[med-svn] r2191 - trunk/packages/maq/trunk/debian

[tille at alioth.debian.org]

Author: tille
Date: 2008-07-08 06:09:47 +0000 (Tue, 08 Jul 2008)
New Revision: 2191

Modified:
   trunk/packages/maq/trunk/debian/control
Log:
Try to make some standardisation in "itemized lists" in the description.  If descriptions show up on tasks pages the different styles of bullets and the different spacing looks strange.


Modified: trunk/packages/maq/trunk/debian/control
===================================================================
--- trunk/packages/maq/trunk/debian/control	2008-07-08 04:28:39 UTC (rev 2190)
+++ trunk/packages/maq/trunk/debian/control	2008-07-08 06:09:47 UTC (rev 2191)
@@ -22,24 +22,24 @@
  handle ABI SOLiD data. Maq is previously known as mapass2.
  .
  With Maq you can:
-  o     Fast align Illumina/SOLiD reads to the reference genome. With the
-        default options, one million pairs of reads can be mapped to the
-        human genome in about 10 CPU hours with less than 1G memory.
-  o     Accurately measure the error probability of the alignment of each
-        individual read.
-  o     Call the consensus genotypes, including homozygous and heterozygous
-        polymorphisms, with a Phred probabilistic quality assigned to each base.
-  o     Find short indels with paired end reads.
-  o     Accurately find large scale genomic deletions and translocations with
-        paired end reads.
-  o     Discover potential CNVs by checking read depth.
-  o     Evaluate the accuracy of raw base qualities from sequencers and help
-        to check the systematic errors.
+  - Fast align Illumina/SOLiD reads to the reference genome. With the
+    default options, one million pairs of reads can be mapped to the
+    human genome in about 10 CPU hours with less than 1G memory.
+  - Accurately measure the error probability of the alignment of each
+    individual read.
+  - Call the consensus genotypes, including homozygous and heterozygous
+    polymorphisms, with a Phred probabilistic quality assigned to each base.
+  - Find short indels with paired end reads.
+  - Accurately find large scale genomic deletions and translocations with
+    paired end reads.
+  - Discover potential CNVs by checking read depth.
+  - Evaluate the accuracy of raw base qualities from sequencers and help
+    to check the systematic errors.
  .
  However, Maq can NOT:
-  o     Do de novo assembly. (Maq can only call the consensus by mapping reads
-        to a known reference.)
-  o     Map shorts reads against themselves. (Maq can only find complete overlap
-        between reads.)
-  o     Align capillary reads or 454 reads to the reference. (Maq cannot align
-        reads longer than 63bp.)
+  - Do de novo assembly. (Maq can only call the consensus by mapping reads
+    to a known reference.)
+  - Map shorts reads against themselves. (Maq can only find complete overlap
+    between reads.)
+  - Align capillary reads or 454 reads to the reference. (Maq cannot align
+    reads longer than 63bp.)