[med-svn] r2287 - trunk/packages/arb/trunk/debian

[tille at alioth.debian.org]

Author: tille
Date: 2008-07-23 06:32:44 +0000 (Wed, 23 Jul 2008)
New Revision: 2287

Modified:
   trunk/packages/arb/trunk/debian/copyright
Log:
More detailed copyright statements to enable nonfree at release.debian.net to put arb on their list.


Modified: trunk/packages/arb/trunk/debian/copyright
===================================================================
--- trunk/packages/arb/trunk/debian/copyright	2008-07-23 06:13:08 UTC (rev 2286)
+++ trunk/packages/arb/trunk/debian/copyright	2008-07-23 06:32:44 UTC (rev 2287)
@@ -116,16 +116,10 @@
  Remark: After heavy discussion with the author of Phylip it
  was not possible to convince him to use a free license.
 
-Files: GDE/SUPPORT/lsadt.c
-Copyright: (C) 1983-1984 GEERT DE SOETE,
-  C version by Michael Macuikenas, University of Illinois
-  REFERENCE: DE SOETE, G. A LEAST SQUARES ALGORITHM FOR FITTING
-  ADDITIVE TREES TO PROXIMITY DATA. PSYCHOMETRIKA, 1983, 48, 621-626.
-  DE SOETE, G. ADDITIVE TREE REPRESENTATIONS OF INCOMPLETE
-  DISSIMILARITY DATA. QUALITY AND QUANTITY, 1984, 18, 387-393.
-License:       
- ALTHOUGH THIS PROGRAM HAS BEEN CAREFULLY TESTED, THE AUTHOR DISCLAIMS
- ANY RESPONSABILITY FOR POSSIBLE ERRORS.
+Files: GDE/SUPPORT/CAP2.c
+Copyright: (C) 1991   Xiaoqiu Huang
+ The distribution of the program is granted provided no charge
+ is made and the copyright notice is included.
 X-Comment: Remark from the Debian package maintainer Andreas Tille
  I was unable to find a source URL where this program which is
  claimed as external can be downloaded.
@@ -150,30 +144,30 @@
  This is not used in the binary package because it is available as
  official Debian package and has a free license (see this package).
 
-Files: GDE/RAxML/*
+Files: GDE/RAxML/[a]*
 Copyright: (C) 2004-2008 Alexandros Stamatakis, Michael Ott, Thomas Ludwig
-License:
- LEGAL DISCLAIMER
- .
- THIS SOFTWARE IS PROVIDED BY ALEXANDROS STAMATAKIS AND THE INSTITUTE OF
- COMPUTER SCIENCE, FOUNDATION FOR RESEARCH AND TECHNOLOGH HELLAS
- AND CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED
- WARRANTIES, INCLUDING, BUT  NOT LIMITED TO, THE IMPLIED WARRANTIES
- OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
- DISCLAIMED. IN NO EVENT SHALL THE AUTHOR OR CONTRIBUTORS BE
- LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY,
- OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
- PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA,
- OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON
- ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
- OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF  THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
- POSSIBILITY OF SUCH DAMAGE. NO COMMERCIAL USE OR COMMERCIAL
- REDISTRIBUTION OF THIS SOFTWARE IS AUTHORIZED. ANY PUBLICATION
- BASED ON THE USE OF THIS SOFTWARE MUST EXPLICITLY ACKNOWLEDGE ITS
- USE AND SHOULD CITE THE APPROPRIATE PAPER(S) LISTED IN THE README
- FILE.
+License: GPL
+Comment: There is also a file GDE/RAxML/softwaredisclaimer in this directory
+ which contains some license text which might be provided in a private
+ mail or whatever from the RAxML authors to the Arb authors.  The relevance
+ of this file is completely unclear because RAxML as it can be obtained from
+ http://icwww.epfl.ch/~stamatak/index-Dateien/Page443.htm is GPLed and the
+ remaining files in this directory are neither copyrighted by the RAxML
+ authors nor do they feature a similar license statement.  This file is
+ subject for clarification by the Arb authors.
 
+Files: GDE/RAxML/[cdp]*
+Copyright: (C) 1993-2002 by the University of Washington.
+ Written by Joseph Felsenstein, Hisashi Horino, and others
+License:  Permission is granted to copy and use this program provided no
+ fee is charged for it and provided that this copyright notice is not
+ removed.
+
+Files: GDE/RAxML/[g]*
+Copyright: (C) 1987, 1993, 1994
+ The Regents of the University of California.  All rights reserved.
+License: BSD
+
 Files: GDE/TREEPUZZLE/*
 Copyright: (C) 1995-1999 Korbinian Strimmer and Arndt von Haeseler
  (C) 1999-2001 Heiko A. Schmidt, Korbinian Strimmer,Martin Vingron,