[med-svn] r2397 - in trunk/packages/biococoa/trunk/debian: . patches

Thu Aug 7 13:08:18 UTC 2008

Author: plessy
Date: 2008-08-07 13:08:17 +0000 (Thu, 07 Aug 2008)
New Revision: 2397

Added:
   trunk/packages/biococoa/trunk/debian/SequenceConverter.1
   trunk/packages/biococoa/trunk/debian/SequenceConverter.desktop
Removed:
   trunk/packages/biococoa/trunk/debian/BioCocoa.1
   trunk/packages/biococoa/trunk/debian/BioCocoa.desktop
Modified:
   trunk/packages/biococoa/trunk/debian/changelog
   trunk/packages/biococoa/trunk/debian/control
   trunk/packages/biococoa/trunk/debian/lintian-override
   trunk/packages/biococoa/trunk/debian/manpages
   trunk/packages/biococoa/trunk/debian/menu
   trunk/packages/biococoa/trunk/debian/patches/01_plist.patch
   trunk/packages/biococoa/trunk/debian/patches/03_GNUmakefile.patch
   trunk/packages/biococoa/trunk/debian/rules
Log:
Renamed BioCocoa to SequenceConverter, as it is not the library but the demo application.


Deleted: trunk/packages/biococoa/trunk/debian/BioCocoa.1
===================================================================

--- trunk/packages/biococoa/trunk/debian/BioCocoa.1	2008-08-07 00:13:44 UTC (rev 2396)
+++ trunk/packages/biococoa/trunk/debian/BioCocoa.1	2008-08-07 13:08:17 UTC (rev 2397)
@@ -1,27 +0,0 @@
-.TH BIOCOCOA 1 "December 21, 2004"
-.SH NAME
-BioCocoa \- Sequence file format conversion
-.SH SYNOPSIS
-.B BioCocoa
-.SH DESCRIPTION
-This manual page documents briefly the
-.B BioCocoa
-command.
-This manual page was written for the Debian distribution
-because the original program does not have a manual page.
-.PP
-\fBBioCocoa\fP provides developers with the opportunity to add
-support for reading and writing BEAST, Clustal, EMBL, Fasta, GCG-MSF, GDE,
-Hennig86, NCBI, NEXUS, NONA, PDB, Phylip, PIR, Plain/Raw, Swiss-Prot and
-TNT files by writing only three lines of code. The framework is written in
-Cocoa (Objective-C).
-.SH OPTIONS
-These programs follow the usual GNU command line syntax, with long
-options starting with two dashes (`-').
-A summary of options is included below.
-.SH SEE ALSO
-.BR GNUstep (7).
-.br
-.SH AUTHOR
-This manual page was written by G\[:u]rkan Seng\[:u]n <gurkan at linuks.mine.nu>,
-for the Debian project (but may be used by others).

Deleted: trunk/packages/biococoa/trunk/debian/BioCocoa.desktop
===================================================================
--- trunk/packages/biococoa/trunk/debian/BioCocoa.desktop	2008-08-07 00:13:44 UTC (rev 2396)
+++ trunk/packages/biococoa/trunk/debian/BioCocoa.desktop	2008-08-07 13:08:17 UTC (rev 2397)
@@ -1,8 +0,0 @@
-[Desktop Entry]
-Type=Application
-Version=0.94
-Categories=Education;Science;Biology;
-Name=BioCocoa
-Comment=GNUstep BioCocoa
-Icon=/usr/lib/GNUstep/Applications/BioCocoa.app/Resources/biococoa.tiff
-Exec=BioCocoa

Copied: trunk/packages/biococoa/trunk/debian/SequenceConverter.1 (from rev 2395, trunk/packages/biococoa/trunk/debian/BioCocoa.1)
===================================================================
--- trunk/packages/biococoa/trunk/debian/SequenceConverter.1	                        (rev 0)
+++ trunk/packages/biococoa/trunk/debian/SequenceConverter.1	2008-08-07 13:08:17 UTC (rev 2397)
@@ -0,0 +1,27 @@
+.TH SEQUENCECONVERTER 1 "December 21, 2004"
+.SH NAME
+SequenceConverter \- Sequence file format conversion
+.SH SYNOPSIS
+.B SequenceConverter
+.SH DESCRIPTION
+This manual page documents briefly the
+.B SequenceConverter
+command.
+This manual page was written for the Debian distribution
+because the original program does not have a manual page.
+.PP
+\fBSequenceConverter\fP provides developers with the opportunity to add
+support for reading and writing BEAST, Clustal, EMBL, Fasta, GCG-MSF, GDE,
+Hennig86, NCBI, NEXUS, NONA, PDB, Phylip, PIR, Plain/Raw, Swiss-Prot and
+TNT files by writing only three lines of code. The framework is written in
+Cocoa (Objective-C).
+.SH OPTIONS
+These programs follow the usual GNU command line syntax, with long
+options starting with two dashes (`-').
+A summary of options is included below.
+.SH SEE ALSO
+.BR GNUstep (7).
+.br
+.SH AUTHOR
+This manual page was written by G\[:u]rkan Seng\[:u]n <gurkan at linuks.mine.nu>,
+for the Debian project (but may be used by others).


Property changes on: trunk/packages/biococoa/trunk/debian/SequenceConverter.1
___________________________________________________________________
Name: svn:mergeinfo
   + 

Copied: trunk/packages/biococoa/trunk/debian/SequenceConverter.desktop (from rev 2395, trunk/packages/biococoa/trunk/debian/BioCocoa.desktop)
===================================================================
--- trunk/packages/biococoa/trunk/debian/SequenceConverter.desktop	                        (rev 0)
+++ trunk/packages/biococoa/trunk/debian/SequenceConverter.desktop	2008-08-07 13:08:17 UTC (rev 2397)
@@ -0,0 +1,8 @@
+[Desktop Entry]
+Type=Application
+Version=0.94
+Categories=Education;Science;Biology;
+Name=SequenceConverter
+Comment=GNUstep SequenceConverter
+Icon=/usr/lib/GNUstep/Applications/SequenceConverter.app/Resources/biococoa.tiff
+Exec=SequenceConverter


Property changes on: trunk/packages/biococoa/trunk/debian/SequenceConverter.desktop
___________________________________________________________________
Name: svn:mergeinfo
   + 

Modified: trunk/packages/biococoa/trunk/debian/changelog
===================================================================
--- trunk/packages/biococoa/trunk/debian/changelog	2008-08-07 00:13:44 UTC (rev 2396)
+++ trunk/packages/biococoa/trunk/debian/changelog	2008-08-07 13:08:17 UTC (rev 2397)
@@ -1,3 +1,13 @@
+biococoa.app (1.6.0-8) UNRELEASED; urgency=low
+
+  * Changed the name of the binary package `biococoa.app' to
+    `sequence-converter.app', and updated its description to match its
+    contents: this package does not contain the biococoa libraries, but 
+    the SequenceConverter demo application. (Closes: #493051)
+  * Added myself to the Uploaders.
+
+ -- Charles Plessy <plessy at debian.org>  Thu, 07 Aug 2008 09:39:50 +0900
+
 biococoa.app (1.6.0-7) unstable; urgency=low
 
   * Added Build-Depends quilt

Modified: trunk/packages/biococoa/trunk/debian/control
===================================================================
--- trunk/packages/biococoa/trunk/debian/control	2008-08-07 00:13:44 UTC (rev 2396)
+++ trunk/packages/biococoa/trunk/debian/control	2008-08-07 13:08:17 UTC (rev 2397)
@@ -10,10 +10,17 @@
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/biococoa/trunk/?rev=0&sc=0
 Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/biococoa/trunk/
 
-Package: biococoa.app
+Package: sequence-converter.app
 Architecture: any
 Depends: ${shlibs:Depends}
-Description: Sequence file format conversion for GNUstep
+Conflicts: biococoa.app ( < 1.6.0-8 )
+Replaces: biococoa.app ( < 1.6.0-8 )
+Provides: biococoa.app ( < 1.6.0-8 )
+Description: biological sequence file format conversion applet for GNUstep
+
+ Demo application to demonstrate the possibilities of the BioCocoa framework.
+ .
+ SequenceConverter is a GNUstep applet to convert between sequence file formats.
  The BioCocoa framework provides developers with the opportunity to add
  support for reading and writing BEAST, Clustal, EMBL, Fasta, GCG-MSF, GDE,
  Hennig86, NCBI, NEXUS, NONA, PDB, Phylip, PIR, Plain/Raw, Swiss-Prot and

Modified: trunk/packages/biococoa/trunk/debian/lintian-override
===================================================================
--- trunk/packages/biococoa/trunk/debian/lintian-override	2008-08-07 00:13:44 UTC (rev 2396)
+++ trunk/packages/biococoa/trunk/debian/lintian-override	2008-08-07 13:08:17 UTC (rev 2397)
@@ -1 +1 @@
-biococoa.app: image-file-in-usr-lib
+sequence-converter.app: image-file-in-usr-lib

Modified: trunk/packages/biococoa/trunk/debian/manpages
===================================================================
--- trunk/packages/biococoa/trunk/debian/manpages	2008-08-07 00:13:44 UTC (rev 2396)
+++ trunk/packages/biococoa/trunk/debian/manpages	2008-08-07 13:08:17 UTC (rev 2397)
@@ -1 +1 @@
-debian/BioCocoa.1
+debian/SequenceConverter.1

Modified: trunk/packages/biococoa/trunk/debian/menu
===================================================================
--- trunk/packages/biococoa/trunk/debian/menu	2008-08-07 00:13:44 UTC (rev 2396)
+++ trunk/packages/biococoa/trunk/debian/menu	2008-08-07 13:08:17 UTC (rev 2397)
@@ -1,2 +1,2 @@
-?package(biococoa.app):needs="X11" section="Applications/Science/Biology"\
-  title="BioCocoa" command="/usr/bin/BioCocoa"
+?package(sequence-converter.app):needs="X11" section="Applications/Science/Biology"\
+  title="SequenceConverter" command="/usr/bin/SequenceConverter"

Modified: trunk/packages/biococoa/trunk/debian/patches/01_plist.patch
===================================================================
--- trunk/packages/biococoa/trunk/debian/patches/01_plist.patch	2008-08-07 00:13:44 UTC (rev 2396)
+++ trunk/packages/biococoa/trunk/debian/patches/01_plist.patch	2008-08-07 13:08:17 UTC (rev 2397)
@@ -1,12 +1,14 @@
---- biococoa.orig/BioCocoaInfo.plist
-+++ biococoa/BioCocoaInfo.plist
+Index: biococoa.app-1.6.0/BioCocoaInfo.plist
+===================================================================
+--- biococoa.app-1.6.0.orig/BioCocoaInfo.plist
++++ biococoa.app-1.6.0/BioCocoaInfo.plist
 @@ -1,7 +1,7 @@
  {
 -  ApplicationName = BioCocoa
 -  ApplicationDescription = "GNUstep BioCocoaDemo";
 -  ApplicationRelease = BioCocoa 1.6";
-+  ApplicationName = "BioCocoa";
-+  ApplicationDescription = "GNUstep BioCocoa";
++  ApplicationName = "SequenceConverter";
++  ApplicationDescription = "GNUstep SequenceConverter";
 +  ApplicationRelease = "BioCocoa 1.6";
    FullVersionID = "1.6.0 Nov 2004";
    Authors = ("Peter Schols <peter.schols at bio.kuleuven.ac.be>");

Modified: trunk/packages/biococoa/trunk/debian/patches/03_GNUmakefile.patch
===================================================================
--- trunk/packages/biococoa/trunk/debian/patches/03_GNUmakefile.patch	2008-08-07 00:13:44 UTC (rev 2396)
+++ trunk/packages/biococoa/trunk/debian/patches/03_GNUmakefile.patch	2008-08-07 13:08:17 UTC (rev 2397)
@@ -1,5 +1,7 @@
---- biococoa.orig/GNUmakefile
-+++ biococoa/GNUmakefile
+Index: biococoa.app-1.6.0/GNUmakefile
+===================================================================
+--- biococoa.app-1.6.0.orig/GNUmakefile
++++ biococoa.app-1.6.0/GNUmakefile
 @@ -1,12 +1,14 @@
  #   GNUmakefile: makefile for Biococoa
  #
@@ -16,12 +18,20 @@
  #   the Free Software Foundation; either version 2 of the License, or
  #   (at your option) any later version.
  #   
-@@ -25,7 +27,7 @@
- BioCocoa_HEADERS = Controller.h Interface.h BCReader.h BCCreator.h StringAdditions.h
- BioCocoa_OBJC_FILES = main.m Controller.m Interface.m BCReader.m BCCreator.m StringAdditions.m
- BioCocoa_APPLICATION_ICON = biococoa.tiff
+@@ -21,11 +23,11 @@
+ 
+ include $(GNUSTEP_MAKEFILES)/common.make
+ 
+-APP_NAME = BioCocoa
+-BioCocoa_HEADERS = Controller.h Interface.h BCReader.h BCCreator.h StringAdditions.h
+-BioCocoa_OBJC_FILES = main.m Controller.m Interface.m BCReader.m BCCreator.m StringAdditions.m
+-BioCocoa_APPLICATION_ICON = biococoa.tiff
 -BioCocoa_RESOURCE_FILES = biococoa.tiff
-+BioCocoa_RESOURCE_FILES = biococoa.tiff BioCocoaInfo.plist
++APP_NAME = SequenceConverter
++SequenceConverter_HEADERS = Controller.h Interface.h BCReader.h BCCreator.h StringAdditions.h
++SequenceConverter_OBJC_FILES = main.m Controller.m Interface.m BCReader.m BCCreator.m StringAdditions.m
++SequenceConverter_APPLICATION_ICON = biococoa.tiff
++SequenceConverter_RESOURCE_FILES = biococoa.tiff SequenceConverter.plist
  
  include $(GNUSTEP_MAKEFILES)/application.make
  

Modified: trunk/packages/biococoa/trunk/debian/rules
===================================================================
--- trunk/packages/biococoa/trunk/debian/rules	2008-08-07 00:13:44 UTC (rev 2396)
+++ trunk/packages/biococoa/trunk/debian/rules	2008-08-07 13:08:17 UTC (rev 2397)
@@ -26,8 +26,8 @@
 	dh_testroot
 	dh_clean -k 
 	dh_installdirs
-	gs_make install DESTDIR=$(CURDIR)/debian/biococoa.app GNUSTEP_INSTALLATION_DOMAIN=SYSTEM
-	find `pwd`/debian/biococoa.app -name "*.plist" -exec chmod -x {} \;
+	gs_make install DESTDIR=$(CURDIR)/debian/sequence-converter.app GNUSTEP_INSTALLATION_DOMAIN=SYSTEM
+	find `pwd`/debian/sequence-converter.app -name "*.plist" -exec chmod -x {} \;
 	dh_install debian/*.desktop usr/share/applications/
 	rm $(CURDIR)/debian/*.app/usr/lib/GNUstep/Applications/*.app/Resources/*.desktop
 
@@ -40,7 +40,7 @@
 	dh_testdir
 	dh_testroot
 	dh_installchangelogs
-	install -m 644 debian/lintian-override $(CURDIR)/debian/biococoa.app/usr/share/lintian/overrides/biococoa.app
+	install -m 644 debian/lintian-override $(CURDIR)/debian/sequence-converter.app/usr/share/lintian/overrides/sequence-converter.app
 	dh_installdocs
 	dh_installmenu
 	dh_installman


