[med-svn] r2338 - trunk/packages/mgltools/sff/trunk/debian
smoe-guest at alioth.debian.org
smoe-guest at alioth.debian.org
Sun Jul 27 12:48:48 UTC 2008
Author: smoe-guest
Date: 2008-07-27 12:48:47 +0000 (Sun, 27 Jul 2008)
New Revision: 2338
Modified:
trunk/packages/mgltools/sff/trunk/debian/control
trunk/packages/mgltools/sff/trunk/debian/copyright
Log:
Should also be fine.
Modified: trunk/packages/mgltools/sff/trunk/debian/control
===================================================================
--- trunk/packages/mgltools/sff/trunk/debian/control 2008-07-27 12:40:19 UTC (rev 2337)
+++ trunk/packages/mgltools/sff/trunk/debian/control 2008-07-27 12:48:47 UTC (rev 2338)
@@ -22,4 +22,9 @@
their docking of chemical compounds.
.
It implements an Amber force field with an interface to a molecular
- dynamics engine.
+ dynamics engine. SFF stands for simple force field. It is a C
+ implementation of the amber force field made by Tom Macke and David Case.
+ .
+ This package exposes a wrapped version of the prm structure which holds the
+ Amber parameters needed for an Amber calculation. It also exposes the mme
+ and md functions to perform molecular mechanics and dynamics respectively.
Modified: trunk/packages/mgltools/sff/trunk/debian/copyright
===================================================================
--- trunk/packages/mgltools/sff/trunk/debian/copyright 2008-07-27 12:40:19 UTC (rev 2337)
+++ trunk/packages/mgltools/sff/trunk/debian/copyright 2008-07-27 12:48:47 UTC (rev 2338)
@@ -1,46 +1,122 @@
This package was debianized by Steffen Moeller <moeller at debian.org> on
-Thu, 20 Dec 2007 16:27:31 +0100.
+Thu, 10 Jul 2008 00:03:24 +0200
It was downloaded from http://mgltools.scripps.edu
Upstream Authors:
- Molecular Graphics Laboratory <mgltools at scripps.edu>
-Copyright:
+ The Simple Force Field library is authored by
- THE SCRIPPS RESEARCH INSTITUTE, <sanner at scripps.edu>
+ Armin Widmer
+ Tom Macke
+ David A. Case
+ Bill Ross
+ and provided with python interface by developers at the
+
+ Molecular Graphics Laboratory <mgltools at scripps.edu>
+
+ led by
+
+ Michael F. Sanner <sanner at scripps.edu>
+
+ with contributions by
+
+ Ruth Huey <rhuey at scripps.edu>
+ Garrett M. Morris <garrett at scripps.edu>
+ David S. Goodsell
+ Arthur J. Olson
+ Sargis Dallakyan <sargis at scripps.edu>
+ Rodney Harris
+ William Lindstrom
+ Konrad Hinsen <hinsen at cnrs-orleans.fr>
+ John E. Grayson
+ Sowjanya Karnati
+ Sandro Cosconati
+ Daniel Stoffler
+ Michael F. Sanner <sanner at scripps.edu>
+
+Copyright 1994-2008
+
+ The respective authors and the Scripps Research Institute
+ Michael Sanner <sanner at scripps.edu>
+
License:
- PLEASE READ THIS DOCUMENT CAREFULLY. IF YOU AGREE WITH THE TERMS
- AND CONDITIONS OF THIS LICENSE AGREEMENT, AND WISH TO RECEIVE AND
- USE THIS SOFTWARE.
+All files distributed or redistributed in this package are subject
+to the here presented license, regardless of the information
+that is explicitly stated or omitted in the respective files
+themselves. The original copyright holders have made respective
+agreements regarding this redistribution.
- 1. Grant Of Limited License; Software Use Restrictions. The programs
- received by you will be used only for NON COMMERCIAL SCIENTIFIC
- RESEARCH. This license is issued to you as an individual. For
- institution wide use or commercial use of the software you will
- have to follow the official registration procedure. To do so you can
- contact us by e-mail (sanner at scripps.edu), by mail (Michel Sanner,
- TSRI, Molecular Biology Department, MB5, 10666 North Torrey Pines
- Road, 92037 La Jolla) or by fax (858) 784-2860.
- Some of the components have their own licensing specificities
- that are described in the README file that is generated when you
- download the software. We request that you read the content of
- this file and comply to the requirements.
- 2. Copying Restrictions. You will not sell or otherwise transfer these
- programs or derivatives to any other party, whether with or
- without consideration, for any purpose.
- 3. Ownership of Software. You will not obtain, and will not attempt to
- obtain copyright coverage thereon without the express purpose
- written consent of The Scripps Research Institute.
- 4. Limitation Of Liability. You will hold harmless from all or any expenses
- you may incur as a result of or arising from your use, direct or indirect,
- of these materials. You understand that no other right or license
- to this program or its derivatives is granted or implied as a
- result of our transmission of same to you.
+ 1. Grant Of Limited License; Software Use Restrictions. The programs
+ received by you will be used only for NON COMMERCIAL purposes.
+ This license is issued to you as an individual.
-The Debian packaging is (C) 2007, Steffen Moeller <moeller at debian.org> and
-is licensed under the GPL, see `/usr/share/common-licenses/GPL'.
+ For COMMERCIAL use done with the software please contact Michel F.
+ Sanner for details about commercial usage license agreements.
+
+ For any question regarding license agreements, please contact
+ Michel Sanner:
+ TSRI, Molecular Biology Department, TCP 26,
+ 10550 North Torrey Pines Road, La Jolla, CA 92037
+ sanner at scripps.edu
+ tel (858) 784-7742
+ fax (858) 784-2341
+
+ 2. COMMERCIAL USAGE is defined as revenues generating activities. These
+ include using this software for consulting activities and selling
+ applications built on top of, or using this software. Scientific
+ research in an academic environment and teaching are considered
+ NON COMMERCIAL.
+
+ 3. Copying Restrictions. You will not sell or otherwise distribute commercially
+ these programs or derivatives to any other party, whether with or without
+ consideration.
+
+ 4. Ownership of Software. You will not obtain, and will not attempt to
+ obtain copyright coverage thereon without the express purpose written
+ consent of The Scripps Research Institute and Dr. Sanner.
+
+ 5. IN NO EVENT SHALL THE AUTHORS OR DISTRIBUTORS BE LIABLE TO ANY PARTY
+ FOR DIRECT, INDIRECT, SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES
+ ARISING OUT OF THE USE OF THIS SOFTWARE, ITS DOCUMENTATION, OR ANY
+ DERIVATIVES THEREOF, EVEN IF THE AUTHORS HAVE BEEN ADVISED OF THE
+ POSSIBILITY OF SUCH DAMAGE.
+
+ 6. THE AUTHORS AND DISTRIBUTORS SPECIFICALLY DISCLAIM ANY WARRANTIES,
+ INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY,
+ FITNESS FOR A PARTICULAR PURPOSE, AND NON-INFRINGEMENT. THIS SOFTWARE
+ IS PROVIDED ON AN "AS IS" BASIS, AND THE AUTHORS AND DISTRIBUTORS HAVE
+ NO OBLIGATION TO PROVIDE MAINTENANCE, SUPPORT, UPDATES, ENHANCEMENTS, OR
+ MODIFICATIONS.
+
+The Simple Force Field (SFF) library is distributed under the following terms
+
+
+ The authors hereby grant permission to use, copy, modify, and re-distribute
+ this software and its documentation for any purpose, provided
+ that existing copyright notices are retained in all copies and that this
+ notice is included verbatim in any distributions. No written agreement,
+ license, or royalty fee is required for any of the authorized uses.
+ Modifications to this software may be distributed provided that
+ the nature of the modifications are clearly indicated.
+
+ IN NO EVENT SHALL THE AUTHORS OR DISTRIBUTORS BE LIABLE TO ANY PARTY
+ FOR DIRECT, INDIRECT, SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES
+ ARISING OUT OF THE USE OF THIS SOFTWARE, ITS DOCUMENTATION, OR ANY
+ DERIVATIVES THEREOF, EVEN IF THE AUTHORS HAVE BEEN ADVISED OF THE
+ POSSIBILITY OF SUCH DAMAGE.
+
+ THE AUTHORS AND DISTRIBUTORS SPECIFICALLY DISCLAIM ANY WARRANTIES,
+ INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY,
+ FITNESS FOR A PARTICULAR PURPOSE, AND NON-INFRINGEMENT. THIS SOFTWARE
+ IS PROVIDED ON AN "AS IS" BASIS, AND THE AUTHORS AND DISTRIBUTORS HAVE
+ NO OBLIGATION TO PROVIDE MAINTENANCE, SUPPORT, UPDATES, ENHANCEMENTS, OR
+ MODIFICATIONS.
+
+
+The Debian packaging is (C) 2007-2008, Steffen Moeller <moeller at debian.org> and
+is licensed under the GPL, see '/usr/share/common-licenses/GPL'.
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