[med-svn] r1758 - in trunk/packages/libbio-mage-utils-perl/trunk/debian: . patches

Tue Apr 15 01:34:46 UTC 2008

Author: charles-guest
Date: 2008-04-15 01:34:45 +0000 (Tue, 15 Apr 2008)
New Revision: 1758

Added:
   trunk/packages/libbio-mage-utils-perl/trunk/debian/patches/
   trunk/packages/libbio-mage-utils-perl/trunk/debian/patches/move-MAGE-root.patch
   trunk/packages/libbio-mage-utils-perl/trunk/debian/patches/series
Modified:
   trunk/packages/libbio-mage-utils-perl/trunk/debian/control
   trunk/packages/libbio-mage-utils-perl/trunk/debian/copyright
   trunk/packages/libbio-mage-utils-perl/trunk/debian/rules
Log:
Cleaner packaging, but license is unclear.

Modified: trunk/packages/libbio-mage-utils-perl/trunk/debian/control
===================================================================

--- trunk/packages/libbio-mage-utils-perl/trunk/debian/control	2008-04-14 14:17:19 UTC (rev 1757)
+++ trunk/packages/libbio-mage-utils-perl/trunk/debian/control	2008-04-15 01:34:45 UTC (rev 1758)
@@ -1,10 +1,14 @@
 Source: libbio-mage-utils-perl
 Section: science
 Priority: optional
-Maintainer: Charles Plessy <charles-debian-nospam at plessy.org>
-Build-Depends: cdbs, debhelper (>= 5)
+Maintainer: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+DM-Upload-Allowed: yes
+Uploaders: Charles Plessy <charles-debian-nospam at plessy.org>
+Build-Depends: cdbs, quilt, debhelper (>= 5)
 Standards-Version: 3.7.3
 Homepage: http://mged.sourceforge.net/
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/libbio-mage-utils-perl/trunk/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/libbio-mage-utils-perl/trunk/
 
 Package: libbio-mage-utils-perl
 Architecture: all
@@ -12,5 +16,12 @@
 Depends: ${shlibs:Depends}, ${misc:Depends}, ${perl:Depends},
          libtie-ixhash-perl
 Suggests: libbio-mage-perl
-Description: <insert up to 60 chars description>
- <insert long description, indented with spaces>
+Description: Extra modules for classes in the MAGE package: MAGE
+ MAGE-TAB (MicroArray Gene Expression Tabular) format is a standard from the
+ Microarray Gene Expression Data Society (MGED). This package contains Perl
+ modules in the Bio::MAGE hierarchy to manipulate MIAME-compliant (Minimum
+ Information About a Microarray Experiment) records of microarray ("DNA chips")
+ experiments.
+ .
+ Bio-MAGE-Utils contains extra modules for handling MAGE XML and MGED ontology,
+ as well as SQL utilities.

Modified: trunk/packages/libbio-mage-utils-perl/trunk/debian/copyright
===================================================================
--- trunk/packages/libbio-mage-utils-perl/trunk/debian/copyright	2008-04-14 14:17:19 UTC (rev 1757)
+++ trunk/packages/libbio-mage-utils-perl/trunk/debian/copyright	2008-04-15 01:34:45 UTC (rev 1758)
@@ -1,24 +1,38 @@
-This package was debianized by Charles Plessy <charles-debian-nospam at plessy.org> on
-Fri, 11 Apr 2008 11:43:26 +0900.
+X-Format-Specification: http://wiki.debian.org/Proposals/CopyrightFormat
+X-Debianized-By: Charles Plessy <charles-debian-nospam at plessy.org>
+X-Debianized-Date: Fri, 11 Apr 2008 11:43:26 +0900
+X-Source-Downloaded-From: http://downloads.sourceforge.net/mged/Bio-MAGE-Utils-20030502.0.tar.gz
+Upstream Author: The MAGE-Perl Hackers <mged-mage-perl 'at' lists 'dot' sf 'dot' net>
 
-It was downloaded from <url://example.com>
+Files: debian/*
+Copyright: © 2008 Charles Plessy <charles-debian-nospam at plessy.org>
+License: Same as Bio-MAGE-Utils itself.
 
-Upstream Author(s): 
+Files: MAGE/Tools/*
+Copyright: © 2001-2002 The MicroArray Gene Expression Database Society (MGED)
+           © 2001-2002 Rosetta Inpharmatics
+License: MIT/X11
+ Permission is hereby granted, free of charge, to any person
+ obtaining a copy of this software and associated documentation files
+ (the "Software"), to deal in the Software without restriction,
+ including without limitation the rights to use, copy, modify, merge,
+ publish, distribute, sublicense, and/or sell copies of the Software,
+ and to permit persons to whom the Software is furnished to do so,
+ subject to the following conditions:
+ .
+ The above copyright notice and this permission notice shall be
+ included in all copies or substantial portions of the Software.
+ .
+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
+ EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
+ MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
+ NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS
+ BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN
+ ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN
+ CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+ SOFTWARE.
 
-    <put author's name and email here>
-    <likewise for another author>
-
-Copyright: 
-
-    <Copyright (C) YYYY Name OfAuthor>
-    <likewise for another author>
-
-License:
-
-    <Put the license of the package here indented by 4 spaces>
-
-The Debian packaging is (C) 2008, Charles Plessy <charles-debian-nospam at plessy.org> and
-is licensed under the GPL, see `/usr/share/common-licenses/GPL'.
-
-# Please also look if there are files or directories which have a
-# different copyright/license attached and list them here.
+Files: *
+Copyright: ©
+License: MIT/X11
+ (probably)

Added: trunk/packages/libbio-mage-utils-perl/trunk/debian/patches/move-MAGE-root.patch
===================================================================
--- trunk/packages/libbio-mage-utils-perl/trunk/debian/patches/move-MAGE-root.patch	                        (rev 0)
+++ trunk/packages/libbio-mage-utils-perl/trunk/debian/patches/move-MAGE-root.patch	2008-04-15 01:34:45 UTC (rev 1758)
@@ -0,0 +1,13 @@
+This patch is necessary for the installation process to complete
+and for third-party applications to function.
+--- a/Makefile.PL
++++ b/Makefile.PL
+@@ -2,7 +2,7 @@
+ # See lib/ExtUtils/MakeMaker.pm for details of how to influence
+ # the contents of the Makefile that is written.
+ WriteMakefile(
+-    'NAME'              => 'Bio::MAGE::Utils',
++    'NAME'              => 'Bio::MAGE',
+     'VERSION'           => '20030502.0',
+     'PREREQ_PM'         => {Tie::IxHash=>1.21},
+     ($] >= 5.005 ?

Added: trunk/packages/libbio-mage-utils-perl/trunk/debian/patches/series
===================================================================
--- trunk/packages/libbio-mage-utils-perl/trunk/debian/patches/series	                        (rev 0)
+++ trunk/packages/libbio-mage-utils-perl/trunk/debian/patches/series	2008-04-15 01:34:45 UTC (rev 1758)
@@ -0,0 +1 @@
+move-MAGE-root.patch

Modified: trunk/packages/libbio-mage-utils-perl/trunk/debian/rules
===================================================================
--- trunk/packages/libbio-mage-utils-perl/trunk/debian/rules	2008-04-14 14:17:19 UTC (rev 1757)
+++ trunk/packages/libbio-mage-utils-perl/trunk/debian/rules	2008-04-15 01:34:45 UTC (rev 1758)
@@ -1,4 +1,5 @@
 #!/usr/bin/make -f
-  
+
+include /usr/share/cdbs/1/rules/patchsys-quilt.mk
 include /usr/share/cdbs/1/rules/debhelper.mk
 include /usr/share/cdbs/1/class/perlmodule.mk


