[med-svn] r1730 - trunk/packages/amap-align/trunk/debian/patches

[charles-guest at alioth.debian.org]

Author: charles-guest
Date: 2008-04-10 00:04:04 +0000 (Thu, 10 Apr 2008)
New Revision: 1730

Modified:
   trunk/packages/amap-align/trunk/debian/patches/fix-gcc-4.3.diff
Log:
This patch works on version 2.2.

Modified: trunk/packages/amap-align/trunk/debian/patches/fix-gcc-4.3.diff
===================================================================
--- trunk/packages/amap-align/trunk/debian/patches/fix-gcc-4.3.diff	2008-04-09 16:29:01 UTC (rev 1729)
+++ trunk/packages/amap-align/trunk/debian/patches/fix-gcc-4.3.diff	2008-04-10 00:04:04 UTC (rev 1730)
@@ -1,12 +1,32 @@
 Allows building with gcc-4.3.
 Many thanks to Martin Michlmayr (http://bugs.debian.org/413477)
+and to Anibal Avelar (http://bugs.debian.org/468060)
 --- a/align/Amap.cc
 +++ b/align/Amap.cc
-@@ -12,6 +12,7 @@
+@@ -12,6 +12,8 @@
  #include "ProbabilisticModel.h"
  #include "EvolutionaryTree.h"
  #include "SparseMatrix.h"
++#include <limits>
 +#include <climits>
  #include <string>
  #include <sstream>
  #include <iomanip>
+@@ -23,6 +25,7 @@
+ #include <cstdlib>
+ #include <cerrno>
+ #include <iomanip>
++#include <cstring>
+ 
+ string parametersInputFilename = "";
+ string parametersOutputFilename = "no training";
+--- a/align/MultiSequenceDag.h
++++ b/align/MultiSequenceDag.h
+@@ -13,6 +13,7 @@
+ #include <map>
+ #include <queue>
+ #include <iostream>
++#include <limits>
+ #include "MultiSequence.h"
+ #include "SparseMatrix.h"
+