[med-svn] r1710 - in trunk/packages/ncbi-epcr/trunk/debian: . patches

Tue Apr 8 14:13:26 UTC 2008

Author: tille
Date: 2008-04-08 14:13:25 +0000 (Tue, 08 Apr 2008)
New Revision: 1710

Modified:
   trunk/packages/ncbi-epcr/trunk/debian/changelog
   trunk/packages/ncbi-epcr/trunk/debian/compat
   trunk/packages/ncbi-epcr/trunk/debian/control
   trunk/packages/ncbi-epcr/trunk/debian/ncbi-epcr.docs
   trunk/packages/ncbi-epcr/trunk/debian/patches/01_Makefiles.patch
   trunk/packages/ncbi-epcr/trunk/debian/rules
Log:
Group maintenance and other stuff


Modified: trunk/packages/ncbi-epcr/trunk/debian/changelog
===================================================================

--- trunk/packages/ncbi-epcr/trunk/debian/changelog	2008-04-08 14:10:18 UTC (rev 1709)
+++ trunk/packages/ncbi-epcr/trunk/debian/changelog	2008-04-08 14:13:25 UTC (rev 1710)
@@ -1,3 +1,17 @@
+epcr (1.2.0-4) unstable; urgency=low
+
+  * Group maintenance by Debian-Med team
+    - DM-Upload-Allowed: Yes
+    - Vcs tags
+    - Use correct address as Uploader: Steffen Moeller <moeller at debian.org>
+  * Removed [Biology] from short description
+  * Moved Homepage from long description to control fields
+  * Standards-Version: 3.7.3 (no changes needed)
+  * debhelper >= 5
+  * Patches using quilt
+
+ -- Andreas Tille <tille at debian.org>  Tue, 08 Apr 2008 15:50:46 +0200
+
 epcr (1.2.0-3) unstable; urgency=low
   * Added patch for compilation on Alpha (presumably)
     and IA64 (patch by Sebastian Muszynski, thanks

Modified: trunk/packages/ncbi-epcr/trunk/debian/compat
===================================================================
--- trunk/packages/ncbi-epcr/trunk/debian/compat	2008-04-08 14:10:18 UTC (rev 1709)
+++ trunk/packages/ncbi-epcr/trunk/debian/compat	2008-04-08 14:13:25 UTC (rev 1710)
@@ -1 +1 @@
-4
+5

Modified: trunk/packages/ncbi-epcr/trunk/debian/control
===================================================================
--- trunk/packages/ncbi-epcr/trunk/debian/control	2008-04-08 14:10:18 UTC (rev 1709)
+++ trunk/packages/ncbi-epcr/trunk/debian/control	2008-04-08 14:13:25 UTC (rev 1710)
@@ -1,33 +1,36 @@
 Source: epcr
 Section: science
 Priority: extra
-Maintainer: Steffen Moeller <moeller at pzr.uni-rostock.de>
-Build-Depends: debhelper (>= 4.0.0), docbook-to-man
-Standards-Version: 3.6.1
+Maintainer: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+DM-Upload-Allowed: yes
+Uploaders: Steffen Moeller <moeller at debian.org>,
+ Andreas Tille <tille at debian.org>
+Build-Depends: debhelper (>= 5.0), docbook-to-man, quilt
+Standards-Version: 3.7.3
+Homepage: http://www.ncbi.nlm.nih.gov/genome/sts/epcr.cgi
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/ncbi-epcr/trunk/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/ncbi-epcr/trunk/
 
 Package: ncbi-epcr
 Architecture: any
 Depends: ${shlibs:Depends}, ${misc:Depends}
 Recommends: bioperl, ncbi-epcr-data
-Description: [Biology] Tool to test a DNA sequence for the presence of sequence tagged sites
+Description: Tool to test a DNA sequence for the presence of sequence tagged sites
  Electronic PCR feature to test a DNA sequence for the presence of
  sequence tagged sites. e-PCR looks for STSs in DNA sequences by
  searching for subsequences that closely match the PCR primers and have
  the correct order, orientation, and spacing that they could plausibly
  prime the amplification of a PCR product of the correct molecular weight
  (Schuler, Genome Research 7:541-50, 1997).
- .
- Homepage: http://www.ncbi.nlm.nih.gov/genome/sts/epcr.cgi
 
+
 Package: ncbi-epcr-data
 Architecture: all
 Depends: ${shlibs:Depends}, ${misc:Depends}
 Recommends: ncbi-epcr
-Description: [Biology] NCBI public STS data 
+Description: NCBI public STS data 
  Databases with marker data.
  .
   dbsts.sts
   genethon.sts
   txmap.sts
- .
-  Homepage: http://www.ncbi.nlm.nih.gov/genome/sts/epcr.cgi

Modified: trunk/packages/ncbi-epcr/trunk/debian/ncbi-epcr.docs
===================================================================
--- trunk/packages/ncbi-epcr/trunk/debian/ncbi-epcr.docs	2008-04-08 14:10:18 UTC (rev 1709)
+++ trunk/packages/ncbi-epcr/trunk/debian/ncbi-epcr.docs	2008-04-08 14:13:25 UTC (rev 1710)
@@ -1 +1 @@
-README
+debian/README

Modified: trunk/packages/ncbi-epcr/trunk/debian/patches/01_Makefiles.patch
===================================================================
--- trunk/packages/ncbi-epcr/trunk/debian/patches/01_Makefiles.patch	2008-04-08 14:10:18 UTC (rev 1709)
+++ trunk/packages/ncbi-epcr/trunk/debian/patches/01_Makefiles.patch	2008-04-08 14:13:25 UTC (rev 1710)
@@ -14,7 +14,7 @@
 +install: all
  	(cd src && $(MAKE) install)
 +	mkdir -p $(DBPATH)/db && cp db/* $(DBPATH)/db
-+	mkdir -p $(DBPATH)/sample && cp samples/* $(DBPATH)/samples
++	mkdir -p $(DBPATH)/samples && cp samples/* $(DBPATH)/samples
  
  clean:
 -	(cd src && $(MAKE) clean)

Modified: trunk/packages/ncbi-epcr/trunk/debian/rules
===================================================================
--- trunk/packages/ncbi-epcr/trunk/debian/rules	2008-04-08 14:10:18 UTC (rev 1709)
+++ trunk/packages/ncbi-epcr/trunk/debian/rules	2008-04-08 14:13:25 UTC (rev 1710)
@@ -1,11 +1,13 @@
 #!/usr/bin/make -f
-# -*- makefile -*-
-# Sample debian/rules that uses debhelper.
-# GNU copyright 1997 to 1999 by Joey Hess.
+# debian/rules for clustalw-mpi
+# Copyright 2004-2008 Steffen Moeller, Andreas Tille
+# GPL
 
 # Uncomment this to turn on verbose mode.
 #export DH_VERBOSE=1
 
+include /usr/share/quilt/quilt.make
+
 CFLAGS = -Wall -g
 
 ifneq (,$(findstring noopt,$(DEB_BUILD_OPTIONS)))
@@ -24,34 +26,33 @@
 
 	touch configure-stamp
 
-build: build-stamp
+build: patch build-stamp
 
 build-stamp: configure-stamp 
 	dh_testdir
 
-	# Add here commands to compile the package.
 	$(MAKE)
 	/usr/bin/docbook-to-man debian/e-PCR.sgml > debian/e-PCR.1
 
 	touch build-stamp
 
-clean:
+clean-patched:
 	dh_testdir
 	dh_testroot
 	rm -f build-stamp configure-stamp
 
-	# Add here commands to clean up after the build process.
-	-$(MAKE) clean
+	$(MAKE) clean
 
 	dh_clean debian/e-PCR.1
 
+clean: clean-patched unpatch
+
 install: build
 	dh_testdir
 	dh_testroot
 	dh_clean -k 
 	dh_installdirs
 
-	# Add here commands to install the package into debian/e-pcr.
 	$(MAKE) install DESTDIR=$(CURDIR)/debian/ncbi-epcr
 
 


