[med-svn] r2384 - trunk/packages/exonerate/trunk/debian

[plessy at alioth.debian.org]

Author: plessy
Date: 2008-08-04 10:36:33 +0000 (Mon, 04 Aug 2008)
New Revision: 2384

Modified:
   trunk/packages/exonerate/trunk/debian/changelog
   trunk/packages/exonerate/trunk/debian/compat
   trunk/packages/exonerate/trunk/debian/control
   trunk/packages/exonerate/trunk/debian/rules
Log:
New upstream release.

  * debian/control, debian/compat: switched to debhelper 7.
  * debian/control:
    - Checked conformance with Policy 3.8.0.
    - Enhances: bioperl.
  * debian/rules: --enable-glib2 removed as now default.

I will try to enable the tests before uploading.


Modified: trunk/packages/exonerate/trunk/debian/changelog
===================================================================
--- trunk/packages/exonerate/trunk/debian/changelog	2008-08-04 08:44:01 UTC (rev 2383)
+++ trunk/packages/exonerate/trunk/debian/changelog	2008-08-04 10:36:33 UTC (rev 2384)
@@ -1,8 +1,17 @@
-exonerate (2.0.0-2) UNRELEASED; urgency=low
+exonerate (2.1.0-1) UNRELEASED; urgency=low
 
-  * NOT RELEASED YET
+  * New upstream release (LP: #254115).
+    - This version includes many optimisations and bug fixes for the
+      exonerate-server. It is now possible to search a whole human-sized
+      genome with a typical cDNA or protein query in under a second.
+    - Exonerate-server uses use pthreads by default.
+  * debian/control, debian/compat: switched to debhelper 7.
+  * debian/control:
+    - Checked conformance with Policy 3.8.0.
+    - Enhances: bioperl.
+  * debian/rules: --enable-glib2 removed as now default.
 
- -- Charles Plessy <plessy at debian.org>  Wed, 02 Jul 2008 19:30:58 +0900
+ -- Charles Plessy <plessy at debian.org>  Mon, 04 Aug 2008 19:13:05 +0900
 
 exonerate (2.0.0-1) unstable; urgency=low
 

Modified: trunk/packages/exonerate/trunk/debian/compat
===================================================================
--- trunk/packages/exonerate/trunk/debian/compat	2008-08-04 08:44:01 UTC (rev 2383)
+++ trunk/packages/exonerate/trunk/debian/compat	2008-08-04 10:36:33 UTC (rev 2384)
@@ -1 +1 @@
-5
+7

Modified: trunk/packages/exonerate/trunk/debian/control
===================================================================
--- trunk/packages/exonerate/trunk/debian/control	2008-08-04 08:44:01 UTC (rev 2383)
+++ trunk/packages/exonerate/trunk/debian/control	2008-08-04 10:36:33 UTC (rev 2384)
@@ -4,8 +4,8 @@
 Maintainer: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
 DM-Upload-Allowed: yes
 Uploaders: Steffen Moeller <moeller at debian.org>, Charles Plessy <plessy at debian.org>
-Build-Depends: debhelper (>= 5), autotools-dev, libglib2.0-dev, libreadline5-dev, cdbs
-Standards-Version: 3.7.3
+Build-Depends: debhelper (>= 7), autotools-dev, libglib2.0-dev, libreadline5-dev, cdbs
+Standards-Version: 3.8.0
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/exonerate/trunk/?rev=0&sc=0
 Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/exonerate/trunk/
 Homepage: http://www.ebi.ac.uk/~guy/exonerate/
@@ -14,6 +14,7 @@
 Architecture: any
 Depends: ${shlibs:Depends}, ${misc:Depends}
 Suggests: wise
+Enhances: bioperl
 Description: generic tool for pairwise sequence comparison
  Exonerate allows you to align sequences using a many alignment models, using
  either exhaustive dynamic programming, or a variety of heuristics. Much of
@@ -28,4 +29,3 @@
  .
  This package also comes with a selection of utilities for performing
  simple manipulations quickly on fasta files beyond 2Gb
-

Modified: trunk/packages/exonerate/trunk/debian/rules
===================================================================
--- trunk/packages/exonerate/trunk/debian/rules	2008-08-04 08:44:01 UTC (rev 2383)
+++ trunk/packages/exonerate/trunk/debian/rules	2008-08-04 10:36:33 UTC (rev 2384)
@@ -2,5 +2,3 @@
 
 include /usr/share/cdbs/1/class/autotools.mk
 include /usr/share/cdbs/1/rules/debhelper.mk
-
-DEB_CONFIGURE_EXTRA_FLAGS := --enable-glib2