[med-svn] r2247 - trunk/community/infrastructure/getData

[plessy at alioth.debian.org]

Author: plessy
Date: 2008-07-17 01:12:33 +0000 (Thu, 17 Jul 2008)
New Revision: 2247

Modified:
   trunk/community/infrastructure/getData/getData
Log:
Another way to get Jasper.

This downloads the zip files in
http://jaspar.genereg.net/html/DOWNLOAD/MatrixDir/. They can be indexed by the
`jaspextract' tool of EMBOSS 6.


Modified: trunk/community/infrastructure/getData/getData
===================================================================
--- trunk/community/infrastructure/getData/getData	2008-07-16 15:32:12 UTC (rev 2246)
+++ trunk/community/infrastructure/getData/getData	2008-07-17 01:12:33 UTC (rev 2247)
@@ -208,6 +208,11 @@
 		"post-download" => "unzip `find ftp.ebi.ac.uk -name '*.zip'`"
 	},
 
+	"jaspar" => {
+		name => "The high-quality transcription factor binding profile database",
+		source => "wget -r -nH -nd -l1 --no-parent -A.zip http://jaspar.genereg.net/html/DOWNLOAD/MatrixDir/",
+	},
+
 	"jaspar.core" => {
 		name => "Jaspar Core Database of transcription factor binding sites",
 		source => "wget --mirror http://jaspar.genereg.net/html/DOWNLOAD/MatrixDir/JASPAR_CORE_2008/"