[med-svn] r1121 - trunk/packages/seaview/trunk/debian

[charles-guest at alioth.debian.org]

Author: charles-guest
Date: 2008-01-12 06:34:38 +0000 (Sat, 12 Jan 2008)
New Revision: 1121

Added:
   trunk/packages/seaview/trunk/debian/seaview.mime
   trunk/packages/seaview/trunk/debian/seaview.sharedmimeinfo
Modified:
   trunk/packages/seaview/trunk/debian/changelog
   trunk/packages/seaview/trunk/debian/rules
   trunk/packages/seaview/trunk/debian/seaview.desktop
Log:
associating .aln files with seaview through text/x-clustalw-alignment

Modified: trunk/packages/seaview/trunk/debian/changelog
===================================================================
--- trunk/packages/seaview/trunk/debian/changelog	2008-01-12 06:28:47 UTC (rev 1120)
+++ trunk/packages/seaview/trunk/debian/changelog	2008-01-12 06:34:38 UTC (rev 1121)
@@ -1,11 +1,19 @@
 seaview (1:2.2-2) unstable; urgency=low
 
-  * debian/control: Suggests: muscle, clustalw (non-free)
-      Seaview detects if they are not present and grays
-      the corresponding option.
+  * debian/control:
+    - Suggests: muscle, clustalw (non-free). Seaview detects if they
+     are not present and grays the corresponding option.
+    - Allows the upload by Debian Maintainers.
   * debian/copyright: made machine-readable
+  * MIME support:
+    - chemical/mase is used to help users of RTKdb (see
+      http://pbil.univ-lyon1.fr/RTKdb/rtkdb_HelperAppli.php)
+    - debian/seaview.sharedmimeinfo associates .aln suffix and
+      text/x-clustalw-alignment, debian/seaview.mime and
+      debian/seaview.desktop associate seaview with this MIME type.
+    - debian/rules executes dh_installmime.
 
- -- Charles Plessy <charles-debian-nospam at plessy.org>  Sat, 24 Nov 2007 22:07:42 +0900
+ -- Charles Plessy <charles-debian-nospam at plessy.org>  Sat, 12 Jan 2008 15:30:07 +0900
 
 seaview (1:2.2-1) unstable; urgency=low
 

Modified: trunk/packages/seaview/trunk/debian/rules
===================================================================
--- trunk/packages/seaview/trunk/debian/rules	2008-01-12 06:28:47 UTC (rev 1120)
+++ trunk/packages/seaview/trunk/debian/rules	2008-01-12 06:34:38 UTC (rev 1121)
@@ -53,6 +53,7 @@
 	dh_installexamples debian/examples/* protein.mase
 	dh_installmenu
 	dh_desktop
+	dh_installmime
 	dh_installman debian/seaview.1
 	dh_strip
 	dh_compress

Modified: trunk/packages/seaview/trunk/debian/seaview.desktop
===================================================================
--- trunk/packages/seaview/trunk/debian/seaview.desktop	2008-01-12 06:28:47 UTC (rev 1120)
+++ trunk/packages/seaview/trunk/debian/seaview.desktop	2008-01-12 06:34:38 UTC (rev 1121)
@@ -5,7 +5,7 @@
 Version=1.0
 Terminal=false
 Icon=seaview
-Exec=seaview
+Exec=seaview %f
 Name=SeaView
 GenericName=Multiple sequence alignment editor
 GenericName[en]=Multiple sequence alignment editor
@@ -17,4 +17,4 @@
 Comment[pt_BR]=Edita múltiplos alinhamentos de seqüências e os imprimem em formato PostScript.
 Type=Application
 Categories=Biology;Science;Education;
-
+MimeType=text/x-clustalw-alignment;chemical/mase;

Added: trunk/packages/seaview/trunk/debian/seaview.mime
===================================================================
--- trunk/packages/seaview/trunk/debian/seaview.mime	                        (rev 0)
+++ trunk/packages/seaview/trunk/debian/seaview.mime	2008-01-12 06:34:38 UTC (rev 1121)
@@ -0,0 +1,2 @@
+text/x-clustalw-alignment; seaview -save clustal '%s'; description=Clustal W multiple sequence alignment; nametemplate=%s.aln
+chemical/mase; seaview -save clustal '%s' ; description=Multiple sequence alignment ; nametemplate=%s.mase

Added: trunk/packages/seaview/trunk/debian/seaview.sharedmimeinfo
===================================================================
--- trunk/packages/seaview/trunk/debian/seaview.sharedmimeinfo	                        (rev 0)
+++ trunk/packages/seaview/trunk/debian/seaview.sharedmimeinfo	2008-01-12 06:34:38 UTC (rev 1121)
@@ -0,0 +1,11 @@
+<?xml version="1.0"?>
+<mime-info xmlns='http://www.freedesktop.org/standards/shared-mime-info'>
+  <mime-type type="text/x-clustalw-alignment">
+    <comment>Multiple sequence alignment in Clustal W format</comment>
+    <comment xml:lang="fr">Alignement multiple de séquences au format Clustal W</comment>
+    <magic priority="50">
+      <match type="string" offset="0" value="CLUSTAL"/>
+    </magic>
+    <glob pattern="*.aln"/>
+  </mime-type>
+</mime-info>