-debian/manpages/fastafetch
-debian/manpages/fastahardmask
-debian/manpages/fastaindex
-debian/manpages/fastalength
-debian/manpages/fastanrdb
 debian/manpages/fastaoverlap.1
-debian/manpages/fastareformat
-debian/manpages/fastaremove
-debian/manpages/fastarevcomp
-debian/manpages/fastasoftmask
-debian/manpages/fastasort
-debian/manpages/fastasplit
-debian/manpages/fastasubseq
-debian/manpages/fastatranslate
-debian/manpages/fastavalidcds

Added: trunk/packages/exonerate/trunk/debian/links
===================================================================
--- trunk/packages/exonerate/trunk/debian/links	                        (rev 0)
+++ trunk/packages/exonerate/trunk/debian/links	2007-09-13 09:21:57 UTC (rev 424)
@@ -0,0 +1,25 @@
+usr/share/man/man1/fastaoverlap.1.gz 	usr/share/man/man1/exonerate-client.1.gz
+usr/share/man/man1/fastaoverlap.1.gz	usr/share/man/man1/exonerate-server.1.gz
+usr/share/man/man1/fastaoverlap.1.gz	usr/share/man/man1/fasta2esd.1.gz
+usr/share/man/man1/fastaoverlap.1.gz	usr/share/man/man1/fastaannotatecdna.1.gz
+usr/share/man/man1/fastaoverlap.1.gz	usr/share/man/man1/fastachecksum.1.gz
+usr/share/man/man1/fastaoverlap.1.gz	usr/share/man/man1/fastaclean.1.gz
+usr/share/man/man1/fastaoverlap.1.gz	usr/share/man/man1/fastaclip.1.gz
+usr/share/man/man1/fastaoverlap.1.gz	usr/share/man/man1/fastacomposition.1.gz
+usr/share/man/man1/fastaoverlap.1.gz	usr/share/man/man1/fastadiff.1.gz
+usr/share/man/man1/fastaoverlap.1.gz	usr/share/man/man1/fastaexplode.1.gz
+usr/share/man/man1/fastaoverlap.1.gz	usr/share/man/man1/fastafetch.1.gz
+usr/share/man/man1/fastaoverlap.1.gz	usr/share/man/man1/fastahardmask.1.gz 
+usr/share/man/man1/fastaoverlap.1.gz	usr/share/man/man1/fastaindex.1.gz
+usr/share/man/man1/fastaoverlap.1.gz	usr/share/man/man1/fastalength.1.gz
+usr/share/man/man1/fastaoverlap.1.gz	usr/share/man/man1/fastanrdb.1.gz
+usr/share/man/man1/fastaoverlap.1.gz	usr/share/man/man1/fastareformat.1.gz
+usr/share/man/man1/fastaoverlap.1.gz	usr/share/man/man1/fastaremove.1.gz
+usr/share/man/man1/fastaoverlap.1.gz	usr/share/man/man1/fastarevcomp.1.gz
+usr/share/man/man1/fastaoverlap.1.gz	usr/share/man/man1/fastasoftmask.1.gz
+usr/share/man/man1/fastaoverlap.1.gz	usr/share/man/man1/fastasort.1.gz
+usr/share/man/man1/fastaoverlap.1.gz	usr/share/man/man1/fastasplit.1.gz
+usr/share/man/man1/fastaoverlap.1.gz	usr/share/man/man1/fastasubseq.1.gz
+usr/share/man/man1/fastaoverlap.1.gz	usr/share/man/man1/fastatranslate.1.gz
+usr/share/man/man1/fastaoverlap.1.gz	usr/share/man/man1/fastavalidcds.1.gz
+	

Deleted: trunk/packages/exonerate/trunk/debian/manpages/exonerate-client
===================================================================
--- trunk/packages/exonerate/trunk/debian/manpages/exonerate-client	2007-09-12 07:51:55 UTC (rev 423)
+++ trunk/packages/exonerate/trunk/debian/manpages/exonerate-client	2007-09-13 09:21:57 UTC (rev 424)
@@ -1 +0,0 @@
-link fastaoverlap
\ No newline at end of file

Deleted: trunk/packages/exonerate/trunk/debian/manpages/exonerate-server
===================================================================
--- trunk/packages/exonerate/trunk/debian/manpages/exonerate-server	2007-09-12 07:51:55 UTC (rev 423)
+++ trunk/packages/exonerate/trunk/debian/manpages/exonerate-server	2007-09-13 09:21:57 UTC (rev 424)
@@ -1 +0,0 @@
-link fastaoverlap
\ No newline at end of file

Deleted: trunk/packages/exonerate/trunk/debian/manpages/fasta2esd
===================================================================
--- trunk/packages/exonerate/trunk/debian/manpages/fasta2esd	2007-09-12 07:51:55 UTC (rev 423)
+++ trunk/packages/exonerate/trunk/debian/manpages/fasta2esd	2007-09-13 09:21:57 UTC (rev 424)
@@ -1 +0,0 @@
-link fastaoverlap
\ No newline at end of file

Deleted: trunk/packages/exonerate/trunk/debian/manpages/fastaannotatecdna
===================================================================
--- trunk/packages/exonerate/trunk/debian/manpages/fastaannotatecdna	2007-09-12 07:51:55 UTC (rev 423)
+++ trunk/packages/exonerate/trunk/debian/manpages/fastaannotatecdna	2007-09-13 09:21:57 UTC (rev 424)
@@ -1 +0,0 @@
-link fastaoverlap
\ No newline at end of file

Deleted: trunk/packages/exonerate/trunk/debian/manpages/fastachecksum
===================================================================
--- trunk/packages/exonerate/trunk/debian/manpages/fastachecksum	2007-09-12 07:51:55 UTC (rev 423)
+++ trunk/packages/exonerate/trunk/debian/manpages/fastachecksum	2007-09-13 09:21:57 UTC (rev 424)
@@ -1 +0,0 @@
-link fastaoverlap
\ No newline at end of file

Deleted: trunk/packages/exonerate/trunk/debian/manpages/fastaclean
===================================================================
--- trunk/packages/exonerate/trunk/debian/manpages/fastaclean	2007-09-12 07:51:55 UTC (rev 423)
+++ trunk/packages/exonerate/trunk/debian/manpages/fastaclean	2007-09-13 09:21:57 UTC (rev 424)
@@ -1 +0,0 @@
-link fastaoverlap
\ No newline at end of file

Deleted: trunk/packages/exonerate/trunk/debian/manpages/fastaclip
===================================================================
--- trunk/packages/exonerate/trunk/debian/manpages/fastaclip	2007-09-12 07:51:55 UTC (rev 423)
+++ trunk/packages/exonerate/trunk/debian/manpages/fastaclip	2007-09-13 09:21:57 UTC (rev 424)
@@ -1 +0,0 @@
-link fastaoverlap
\ No newline at end of file

Deleted: trunk/packages/exonerate/trunk/debian/manpages/fastacomposition
===================================================================
--- trunk/packages/exonerate/trunk/debian/manpages/fastacomposition	2007-09-12 07:51:55 UTC (rev 423)
+++ trunk/packages/exonerate/trunk/debian/manpages/fastacomposition	2007-09-13 09:21:57 UTC (rev 424)
@@ -1 +0,0 @@
-link fastaoverlap
\ No newline at end of file

Deleted: trunk/packages/exonerate/trunk/debian/manpages/fastadiff
===================================================================
--- trunk/packages/exonerate/trunk/debian/manpages/fastadiff	2007-09-12 07:51:55 UTC (rev 423)
+++ trunk/packages/exonerate/trunk/debian/manpages/fastadiff	2007-09-13 09:21:57 UTC (rev 424)
@@ -1 +0,0 @@
-link fastaoverlap
\ No newline at end of file

Deleted: trunk/packages/exonerate/trunk/debian/manpages/fastaexplode
===================================================================
--- trunk/packages/exonerate/trunk/debian/manpages/fastaexplode	2007-09-12 07:51:55 UTC (rev 423)
+++ trunk/packages/exonerate/trunk/debian/manpages/fastaexplode	2007-09-13 09:21:57 UTC (rev 424)
@@ -1 +0,0 @@
-link fastaoverlap
\ No newline at end of file

Deleted: trunk/packages/exonerate/trunk/debian/manpages/fastafetch
===================================================================
--- trunk/packages/exonerate/trunk/debian/manpages/fastafetch	2007-09-12 07:51:55 UTC (rev 423)
+++ trunk/packages/exonerate/trunk/debian/manpages/fastafetch	2007-09-13 09:21:57 UTC (rev 424)
@@ -1 +0,0 @@
-link fastaoverlap
\ No newline at end of file

Deleted: trunk/packages/exonerate/trunk/debian/manpages/fastahardmask
===================================================================
--- trunk/packages/exonerate/trunk/debian/manpages/fastahardmask	2007-09-12 07:51:55 UTC (rev 423)
+++ trunk/packages/exonerate/trunk/debian/manpages/fastahardmask	2007-09-13 09:21:57 UTC (rev 424)
@@ -1 +0,0 @@
-link fastaoverlap
\ No newline at end of file

Deleted: trunk/packages/exonerate/trunk/debian/manpages/fastaindex
===================================================================
--- trunk/packages/exonerate/trunk/debian/manpages/fastaindex	2007-09-12 07:51:55 UTC (rev 423)
+++ trunk/packages/exonerate/trunk/debian/manpages/fastaindex	2007-09-13 09:21:57 UTC (rev 424)
@@ -1 +0,0 @@
-link fastaoverlap
\ No newline at end of file

Deleted: trunk/packages/exonerate/trunk/debian/manpages/fastalength
===================================================================
--- trunk/packages/exonerate/trunk/debian/manpages/fastalength	2007-09-12 07:51:55 UTC (rev 423)
+++ trunk/packages/exonerate/trunk/debian/manpages/fastalength	2007-09-13 09:21:57 UTC (rev 424)
@@ -1 +0,0 @@
-link fastaoverlap
\ No newline at end of file

Deleted: trunk/packages/exonerate/trunk/debian/manpages/fastanrdb
===================================================================
--- trunk/packages/exonerate/trunk/debian/manpages/fastanrdb	2007-09-12 07:51:55 UTC (rev 423)
+++ trunk/packages/exonerate/trunk/debian/manpages/fastanrdb	2007-09-13 09:21:57 UTC (rev 424)
@@ -1 +0,0 @@
-link fastaoverlap
\ No newline at end of file

Deleted: trunk/packages/exonerate/trunk/debian/manpages/fastareformat
===================================================================
--- trunk/packages/exonerate/trunk/debian/manpages/fastareformat	2007-09-12 07:51:55 UTC (rev 423)
+++ trunk/packages/exonerate/trunk/debian/manpages/fastareformat	2007-09-13 09:21:57 UTC (rev 424)
@@ -1 +0,0 @@
-link fastaoverlap
\ No newline at end of file

Deleted: trunk/packages/exonerate/trunk/debian/manpages/fastaremove
===================================================================
--- trunk/packages/exonerate/trunk/debian/manpages/fastaremove	2007-09-12 07:51:55 UTC (rev 423)
+++ trunk/packages/exonerate/trunk/debian/manpages/fastaremove	2007-09-13 09:21:57 UTC (rev 424)
@@ -1 +0,0 @@
-link fastaoverlap
\ No newline at end of file

Deleted: trunk/packages/exonerate/trunk/debian/manpages/fastarevcomp
===================================================================
--- trunk/packages/exonerate/trunk/debian/manpages/fastarevcomp	2007-09-12 07:51:55 UTC (rev 423)
+++ trunk/packages/exonerate/trunk/debian/manpages/fastarevcomp	2007-09-13 09:21:57 UTC (rev 424)
@@ -1 +0,0 @@
-link fastaoverlap
\ No newline at end of file

Deleted: trunk/packages/exonerate/trunk/debian/manpages/fastasoftmask
===================================================================
--- trunk/packages/exonerate/trunk/debian/manpages/fastasoftmask	2007-09-12 07:51:55 UTC (rev 423)
+++ trunk/packages/exonerate/trunk/debian/manpages/fastasoftmask	2007-09-13 09:21:57 UTC (rev 424)
@@ -1 +0,0 @@
-link fastaoverlap
\ No newline at end of file

Deleted: trunk/packages/exonerate/trunk/debian/manpages/fastasort
===================================================================
--- trunk/packages/exonerate/trunk/debian/manpages/fastasort	2007-09-12 07:51:55 UTC (rev 423)
+++ trunk/packages/exonerate/trunk/debian/manpages/fastasort	2007-09-13 09:21:57 UTC (rev 424)
@@ -1 +0,0 @@
-link fastaoverlap
\ No newline at end of file

Deleted: trunk/packages/exonerate/trunk/debian/manpages/fastasplit
===================================================================
--- trunk/packages/exonerate/trunk/debian/manpages/fastasplit	2007-09-12 07:51:55 UTC (rev 423)
+++ trunk/packages/exonerate/trunk/debian/manpages/fastasplit	2007-09-13 09:21:57 UTC (rev 424)
@@ -1 +0,0 @@
-link fastaoverlap
\ No newline at end of file

Deleted: trunk/packages/exonerate/trunk/debian/manpages/fastasubseq
===================================================================
--- trunk/packages/exonerate/trunk/debian/manpages/fastasubseq	2007-09-12 07:51:55 UTC (rev 423)
+++ trunk/packages/exonerate/trunk/debian/manpages/fastasubseq	2007-09-13 09:21:57 UTC (rev 424)
@@ -1 +0,0 @@
-link fastaoverlap
\ No newline at end of file

Deleted: trunk/packages/exonerate/trunk/debian/manpages/fastatranslate
===================================================================
--- trunk/packages/exonerate/trunk/debian/manpages/fastatranslate	2007-09-12 07:51:55 UTC (rev 423)
+++ trunk/packages/exonerate/trunk/debian/manpages/fastatranslate	2007-09-13 09:21:57 UTC (rev 424)
@@ -1 +0,0 @@
-link fastaoverlap
\ No newline at end of file

Deleted: trunk/packages/exonerate/trunk/debian/manpages/fastavalidcds
===================================================================
--- trunk/packages/exonerate/trunk/debian/manpages/fastavalidcds	2007-09-12 07:51:55 UTC (rev 423)
+++ trunk/packages/exonerate/trunk/debian/manpages/fastavalidcds	2007-09-13 09:21:57 UTC (rev 424)
@@ -1 +0,0 @@
-link fastaoverlap
\ No newline at end of file

Modified: trunk/packages/exonerate/trunk/debian/rules
===================================================================
--- trunk/packages/exonerate/trunk/debian/rules	2007-09-12 07:51:55 UTC (rev 423)
+++ trunk/packages/exonerate/trunk/debian/rules	2007-09-13 09:21:57 UTC (rev 424)
@@ -33,7 +33,14 @@
 ifneq "$(wildcard /usr/share/misc/config.guess)" ""
 	cp -f /usr/share/misc/config.guess config.guess
 endif
-	./configure --host="$(DEB_HOST_GNU_TYPE)" --build="$(DEB_BUILD_GNU_TYPE)" --prefix=/usr --mandir=\$${prefix}/share/man --infodir=\$${prefix}/share/info --disable-glib2 CFLAGS="$(CFLAGS)" 
+	./configure 	--host="$(DEB_HOST_GNU_TYPE)" \
+			--build="$(DEB_BUILD_GNU_TYPE)" \
+			--prefix=/usr \
+			--mandir=\$${prefix}/share/man \
+			--infodir=\$${prefix}/share/info \
+			CFLAGS="$(CFLAGS)" 
+			#--disable-glib2
+
 	#./configure --host="$(DEB_HOST_GNU_TYPE)" --build="$(DEB_BUILD_GNU_TYPE)" --prefix=/usr --mandir=\$${prefix}/share/man --infodir=\$${prefix}/share/info CFLAGS="$(CFLAGS)" LDFLAGS="-Wl,-z,defs"
 
 
@@ -54,7 +61,7 @@
 	rm -f build-stamp 
 
 	# Add here commands to clean up after the build process.
-	-$(MAKE) distclean
+	[ ! -f Makefile ] || $(MAKE) distclean
 	rm -f config.sub config.guess
 	rm -rf codegen
 
@@ -92,8 +99,8 @@
 #	dh_installinit
 #	dh_installcron
 #	dh_installinfo
-	dh_installman
-	dh_link
+	dh_installman	# Installs three manpages
+	dh_link		# Makes symlinks to a common manpage
 	dh_strip
 	dh_compress
 	dh_fixperms

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