[med-svn] r2863 - trunk/packages/last-align/trunk/debian

[plessy at alioth.debian.org]

Author: plessy
Date: 2008-12-28 12:36:12 +0000 (Sun, 28 Dec 2008)
New Revision: 2863

Modified:
   trunk/packages/last-align/trunk/debian/changelog
   trunk/packages/last-align/trunk/debian/last-align.doc-base.last-align-seeds
Log:
New upstream release.


Modified: trunk/packages/last-align/trunk/debian/changelog
===================================================================
--- trunk/packages/last-align/trunk/debian/changelog	2008-12-28 12:10:34 UTC (rev 2862)
+++ trunk/packages/last-align/trunk/debian/changelog	2008-12-28 12:36:12 UTC (rev 2863)
@@ -1,3 +1,19 @@
+last-align (37-1) unstable; urgency=low
+
+  * New upstream release. 
+    - Updated the documentation, including a table of optimal spaced seeds.
+    - Made lastdb bucket-making code slightly simpler & faster.
+    - Enabled reading & writing of huge files (at least on one system with
+      Linux-2.6.13/x86_64/gcc-4.0.2).
+    - Made lastdb radix sort a bit faster, with the oracle array trick.
+    - Allowed the mismatch score to be zero, due to a request.
+    - Made gapped extension faster for short sequences (e.g. tag mapping).
+    - Bugfix: the sequence names weren't printed correctly for
+      match-counting output (-j 0).
+    - Fixed compiler warnings with gcc 4.3.
+
+ -- Charles Plessy <plessy at debian.org>  Sun, 28 Dec 2008 12:49:05 +0100
+
 last-align (31-1) unstable; urgency=low
 
   * Initial release (Closes: #498562)

Modified: trunk/packages/last-align/trunk/debian/last-align.doc-base.last-align-seeds
===================================================================
--- trunk/packages/last-align/trunk/debian/last-align.doc-base.last-align-seeds	2008-12-28 12:10:34 UTC (rev 2862)
+++ trunk/packages/last-align/trunk/debian/last-align.doc-base.last-align-seeds	2008-12-28 12:36:12 UTC (rev 2863)
@@ -6,4 +6,4 @@
 Section: Science/Biology
 
 Format: text
-Files: /usr/share/doc/last-align/tag-seeds.txt
+Files: /usr/share/doc/last-align/tag-seeds.txt.gz