[med-svn] r2333 - in trunk/packages/R: . r-cran-rocr r-cran-rocr/trunk r-cran-rocr/trunk/debian

smoe-guest at alioth.debian.org smoe-guest at alioth.debian.org
Sat Jul 26 22:55:16 UTC 2008 

Author: smoe-guest
Date: 2008-07-26 22:55:14 +0000 (Sat, 26 Jul 2008)
New Revision: 2333

Added:
   trunk/packages/R/r-cran-rocr/
   trunk/packages/R/r-cran-rocr/trunk/
   trunk/packages/R/r-cran-rocr/trunk/debian/
   trunk/packages/R/r-cran-rocr/trunk/debian/changelog
   trunk/packages/R/r-cran-rocr/trunk/debian/compat
   trunk/packages/R/r-cran-rocr/trunk/debian/control
   trunk/packages/R/r-cran-rocr/trunk/debian/copyright
   trunk/packages/R/r-cran-rocr/trunk/debian/rules
   trunk/packages/R/r-cran-rocr/trunk/debian/watch
Log:
Uploaded initial release.



Property changes on: trunk/packages/R/r-cran-rocr/trunk/debian
___________________________________________________________________
Name: mergeWithUpstream
   + 1

Added: trunk/packages/R/r-cran-rocr/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-cran-rocr/trunk/debian/changelog	                        (rev 0)
+++ trunk/packages/R/r-cran-rocr/trunk/debian/changelog	2008-07-26 22:55:14 UTC (rev 2333)
@@ -0,0 +1,5 @@
+r-cran-rocr (1.0-2-1) unstable; urgency=low
+
+  * Initial release (closes: #492524).
+
+ -- Steffen Moeller <moeller at debian.org>  Sun, 27 Jul 2008 00:34:06 +0200

Added: trunk/packages/R/r-cran-rocr/trunk/debian/compat
===================================================================
--- trunk/packages/R/r-cran-rocr/trunk/debian/compat	                        (rev 0)
+++ trunk/packages/R/r-cran-rocr/trunk/debian/compat	2008-07-26 22:55:14 UTC (rev 2333)
@@ -0,0 +1 @@
+5

Added: trunk/packages/R/r-cran-rocr/trunk/debian/control
===================================================================
--- trunk/packages/R/r-cran-rocr/trunk/debian/control	                        (rev 0)
+++ trunk/packages/R/r-cran-rocr/trunk/debian/control	2008-07-26 22:55:14 UTC (rev 2333)
@@ -0,0 +1,48 @@
+Source: r-cran-rocr
+Section: math
+Priority: optional
+Maintainer: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Steffen Moeller <moeller at debian.org>, Dirk Eddelbuettel <edd at debian.org>
+Build-Depends: debhelper (>= 5.0.0), cdbs, r-base-dev, r-cran-gplots, r-cran-gtools, r-cran-gdata
+Standards-Version: 3.8.0
+Homepage: http://rocr.bioinf.mpi-sb.mpg.de
+
+Package: r-cran-rocr
+Architecture: all
+Depends: ${shlibs:Depends}, r-base-core, r-cran-gplots, r-cran-gtools, r-cran-gdata
+Description: GNU R package to prepare and display ROC curves
+ ROC graphs, sensitivity/specificity curves, lift charts,
+ and precision/recall plots are popular examples of trade-off
+ visualizations for specific pairs of performance measures. ROCR is a
+ flexible tool for creating cutoff-parametrized 2D performance curves
+ by freely combining two from over 25 performance measures (new
+ performance measures can be added using a standard interface).
+ Curves from different cross-validation or bootstrapping runs can be
+ averaged by different methods, and standard deviations, standard
+ errors or box plots can be used to visualize the variability across
+ the runs. The parametrization can be visualized by printing cutoff
+ values at the corresponding curve positions, or by coloring the
+ curve according to cutoff. All components of a performance plot can
+ be quickly adjusted using a flexible parameter dispatching
+ mechanism. Despite its flexibility, ROCR is easy to use, with only
+ three commands and reasonable default values for all optional
+ parameters.
+ .
+ ROCR features: ROC curves, precision/recall plots, lift charts, cost
+ curves, custom curves by freely selecting one performance measure for the
+ x axis and one for the y axis, handling of data from cross-validation
+ or bootstrapping, curve averaging (vertically, horizontally, or by
+ threshold), standard error bars, box plots, curves that are color-coded
+ by cutoff, printing threshold values on the curve, tight integration
+ with Rs plotting facilities (making it easy to adjust plots or to combine
+ multiple plots), fully customizable, easy to use (only 3 commands).
+ .
+ Performance measures that ROCR knows: Accuracy, error rate, true
+ positive rate, false positive rate, true negative rate, false negative
+ rate, sensitivity, specificity, recall, positive predictive value,
+ negative predictive value, precision, fallout, miss, phi correlation
+ coefficient, Matthews correlation coefficient, mutual information, chi
+ square statistic, odds ratio, lift value, precision/recall F measure,
+ ROC convex hull, area under the ROC curve, precision/recall break-even
+ point, calibration error, mean cross-entropy, root mean squared error,
+ SAR measure, expected cost, explicit cost.

Added: trunk/packages/R/r-cran-rocr/trunk/debian/copyright
===================================================================
--- trunk/packages/R/r-cran-rocr/trunk/debian/copyright	                        (rev 0)
+++ trunk/packages/R/r-cran-rocr/trunk/debian/copyright	2008-07-26 22:55:14 UTC (rev 2333)
@@ -0,0 +1,18 @@
+The R library ROCR was written by Tobias Sing, Oliver Sander, Niko
+Beerenwinkel, Thomas Lengauer and is maintained by Tobias Sing
+<tobias.sing at mpi-sb.mpg.de>.
+
+This package was created by Steffen Moeller <moeller at debian.org>,
+based on work for the r-cran-rodbc package of Dirk
+Eddelbuettel <edd at debian.org>.
+
+The sources were downloaded from http://cran.r-project.org/src/contrib/.
+
+The package was renamed from its upstream name 'ROCR' to 'r-cran-rocr'
+to highlight the fact that is it a package for R within the CRAN archive
+and the policy to use lower case characters for package names.
+
+Combinat is copyright 2005-6 by the authors and released under the
+GNU General Public License (GPL) version 2 or any later version.
+On a Debian GNU/Linux system, the GPL license is included in the file
+/usr/share/common-licenses/GPL.

Added: trunk/packages/R/r-cran-rocr/trunk/debian/rules
===================================================================
--- trunk/packages/R/r-cran-rocr/trunk/debian/rules	                        (rev 0)
+++ trunk/packages/R/r-cran-rocr/trunk/debian/rules	2008-07-26 22:55:14 UTC (rev 2333)
@@ -0,0 +1,6 @@
+#!/usr/bin/make -f
+# 							-*- makefile -*-
+# debian/rules file for the Debian/GNU Linux r-cran-qtl package
+# Copyright 2003-2006 by Dirk Eddelbuettel <edd at debian.org>
+
+include /usr/share/R/debian/r-cran.mk


Property changes on: trunk/packages/R/r-cran-rocr/trunk/debian/rules
___________________________________________________________________
Name: svn:executable
   + *

Added: trunk/packages/R/r-cran-rocr/trunk/debian/watch
===================================================================
--- trunk/packages/R/r-cran-rocr/trunk/debian/watch	                        (rev 0)
+++ trunk/packages/R/r-cran-rocr/trunk/debian/watch	2008-07-26 22:55:14 UTC (rev 2333)
@@ -0,0 +1,3 @@
+version=3
+http://cran.r-project.org/src/contrib/rocr_([-0-9\.]*)\.tar\.gz
+

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