[med-svn] r2389 - in trunk/packages/tacg/trunk/debian: . patches
plessy at alioth.debian.org
plessy at alioth.debian.org
Wed Aug 6 04:31:38 UTC 2008
Author: plessy
Date: 2008-08-06 04:31:38 +0000 (Wed, 06 Aug 2008)
New Revision: 2389
Added:
trunk/packages/tacg/trunk/debian/compat
Removed:
trunk/packages/tacg/trunk/debian/patches/path-to-data.patch
trunk/packages/tacg/trunk/debian/patches/series
trunk/packages/tacg/trunk/debian/patches/to-build-with-gcc4.patch
Modified:
trunk/packages/tacg/trunk/debian/changelog
trunk/packages/tacg/trunk/debian/control
trunk/packages/tacg/trunk/debian/rules
Log:
New upstream release, patches and autoconf gizmo hopefully not needed anymore.
I am in contact with the upstream author, who did not yet update the SourceForge website.
Modified: trunk/packages/tacg/trunk/debian/changelog
===================================================================
--- trunk/packages/tacg/trunk/debian/changelog 2008-08-04 19:01:30 UTC (rev 2388)
+++ trunk/packages/tacg/trunk/debian/changelog 2008-08-06 04:31:38 UTC (rev 2389)
@@ -1,4 +1,4 @@
-tacg (4.1.0-1) UNRELEASED; urgency=low
+tacg (4.3-1) UNRELEASED; urgency=low
* Initial release (Closes: #461504)
Added: trunk/packages/tacg/trunk/debian/compat
===================================================================
--- trunk/packages/tacg/trunk/debian/compat (rev 0)
+++ trunk/packages/tacg/trunk/debian/compat 2008-08-06 04:31:38 UTC (rev 2389)
@@ -0,0 +1 @@
+7
Modified: trunk/packages/tacg/trunk/debian/control
===================================================================
--- trunk/packages/tacg/trunk/debian/control 2008-08-04 19:01:30 UTC (rev 2388)
+++ trunk/packages/tacg/trunk/debian/control 2008-08-06 04:31:38 UTC (rev 2389)
@@ -4,8 +4,8 @@
Maintainer: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
DM-Upload-Allowed: yes
Uploaders: Charles Plessy <plessy at debian.org>
-Build-Depends: debhelper, quilt, cdbs, autotools-dev, automake1.10, autoconf
-Standards-Version: 3.7.3
+Build-Depends: debhelper (>= 7), quilt, cdbs, autotools-dev
+Standards-Version: 3.8.0
Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/tacg/?rev=0&sc=0
Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/tacg/
Homepage: http://tacg.sourceforge.net/
Deleted: trunk/packages/tacg/trunk/debian/patches/path-to-data.patch
===================================================================
Deleted: trunk/packages/tacg/trunk/debian/patches/series
===================================================================
--- trunk/packages/tacg/trunk/debian/patches/series 2008-08-04 19:01:30 UTC (rev 2388)
+++ trunk/packages/tacg/trunk/debian/patches/series 2008-08-06 04:31:38 UTC (rev 2389)
@@ -1,2 +0,0 @@
-to-build-with-gcc4.patch
-path-to-data.patch
Deleted: trunk/packages/tacg/trunk/debian/patches/to-build-with-gcc4.patch
===================================================================
--- trunk/packages/tacg/trunk/debian/patches/to-build-with-gcc4.patch 2008-08-04 19:01:30 UTC (rev 2388)
+++ trunk/packages/tacg/trunk/debian/patches/to-build-with-gcc4.patch 2008-08-06 04:31:38 UTC (rev 2389)
@@ -1,72 +0,0 @@
---- a/tacg.h
-+++ b/tacg.h
-@@ -168,23 +168,6 @@
- #define _XOPEN_SOURCE 500
-
-
--/* ------------------ Global declarations ------------------------ */
--
--extern struct RE_struct *RE;
--extern struct ORF_struct *ORFs[6];
--extern struct Digest_Data *DD;
--extern struct Prox_struct PP[10];
--extern struct PW_struct *PosWin;
--extern struct Clone_struct Clone_S[MAX_NUM_CLONE_RANGES];
--extern struct Rule_struct *Rules;
--extern struct flag_struct F;
--extern struct SE_struct *SelEnz[];
--extern char *sequence;
--extern long *Degen_Log;
--extern char *optarg;
--extern int optind, opterr, optopt;
--
--
- /* --------------------- Struct Declarations -------------------------- */
-
-
-@@ -438,6 +421,23 @@
- };
-
-
-+/* ------------------ Global declarations ------------------------ */
-+
-+extern struct RE_struct *RE;
-+extern struct ORF_struct *ORFs[6];
-+extern struct Digest_Data *DD;
-+extern struct Prox_struct PP[10];
-+extern struct PW_struct *PosWin;
-+extern struct Clone_struct Clone_S[MAX_NUM_CLONE_RANGES];
-+extern struct Rule_struct *Rules;
-+extern struct flag_struct F;
-+extern struct SE_struct *SelEnz[];
-+extern char *sequence;
-+extern long *Degen_Log;
-+extern char *optarg;
-+extern int optind, opterr, optopt;
-+
-+
- /*********************** Function Prototype Declarations ************************/
-
- /* fill_out_sum duplicates the degeneracy the correct # of times in the array 'sum[]' for submission
---- a/SeqFuncs.c
-+++ b/SeqFuncs.c
-@@ -1153,7 +1153,7 @@
- should have been functionized long ago */
-
- void LinearMap(long seq_len, int basesPerLine, int NumREs, char *sequence, int max_okline,
-- char Codons[][][], int codon_Table, int *Protos) {
-+ char Codons[8][64][7], int codon_Table, int *Protos) {
-
- /* Declarations */
- int i, d, k, mm=0, rc, n_letters=0, Xn=0, okline, HTML, spacer, spacermod, stanzaspace,
---- a/SetFlags.c
-+++ b/SetFlags.c
-@@ -826,7 +826,7 @@
- "\nThis is free software; see the source for copying conditions. There is NO"
- "\nwarranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.\n",
- TACG_VERSION);
-- fprintf (stdout, " Executable built: %s \n on kernel: %s\n GCC version: %s\n", TACG_BUILD_DATE, TACG_BUILD_PLATFORM, TACG_GCC_VER);
-+ /*fprintf (stdout, " Executable built: %s \n on kernel: %s\n GCC version: %s\n", TACG_BUILD_DATE, TACG_BUILD_PLATFORM, TACG_GCC_VER);*/
- exit(1);
- break;
-
Modified: trunk/packages/tacg/trunk/debian/rules
===================================================================
--- trunk/packages/tacg/trunk/debian/rules 2008-08-04 19:01:30 UTC (rev 2388)
+++ trunk/packages/tacg/trunk/debian/rules 2008-08-06 04:31:38 UTC (rev 2389)
@@ -1,9 +1,5 @@
#!/usr/bin/make -f
-DEB_AUTO_UPDATE_AUTOMAKE=1.10
-DEB_AUTO_UPDATE_ACLOCAL=1.10
-DEB_AUTO_UPDATE_AUTOCONF=2.61
-
include /usr/share/cdbs/1/rules/patchsys-quilt.mk
include /usr/share/cdbs/1/rules/debhelper.mk
include /usr/share/cdbs/1/class/autotools.mk
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