[med-svn] r2826 - trunk/packages/perlprimer/trunk/debian
plessy at alioth.debian.org
plessy at alioth.debian.org
Sun Dec 21 13:07:11 UTC 2008
Author: plessy
Date: 2008-12-21 13:07:10 +0000 (Sun, 21 Dec 2008)
New Revision: 2826
Added:
trunk/packages/perlprimer/trunk/debian/README.source
trunk/packages/perlprimer/trunk/debian/reference
Modified:
trunk/packages/perlprimer/trunk/debian/changelog
trunk/packages/perlprimer/trunk/debian/compat
trunk/packages/perlprimer/trunk/debian/control
trunk/packages/perlprimer/trunk/debian/copyright
trunk/packages/perlprimer/trunk/debian/perlprimer.docs
Log:
New upstream release.
* New upstream release restoring URL compatibility with Ensembl.
* debian/co{mpat,ntrol}: using Debhelper 7.
* debian/reference: BibTeX reference.
* debian/README.source, debian/control: added explanations about
patch system, to comply with Policy 3.8.0.
* debian/copyright:
- updated Upstream's copyright years.
- updated to latest version of the machine-readable format.
Added: trunk/packages/perlprimer/trunk/debian/README.source
===================================================================
--- trunk/packages/perlprimer/trunk/debian/README.source (rev 0)
+++ trunk/packages/perlprimer/trunk/debian/README.source 2008-12-21 13:07:10 UTC (rev 2826)
@@ -0,0 +1,6 @@
+This package uses dpatch to manage all modifications to the upstream
+source. Changes are stored in the source package as diffs in
+debian/patches and applied during the build.
+
+Please refere to the instructions in the following file:
+/usr/share/doc/dpatch/README.source.gz
Modified: trunk/packages/perlprimer/trunk/debian/changelog
===================================================================
--- trunk/packages/perlprimer/trunk/debian/changelog 2008-12-20 18:02:53 UTC (rev 2825)
+++ trunk/packages/perlprimer/trunk/debian/changelog 2008-12-21 13:07:10 UTC (rev 2826)
@@ -1,3 +1,16 @@
+perlprimer (1.1.16-1) unstable; urgency=low
+
+ * New upstream release restoring URL compatibility with Ensembl.
+ * debian/co{mpat,ntrol}: using Debhelper 7.
+ * debian/reference: BibTeX reference.
+ * debian/README.source, debian/control: added explanations about
+ patch system, to comply with Policy 3.8.0.
+ * debian/copyright:
+ - updated Upstream's copyright years.
+ - updated to latest version of the machine-readable format.
+
+ -- Charles Plessy <plessy at debian.org> Sat, 20 Dec 2008 16:43:03 +0100
+
perlprimer (1.1.14-3) unstable; urgency=low
* Changed the doc-base section according to the new policy.
Modified: trunk/packages/perlprimer/trunk/debian/compat
===================================================================
--- trunk/packages/perlprimer/trunk/debian/compat 2008-12-20 18:02:53 UTC (rev 2825)
+++ trunk/packages/perlprimer/trunk/debian/compat 2008-12-21 13:07:10 UTC (rev 2826)
@@ -1 +1 @@
-5
+7
Modified: trunk/packages/perlprimer/trunk/debian/control
===================================================================
--- trunk/packages/perlprimer/trunk/debian/control 2008-12-20 18:02:53 UTC (rev 2825)
+++ trunk/packages/perlprimer/trunk/debian/control 2008-12-21 13:07:10 UTC (rev 2826)
@@ -6,8 +6,8 @@
Uploaders: Steffen Moeller <moeller at debian.org>,
Charles Plessy <plessy at debian.org>,
Andreas Tille <tille at debian.org>
-Build-Depends: debhelper (>= 5), quilt, cdbs
-Standards-Version: 3.7.3
+Build-Depends: debhelper (>= 7), quilt, cdbs
+Standards-Version: 3.8.0
Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/perlprimer/trunk/?rev=0&sc=0
Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/perlprimer/trunk/
Homepage: http://perlprimer.sourceforge.net
Modified: trunk/packages/perlprimer/trunk/debian/copyright
===================================================================
--- trunk/packages/perlprimer/trunk/debian/copyright 2008-12-20 18:02:53 UTC (rev 2825)
+++ trunk/packages/perlprimer/trunk/debian/copyright 2008-12-21 13:07:10 UTC (rev 2826)
@@ -1,28 +1,10 @@
-Perlprimer was downloaded from http://perlprimer.sourceforge.net
+Format-Specification: http://wiki.debian.org/Proposals/CopyrightFormat?action=recall&rev=419
+Upstream-Name: PerlPrimer
+Upstream-Maintainer: Owen Marshall <owenjm at users.sourceforge.net>
+Upstream-Source: http://downloads.sourceforge.net/perlprimer/perlprimer-1.1.16.tar.bz2
-Files: debian/*
-Copyright: © 2005 Steffen Moeller <steffen_moeller at gmx.de>
-License: unknown
-Copyright: © 2006-2008 Charles Plessy <plessy at debian.org>
-License: as if in public domain.
-
-Files: gcg.603
-Copyright: © 2006 Dr. Richard J. Roberts
-License: unknown
- This file is from REBASE version 603.
-.
- REBASE, the Restriction Enzyme Database
- Dr. R.J. Roberts and D. Macelis
- rebase.neb.com
-.
- "REBASE is free to its users and they may use the data however they'd like,
- but when this use involves repackaging the data and redistribututing it, the
- common courtesy we always provide one another is to credit the source of this
- data." (Private communication to C. Plessy)
-
-
Files: *
-Copyright: © 2003-2006 Owen Marshall <owenjm at users.sourceforge.net>
+Copyright: © 2003-2008 Owen Marshall <owenjm at users.sourceforge.net>
License: GPL-2+
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
@@ -37,6 +19,25 @@
You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+X-Comment: On Debian systems, the complete text of the GNU General Public
+ License can be found in `/usr/share/common-licenses/GPL'.
+
+Files: gcg.603
+Copyright: © 2006 Dr. Richard J. Roberts
+License: unknown
+ This file is from REBASE version 603.
.
- On Debian systems, the complete text of the GNU General Public License can be
- found in `/usr/share/common-licenses/GPL'.
+ REBASE, the Restriction Enzyme Database
+ Dr. R.J. Roberts and D. Macelis
+ rebase.neb.com
+.
+ "REBASE is free to its users and they may use the data however they'd like,
+ but when this use involves repackaging the data and redistribututing it, the
+ common courtesy we always provide one another is to credit the source of this
+ data." (Private communication to C. Plessy)
+
+Files: debian/*
+Copyright: © 2005 Steffen Moeller <steffen_moeller at gmx.de>
+License: unknown
+Copyright: © 2006-2008 Charles Plessy <plessy at debian.org>
+License: as if in public domain.
Modified: trunk/packages/perlprimer/trunk/debian/perlprimer.docs
===================================================================
--- trunk/packages/perlprimer/trunk/debian/perlprimer.docs 2008-12-20 18:02:53 UTC (rev 2825)
+++ trunk/packages/perlprimer/trunk/debian/perlprimer.docs 2008-12-21 13:07:10 UTC (rev 2826)
@@ -1,2 +1,3 @@
todo
-ReadMe.txt
+ReadMe
+debian/reference
Added: trunk/packages/perlprimer/trunk/debian/reference
===================================================================
--- trunk/packages/perlprimer/trunk/debian/reference (rev 0)
+++ trunk/packages/perlprimer/trunk/debian/reference 2008-12-21 13:07:10 UTC (rev 2826)
@@ -0,0 +1,12 @@
+ at article{OwenJ. Marshall10122004,
+author = {Marshall, Owen J.},
+title = {{PerlPrimer: cross-platform, graphical primer design for standard, bisulphite and real-time PCR}},
+journal = {Bioinformatics},
+volume = {20},
+number = {15},
+pages = {2471-2472},
+doi = {10.1093/bioinformatics/bth254},
+year = {2004},
+URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/15/2471},
+eprint = {http://bioinformatics.oxfordjournals.org/cgi/reprint/20/15/2471.pdf}
+}
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