[med-svn] r2757 - trunk/packages/fastlink/trunk/debian

[tille at alioth.debian.org]

Author: tille
Date: 2008-12-08 18:39:07 +0000 (Mon, 08 Dec 2008)
New Revision: 2757

Modified:
   trunk/packages/fastlink/trunk/debian/changelog
   trunk/packages/fastlink/trunk/debian/control
   trunk/packages/fastlink/trunk/debian/copyright
   trunk/packages/fastlink/trunk/debian/lodscore.1
   trunk/packages/fastlink/trunk/debian/rules
Log:
New upstream bugfix release; machine readable copyright format, bugfixes


Modified: trunk/packages/fastlink/trunk/debian/changelog
===================================================================
--- trunk/packages/fastlink/trunk/debian/changelog	2008-12-07 11:02:57 UTC (rev 2756)
+++ trunk/packages/fastlink/trunk/debian/changelog	2008-12-08 18:39:07 UTC (rev 2757)
@@ -1,3 +1,15 @@
+fastlink (4.1P-fix95-1) UNRELEASED; urgency=low
+
+  * New upstream bugfix release
+  * FIXME: Description
+  * Standards-Version: 3.8.0 (no changes needed)
+  * Removed explicite versioning from cdbs and debhelper
+  * Machine readable copyright files
+  * debian/loadscore.1: s?\.5?1/2? because man treated .5 as control
+  * 
+
+ -- Andreas Tille <tille at debian.org>  Mon, 08 Dec 2008 19:35:59 +0100
+
 fastlink (4.1P-fix94b-2) unstable; urgency=low
 
   * Changed the doc-base section according to the new policy.

Modified: trunk/packages/fastlink/trunk/debian/control
===================================================================
--- trunk/packages/fastlink/trunk/debian/control	2008-12-07 11:02:57 UTC (rev 2756)
+++ trunk/packages/fastlink/trunk/debian/control	2008-12-08 18:39:07 UTC (rev 2757)
@@ -5,8 +5,8 @@
 DM-Upload-Allowed: yes
 Uploaders: Andreas Tille <tille at debian.org>,
  Charles Plessy <plessy at debian.org>
-Build-Depends: cdbs (>= 0.4.23-1.1), debhelper (>= 5), quilt
-Standards-Version: 3.7.3
+Build-Depends: cdbs, debhelper, quilt
+Standards-Version: 3.8.0
 Homepage: http://www.ncbi.nlm.nih.gov/CBBResearch/Schaffer/fastlink.html
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/fastlink/?rev=0&sc=0
 Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/fastlink/trunk/

Modified: trunk/packages/fastlink/trunk/debian/copyright
===================================================================
--- trunk/packages/fastlink/trunk/debian/copyright	2008-12-07 11:02:57 UTC (rev 2756)
+++ trunk/packages/fastlink/trunk/debian/copyright	2008-12-08 18:39:07 UTC (rev 2757)
@@ -1,14 +1,28 @@
-This package was debianized by Andreas Tille <tille at debian.org> on
-Wed,  1 Dec 2004 14:19:29 +0100.
+X-Format-Specification: http://wiki.debian.org/Proposals/CopyrightFormat
+X-Debianized-By: Andreas Tille <tille at debian.org>
+X-Debinized-Date: Wed,  1 Dec 2004 14:19:29 +0100.
+X-Source-Downloaded-From: ftp://fastlink.nih.gov/pub/fastlink/fastlink.tar.Z
+X-Upstream-Author: Alejandro Schaffer <schaffer at nchgr.nih.gov>
+X-Homepage: http://www.ncbi.nlm.nih.gov/CBBResearch/Schaffer/fastlink.html
 
-It was downloaded from ftp://fastlink.nih.gov/pub/fastlink/fastlink.tar.Z
-Homepage: http://www.ncbi.nlm.nih.gov/CBBResearch/Schaffer/fastlink.html
+Files: *
+Copyright: (C) 2000-2007 Alejandro Schaffer <schaffer at nchgr.nih.gov> 
+ This program is free software; you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation; either version 2 of the License, or
+ (at your option) any later version.
+ .
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ GNU General Public License for more details.
+ .
+ You should have received a copy of the GNU General Public License along
+ with this program; if not, write to the Free Software Foundation, Inc.,
+ 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+X-Comment: On Debian systems, the complete text of the GNU General Public
+ License can be found in `/usr/share/common-licenses/GPL'.
 
-Upstream Author: Alejandro Schaffer <schaffer at nchgr.nih.gov>
-
-Copyright: GPL
-
-You are free to distribute this software under the terms of
-the GNU General Public Licence.
-On Debian systems, the complete text of the GNU General Public
-Licence can be found in /usr/share/common-licenses/GPL file.
+Files: debian/*
+Copyright: 2003-2008 Andreas Tille <tille at debian.org> on
+License: Same as fastlink itself

Modified: trunk/packages/fastlink/trunk/debian/lodscore.1
===================================================================
--- trunk/packages/fastlink/trunk/debian/lodscore.1	2008-12-07 11:02:57 UTC (rev 2756)
+++ trunk/packages/fastlink/trunk/debian/lodscore.1	2008-12-08 18:39:07 UTC (rev 2757)
@@ -16,7 +16,7 @@
 .B Lodscore
 compares -2log(likelihood)
 at the locally optimal theta to -2log(likelihood) at a theta that is
-.5 in every component (i.e. each locus unlinked to all the rest).
+1/2 in every component (i.e. each locus unlinked to all the rest).
 In LINKAGE ILINK more likelihood function evaluations are done after
 the last printed iteration line, but these likelihood function
 evaluations are unnecessary (see paper2.ps from the

Modified: trunk/packages/fastlink/trunk/debian/rules
===================================================================
--- trunk/packages/fastlink/trunk/debian/rules	2008-12-07 11:02:57 UTC (rev 2756)
+++ trunk/packages/fastlink/trunk/debian/rules	2008-12-08 18:39:07 UTC (rev 2757)
@@ -14,3 +14,6 @@
 
 install/fastlink::
 	dh_desktop
+
+get-orig-source:
+	sh debian/get-orig-source