[med-svn] r1410 - in trunk/packages/clustalx/trunk: . debian

smoe-guest at alioth.debian.org smoe-guest at alioth.debian.org
Sun Feb 17 15:48:02 UTC 2008 

Author: smoe-guest
Date: 2008-02-17 15:48:01 +0000 (Sun, 17 Feb 2008)
New Revision: 1410

Added:
   trunk/packages/clustalx/trunk/debian/clustalx.1
Removed:
   trunk/packages/clustalx/trunk/clustalx.1
Modified:
   trunk/packages/clustalx/trunk/debian/changelog
   trunk/packages/clustalx/trunk/debian/clustalx.desktop
   trunk/packages/clustalx/trunk/debian/clustalx.docs
   trunk/packages/clustalx/trunk/debian/clustalx.manpages
   trunk/packages/clustalx/trunk/debian/copyright
   trunk/packages/clustalx/trunk/debian/rules
   trunk/packages/clustalx/trunk/debian/watch
Log:
Hey, this seems ready to upload! Comments?


Deleted: trunk/packages/clustalx/trunk/clustalx.1
===================================================================
--- trunk/packages/clustalx/trunk/clustalx.1	2008-02-17 14:50:22 UTC (rev 1409)
+++ trunk/packages/clustalx/trunk/clustalx.1	2008-02-17 15:48:01 UTC (rev 1410)
@@ -1,38 +0,0 @@
-.TH CLUSTALW 1 "2003 July 1" "Manual for clustalw"
-.SH NAME
-clustalw \- a multiple sequence alignment program
-
-.SH SYNOPSIS
-.B clustalw
-.I "[options]"
-.SH "DESCRIPTION"
-This manual page documents briefly the
-.BR clustalx
-command.
-This manual page was written for the Debian GNU/Linux distribution
-because the original program does not have a manual page.
-Instead, it has other documentation; see below.
-.PP
-.B clustalx
-is a windows interface for the ClustalW multiple sequence alignment
-program. It provides an integrated environment for performing multiple sequence
-and profile alignments and analysing the results. The sequence alignment is
-displayed in a window on the screen. A versatile coloring scheme has been
-incorporated allowing you to highlight conserved features  in the alignment.
-The pull-down menus at the top of the window allow you to select all the
-options required for traditional multiple sequence and profile alignment.
-.P
-You can cut-and-paste sequences to change the order of the alignment; you can
-select a subset of sequences to be aligned; you can select a sub-range of the
-alignment to be realigned and inserted back into the original alignment.
-.P
-Alignment quality analysis can be performed and low-scoring segments or
-exceptional residues can be highlighted.
-
-.SH "SEE ALSO"
-Files in /usr/share/doc/clustalx contain a lot
-of details. The Web page <http://www-igbmc.u-strasbg.fr/BioInfo/ClustalW/>
-is also helpful.
-.SH AUTHOR
-This manual page was written by Andreas Tille <tille at debian.org>,
-for the Debian GNU/Linux system (but may be used by others).

Modified: trunk/packages/clustalx/trunk/debian/changelog
===================================================================
--- trunk/packages/clustalx/trunk/debian/changelog	2008-02-17 14:50:22 UTC (rev 1409)
+++ trunk/packages/clustalx/trunk/debian/changelog	2008-02-17 15:48:01 UTC (rev 1410)
@@ -1,3 +1,15 @@
+clustalx (2.0.1-1) unstable; urgency=low
+
+  [ Steffen Moeller ]
+  * New upstream release.
+  * Updated watch file.
+  * Removed LICENSE from debian/clustalx.docs
+  * rename to clustalx seems no longer required in debian/rules
+  * moved clustalx.1 into debian folder (eases working with svn-buildpackage)
+  * added German translation to desktop file
+
+ -- Steffen Moeller <moeller at debian.org>  Sun, 17 Feb 2008 13:16:09 +0100
+
 clustalx (2.0-1) UNRELEASED; urgency=low
 
   * New upstream release:

Copied: trunk/packages/clustalx/trunk/debian/clustalx.1 (from rev 1399, trunk/packages/clustalx/trunk/clustalx.1)
===================================================================
--- trunk/packages/clustalx/trunk/debian/clustalx.1	                        (rev 0)
+++ trunk/packages/clustalx/trunk/debian/clustalx.1	2008-02-17 15:48:01 UTC (rev 1410)
@@ -0,0 +1,38 @@
+.TH CLUSTALW 1 "2003 July 1" "Manual for clustalw"
+.SH NAME
+clustalw \- a multiple sequence alignment program
+
+.SH SYNOPSIS
+.B clustalw
+.I "[options]"
+.SH "DESCRIPTION"
+This manual page documents briefly the
+.BR clustalx
+command.
+This manual page was written for the Debian GNU/Linux distribution
+because the original program does not have a manual page.
+Instead, it has other documentation; see below.
+.PP
+.B clustalx
+is a windows interface for the ClustalW multiple sequence alignment
+program. It provides an integrated environment for performing multiple sequence
+and profile alignments and analysing the results. The sequence alignment is
+displayed in a window on the screen. A versatile coloring scheme has been
+incorporated allowing you to highlight conserved features  in the alignment.
+The pull-down menus at the top of the window allow you to select all the
+options required for traditional multiple sequence and profile alignment.
+.P
+You can cut-and-paste sequences to change the order of the alignment; you can
+select a subset of sequences to be aligned; you can select a sub-range of the
+alignment to be realigned and inserted back into the original alignment.
+.P
+Alignment quality analysis can be performed and low-scoring segments or
+exceptional residues can be highlighted.
+
+.SH "SEE ALSO"
+Files in /usr/share/doc/clustalx contain a lot
+of details. The Web page <http://www-igbmc.u-strasbg.fr/BioInfo/ClustalW/>
+is also helpful.
+.SH AUTHOR
+This manual page was written by Andreas Tille <tille at debian.org>,
+for the Debian GNU/Linux system (but may be used by others).

Modified: trunk/packages/clustalx/trunk/debian/clustalx.desktop
===================================================================
--- trunk/packages/clustalx/trunk/debian/clustalx.desktop	2008-02-17 14:50:22 UTC (rev 1409)
+++ trunk/packages/clustalx/trunk/debian/clustalx.desktop	2008-02-17 15:48:01 UTC (rev 1410)
@@ -5,10 +5,12 @@
 Exec=clustalx
 Name=Clustal X
 GenericName=Alignment and phylogeny
+GenericName[de]=Alignment und Phylogenie
 GenericName[en]=Alignment and phylogeny
 GenericName[fr]=Alignement et phylogénèse
 GenericName[pt_BR]=Alinhamento e filogenia
 Comment=Global multiple nucleotide or peptide sequence alignment and phyolgenetic analysis
+Comment[de]=Globales multiples Nucleotid- oder Peptid-Sequenzalignment and phylogenetische Analyse
 Comment[en]=Global multiple nucleotide or peptide sequence alignment and phylogenetic analysis
 Comment[fr]=Alignement global de séquences peptidiques ou nucléotidiques et analyse phylogénétique
 Comment[pt_BR]=Alinhamento global de sequências peptídicas ou nucleotídeos e análise filogenética

Modified: trunk/packages/clustalx/trunk/debian/clustalx.docs
===================================================================
--- trunk/packages/clustalx/trunk/debian/clustalx.docs	2008-02-17 14:50:22 UTC (rev 1409)
+++ trunk/packages/clustalx/trunk/debian/clustalx.docs	2008-02-17 15:48:01 UTC (rev 1410)
@@ -1,2 +1 @@
 README
-LICENSE

Modified: trunk/packages/clustalx/trunk/debian/clustalx.manpages
===================================================================
--- trunk/packages/clustalx/trunk/debian/clustalx.manpages	2008-02-17 14:50:22 UTC (rev 1409)
+++ trunk/packages/clustalx/trunk/debian/clustalx.manpages	2008-02-17 15:48:01 UTC (rev 1410)
@@ -1 +1 @@
-clustalx.1
+debian/clustalx.1

Modified: trunk/packages/clustalx/trunk/debian/copyright
===================================================================
--- trunk/packages/clustalx/trunk/debian/copyright	2008-02-17 14:50:22 UTC (rev 1409)
+++ trunk/packages/clustalx/trunk/debian/copyright	2008-02-17 15:48:01 UTC (rev 1410)
@@ -9,7 +9,7 @@
            © 2001 Dr. Guenter Bechly <gbechly at debian.org>
            © 2001 Adrian Bunk <bunk at fs.tum.de>
 	   © 2001-2002 Andreas Tille <tille at debian.org>
-	   © 2003-2007 Steffen Möller <moeller at debian.org>
+	   © 2003-2008 Steffen Möller <moeller at debian.org>
 	   © 2006 Kai Hendry <hendry at iki.fi>
 	   © 2007 Nelson A. de Oliveira <naoliv at debian.org>
 	   © 2007-2008 Charles Plessy <charles-debian-nospam at plessy.org>
@@ -17,9 +17,9 @@
  The licence of the earlier works was never stated. Some works have been
  obsoleted by release of version 2.0 — the lesstif migration for instance —
  but authors are left in the list of copyright holders by courtesy. The work
- of Charles Plessy can be treated as if it were public domain.
+ of Charles Plessy and Steffen Möller can be treated as if it were public domain.
 
-Files: clustalx.1
+Files: debian/clustalx.1
 Copyright: © 1998-1999 Stephane Bortzmeyer <bortzmeyer at debian.org>
 Licence: Unknown
 

Modified: trunk/packages/clustalx/trunk/debian/rules
===================================================================
--- trunk/packages/clustalx/trunk/debian/rules	2008-02-17 14:50:22 UTC (rev 1409)
+++ trunk/packages/clustalx/trunk/debian/rules	2008-02-17 15:48:01 UTC (rev 1410)
@@ -7,7 +7,8 @@
 	dh_testdir
 	qmake-qt4
 	$(MAKE)
-	mv clustalQtcurrent clustalx
+	# no longer required?
+	#mv clustalQtcurrent clustalx
 	touch build-stamp
 
 clean:

Modified: trunk/packages/clustalx/trunk/debian/watch
===================================================================
--- trunk/packages/clustalx/trunk/debian/watch	2008-02-17 14:50:22 UTC (rev 1409)
+++ trunk/packages/clustalx/trunk/debian/watch	2008-02-17 15:48:01 UTC (rev 1410)
@@ -1,2 +1,2 @@
 version=3
-ftp://ftp.ebi.ac.uk/pub/software/clustalw2/clustalx-src-([\d\.]+).zip
+ftp://ftp.ebi.ac.uk/pub/software/clustalw2/clustalx-(.*)-src\.tar\.gz

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