[med-svn] r2376 - trunk/packages/cluster3/trunk/debian

Fri Aug 1 09:12:18 UTC 2008

Author: plessy
Date: 2008-08-01 09:12:16 +0000 (Fri, 01 Aug 2008)
New Revision: 2376

Added:
   trunk/packages/cluster3/trunk/debian/cluster3.1
Modified:
   trunk/packages/cluster3/trunk/debian/
   trunk/packages/cluster3/trunk/debian/changelog
   trunk/packages/cluster3/trunk/debian/control
Log:
Added myself to Uploaders and built the manpage.



Property changes on: trunk/packages/cluster3/trunk/debian
___________________________________________________________________
Name: mergeWithUpstream
   + 1

Modified: trunk/packages/cluster3/trunk/debian/changelog
===================================================================

--- trunk/packages/cluster3/trunk/debian/changelog	2008-08-01 08:44:18 UTC (rev 2375)
+++ trunk/packages/cluster3/trunk/debian/changelog	2008-08-01 09:12:16 UTC (rev 2376)
@@ -1,10 +1,17 @@
-cluster3 (1.27-0.1) unstable; urgency=low
+cluster3 (1.40-1) unstable; urgency=low
 
+  [ Steffen Moeller ]
   * New upstream release.
   * Improved on debian/rules.
   * Finally submitted ITP (Closes: Bug#286167).
  
- -- Steffen Moeller <moeller at pzr.uni-rostock.de>  Sat, 18 Dec 2004 01:39:00 +0200
+  [ Charles Plessy ]
+  * Initial release.
+  * Manpage built before source package generation, removed docbook-to-man
+    build dependancy. 
+
+ -- Charles Plessy <plessy at debian.org>  Fri, 01 Aug 2008 13:29:25 +0900
+
 cluster3 (1.25-0.2) unstable; urgency=low
 
   * Provides both the motif gui and command line interface.

Added: trunk/packages/cluster3/trunk/debian/cluster3.1
===================================================================
--- trunk/packages/cluster3/trunk/debian/cluster3.1	                        (rev 0)
+++ trunk/packages/cluster3/trunk/debian/cluster3.1	2008-08-01 09:12:16 UTC (rev 2376)
@@ -0,0 +1,74 @@
+.TH "CLUSTER3" "1" 
+.SH "NAME" 
+cluster3 \(em Eisen-clustering of microarray data 
+.SH "SYNOPSIS" 
+.PP 
+\fBcluster3\fR [\fB-f \fIfilename\fR\fP]  [\fB-l \fI0|1\fR\fP]  [\fB-u \fIjobname\fR\fP]  [\fB-g \fI[0..9]\fR\fP]  [\fB-e \fI[0..9]\fR\fP]  [\fB-m \fI[msca]\fR\fP]  [\fB-k \fInumber\fR\fP]  [\fB-s \fI0|1\fR\fP]  [\fB-x \fInumber\fR\fP]  [\fB-y \fInumber\fR\fP]  
+.SH "OPTIONS" 
+.IP "\fB-h\fP\fB\-\-help\fP" 10 
+Show summary of options. 
+.IP "\fB-f \fIfilename\fR\fP" 10 
+file loding 
+.IP "\fB-u \fIjobname\fR\fP" 10 
+Allows you to specify a different name for the output files (default is derived from the input file name) 
+.IP "\fB-l \fI0|1\fR\fP" 10 
+Specifies whether to log-transform the data (default is 0, no log-transform) 
+.IP "\fB-k \fInumber\fR\fP" 10 
+Specifies whether to run k-means clustering instead of hierarchical clustering, and the number of clusters k to use (default: 0) 
+.IP "\fB-x \fInumber\fR\fP" 10 
+Specifies the horizontal dimension of the SOM grid (default: 2) 
+.IP "\fB-y \fInumber\fR\fP" 10 
+Specifies the vertical dimension of the SOM grid (default: 1) 
+.IP "\fB-s \fI0|1\fR\fP" 10 
+Specifies whether to calculate an SOM instead of hierarchical clustering (default: 0) 
+.IP "\fB-v\fP           \fB\-\-version\fP         " 10 
+Show version of program. 
+.PP 
+\-g [0..9]     Specifies the distance measure for gene clustering 
+0: No gene clustering 
+1: Uncentered correlation 
+2: Pearson correlation 
+3: Uncentered correlation, absolute value 
+4: Pearson correlation, absolute value 
+5: Spearman's rank correlation 
+6: Kendall's tau 
+7: Euclidean distance 
+8: Harmonically summed Euclidean distance 
+9: City-block distance 
+(default: 1) 
+.PP 
+\-e [0..9]     Specifies the distance measure for microarray clustering 
+0: No clustering 
+1: Uncentered correlation 
+2: Pearson correlation 
+3: Uncentered correlation, absolute value 
+4: Pearson correlation, absolute value 
+5: Spearman's rank correlation 
+6: Kendall's tau 
+7: Euclidean distance 
+8: Harmonically summed Euclidean distance 
+9: City-block distance 
+(default: 0) 
+.PP 
+\-m [msca]     Specifies which hierarchical clustering method to use 
+m: Pairwise complete-linkage 
+s: Pairwise single-linkage 
+c: Pairwise centroid-linkage 
+a: Pairwise average-linkage 
+(default: m) 
+.SH "SEE ALSO" 
+.PP 
+mapletree (1), smile (1). 
+.SH "AUTHOR" 
+.PP 
+This manual page was written by Steffen Moeller moeller at pzr.uni-rostock.de for 
+the \fBDebian\fP system (but may be used by others).  Permission is 
+granted to copy, distribute and/or modify this document under 
+the terms of the GNU General Public License, Version 2 any  
+later version published by the Free Software Foundation. 
+ 
+.PP 
+On Debian systems, the complete text of the GNU General Public 
+License can be found in /usr/share/common-licenses/GPL. 
+ 
+.\" created by instant / docbook-to-man, Fri 01 Aug 2008, 13:32 

Modified: trunk/packages/cluster3/trunk/debian/control
===================================================================
--- trunk/packages/cluster3/trunk/debian/control	2008-08-01 08:44:18 UTC (rev 2375)
+++ trunk/packages/cluster3/trunk/debian/control	2008-08-01 09:12:16 UTC (rev 2376)
@@ -1,8 +1,9 @@
 Source: cluster3
 Section: non-free/science
 Priority: optional
-Maintainer: Steffen Moeller <moeller at pzr.uni-rostock.de>
-Build-Depends: debhelper (>= 4.0.0), docbook-to-man, libmotif-dev, autotools-dev, perl
+Maintainer: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Steffen Moeller <moeller at debian.org>, Charles Plessy <plessy at debian.org>
+Build-Depends: debhelper (>= 7), libmotif-dev, autotools-dev, perl
 Standards-Version: 3.6.1.1
 
 Package: cluster3


