[med-svn] r1184 - trunk/packages/emboss/trunk/debian

[charles-guest at alioth.debian.org]

Author: charles-guest
Date: 2008-01-21 07:42:20 +0000 (Mon, 21 Jan 2008)
New Revision: 1184

Modified:
   trunk/packages/emboss/trunk/debian/abiview.desktop
   trunk/packages/emboss/trunk/debian/changelog
   trunk/packages/emboss/trunk/debian/emboss.mime
   trunk/packages/emboss/trunk/debian/emboss.sharedmimeinfo
Log:
swiching to application/vnd.appliedbiosystems.abif and defining a command for inline display.

Modified: trunk/packages/emboss/trunk/debian/abiview.desktop
===================================================================
--- trunk/packages/emboss/trunk/debian/abiview.desktop	2008-01-21 02:58:43 UTC (rev 1183)
+++ trunk/packages/emboss/trunk/debian/abiview.desktop	2008-01-21 07:42:20 UTC (rev 1184)
@@ -2,7 +2,7 @@
 Version=1.0
 Terminal=false
 #Icon=abiview
-Exec=abiview -outseq /dev/null -graph x11  %f
+Exec=abiview -outseq /dev/null -graph x11 %f
 Name=abiview
 GenericName=Chromatogram viewer
 GenericName[en]=Chromatogram viewer
@@ -12,5 +12,5 @@
 Comment[fr]=Affiche les chromatogrammes au format ABIF (Applied Biosystems Inc.).
 Type=Application
 Categories=Biology;Science;Education;
-MimeType=application/x-dna;
+MimeType=application/vnd.appliedbiosystems.abif;
 NoDisplay=true

Modified: trunk/packages/emboss/trunk/debian/changelog
===================================================================
--- trunk/packages/emboss/trunk/debian/changelog	2008-01-21 02:58:43 UTC (rev 1183)
+++ trunk/packages/emboss/trunk/debian/changelog	2008-01-21 07:42:20 UTC (rev 1184)
@@ -1,8 +1,9 @@
 emboss (5.0.0-4) UNRELEASED; urgency=low
 
   * MIME support for chromatograms:
-    - debian/emboss.mime associates application/ab1 and application/x-dna with
-      the `abiview' program and the .ab1 suffix.
+    - debian/emboss.mime: associates application/vnd.appliedbiosystems.abif,
+      application/ab1 and application/x-dna with the `abiview' and `seqret'
+      programs and the .ab1 suffix.
     - debian/emboss.sharedmimeinfo describes the ABIF format of the .ab1 files.
     - debian/abiview.desktop associates `abiview' with chromatograms in ABIF
       format via the application/ab1 and application/x-dna formats.

Modified: trunk/packages/emboss/trunk/debian/emboss.mime
===================================================================
--- trunk/packages/emboss/trunk/debian/emboss.mime	2008-01-21 02:58:43 UTC (rev 1183)
+++ trunk/packages/emboss/trunk/debian/emboss.mime	2008-01-21 07:42:20 UTC (rev 1184)
@@ -1,2 +1,6 @@
-application/x-dna; abiview -outseq /dev/null -graph x11 '%s' ; description=ABIF Applied Biosystems Inc. chromatogram; nametemplate=%s.ab1
-application/abi1; abiview -outseq /dev/null -graph x11 '%s' ; description=ABIF Applied Biosystems Inc. chromatogram; nametemplate=%s.ab1
+application/vnd.appliedbiosystems.abif; abiview -auto '%s' ; description=ABIF Applied Biosystems Inc. chromatogram; nametemplate=%s.ab1
+application/x-dna; abiview -auto '%s' ; description=ABIF Applied Biosystems Inc. chromatogram; nametemplate=%s.ab1
+application/abi1; abiview -auto '%s' ; description=ABIF Applied Biosystems Inc. chromatogram; nametemplate=%s.ab1
+application/vnd.appliedbiosystems.abif; seqret -filter '%s' ; description=ABIF Applied Biosystems Inc. chromatogram; nametemplate=%s.ab1 ; copiousoutput
+application/x-dna; seqret -filter '%s' ; description=ABIF Applied Biosystems Inc. chromatogram; nametemplate=%s.ab1 ; copiousoutput
+application/abi1; seqret -filter '%s' ; description=ABIF Applied Biosystems Inc. chromatogram; nametemplate=%s.ab1 ; copiousoutput

Modified: trunk/packages/emboss/trunk/debian/emboss.sharedmimeinfo
===================================================================
--- trunk/packages/emboss/trunk/debian/emboss.sharedmimeinfo	2008-01-21 02:58:43 UTC (rev 1183)
+++ trunk/packages/emboss/trunk/debian/emboss.sharedmimeinfo	2008-01-21 07:42:20 UTC (rev 1184)
@@ -1,17 +1,21 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <mime-info xmlns='http://www.freedesktop.org/standards/shared-mime-info'>
-  <mime-type type="application/x-dna">
-    <alias type="application/abi1"/>
-    <sub-class-of type="application/octet-stream"/>
-    <comment>ABIF Applied Biosystems Inc. chromatogram</comment>
-    <comment xml:lang="fr">Chromatogramme au format ABIF Applied Biosystems Inc.</comment>
-    <!-- Format spec available at http://www.appliedbiosystems.com/support/software_community/ABIF_File_Format.pdf -->
-    <!-- offset 4 and 5 stand for the version number -->
-    <magic priority="50">
-      <match type="string" offset="0"
-             value="ABIF??tdir"
-	     mask="0xffffffff0000ffffffff"/>
-    </magic>
-    <glob pattern="*.ab1"/>
-  </mime-type>
+        <mime-type type="application/vnd.appliedbiosystems.abif">
+                <alias type="application/x-dna"/>
+                <alias type="application/abi1"/>
+                <comment>ABIF chromatogram</comment>
+                <!-- alternative: ABIF format -->
+                <!-- decide yourself -->
+                <acronym>ABIF</acronym>
+                <expanded-acronym>Applied Biosystems, Inc. Format</expanded-acronym>
+                <!-- Format spec available at
+http://www.appliedbiosystems.com/support/software_community/ABIF_File_Format.pdf -->
+                <!-- offset 4 and 5 stand for the version number -->
+                <magic priority="50">
+                        <match type="string" offset="0"
+                               value="ABIF??tdir"
+                               mask="0xffffffff0000ffffffff"/>
+                </magic>
+                <glob pattern="*.ab1"/>
+        </mime-type>
 </mime-info>