[med-svn] r2366 - in trunk/packages/maq/trunk/debian: . patches

[plessy at alioth.debian.org]

Author: plessy
Date: 2008-07-30 12:52:29 +0000 (Wed, 30 Jul 2008)
New Revision: 2366

Removed:
   trunk/packages/maq/trunk/debian/patches/20_perl_path.patch
Modified:
   trunk/packages/maq/trunk/debian/README.Debian
   trunk/packages/maq/trunk/debian/changelog
   trunk/packages/maq/trunk/debian/control
   trunk/packages/maq/trunk/debian/copyright
   trunk/packages/maq/trunk/debian/patches/series
Log:
New upstream release and typo correction.


Modified: trunk/packages/maq/trunk/debian/README.Debian
===================================================================
--- trunk/packages/maq/trunk/debian/README.Debian	2008-07-30 01:30:38 UTC (rev 2365)
+++ trunk/packages/maq/trunk/debian/README.Debian	2008-07-30 12:52:29 UTC (rev 2366)
@@ -1,6 +1,7 @@
 maq for Debian
 --------------
 
-This package fits nicely into the Debian Med biology section.
+The -m64 option has been disabled to build maq on all Debian platforms. Please
+report a bug of severity grave if it impairs your work.
 
  -- Charles Plessy <plessy at debian.org>  Mon, 07 Jul 2008 23:37:51 +0900

Modified: trunk/packages/maq/trunk/debian/changelog
===================================================================
--- trunk/packages/maq/trunk/debian/changelog	2008-07-30 01:30:38 UTC (rev 2365)
+++ trunk/packages/maq/trunk/debian/changelog	2008-07-30 12:52:29 UTC (rev 2366)
@@ -1,3 +1,16 @@
+maq (0.6.8-1) UNRELEASED; urgency=low
+
+  * New upstream release.
+    - New features for the 1000 genome project.
+    - Error dependency coefficient reduced from 0.93 to 0.85.
+    - Added mapvalidate command.
+    - Support generating GLF format.
+    - The mapcheck command can optionally dump additional information.
+  * debian/patches/20_perl_path.patch deleted because accepted upstream.
+  * debian/control: typo corrected in short description (Closes: #492979)
+
+ -- Charles Plessy <plessy at debian.org>  Wed, 30 Jul 2008 21:48:56 +0900
+
 maq (0.6.7-1) unstable; urgency=low
 
   [ Charles Plessy ]

Modified: trunk/packages/maq/trunk/debian/control
===================================================================
--- trunk/packages/maq/trunk/debian/control	2008-07-30 01:30:38 UTC (rev 2365)
+++ trunk/packages/maq/trunk/debian/control	2008-07-30 12:52:29 UTC (rev 2366)
@@ -14,7 +14,7 @@
 Package: maq
 Architecture: any
 Depends: ${shlibs:Depends}, ${misc:Depends}
-Description: maps short fixed-legth polymporphic DNA sequence reads to reference sequences
+Description: maps short fixed-legth polymorphic DNA sequence reads to reference sequences
  Maq (short for Mapping and Assembly with Quality) builds mapping assemblies
  from short reads generated by the next-generation sequencing machines. It is
  particularly designed for Illumina-Solexa 1G Genetic Analyzer, and has a

Modified: trunk/packages/maq/trunk/debian/copyright
===================================================================
--- trunk/packages/maq/trunk/debian/copyright	2008-07-30 01:30:38 UTC (rev 2365)
+++ trunk/packages/maq/trunk/debian/copyright	2008-07-30 12:52:29 UTC (rev 2366)
@@ -3,7 +3,7 @@
 Packaged-By: Charles Plessy <plessy at debian.org>,
  Andreas Tille <tille at debian.org>
 Packaged-Date: Mon, 07 Jul 2008 23:37:51 +0900.
-Upstream-Source: http://downloads.sourceforge.net/maq/maq-0.6.7.tar.bz2
+Upstream-Source: http://downloads.sourceforge.net/maq/maq-0.6.8.tar.bz2
 
 Files: *
 License: GPL3+

Deleted: trunk/packages/maq/trunk/debian/patches/20_perl_path.patch
===================================================================
--- trunk/packages/maq/trunk/debian/patches/20_perl_path.patch	2008-07-30 01:30:38 UTC (rev 2365)
+++ trunk/packages/maq/trunk/debian/patches/20_perl_path.patch	2008-07-30 12:52:29 UTC (rev 2366)
@@ -1,9 +0,0 @@
-Forwarded: http://sourceforge.net/tracker/index.php?func=detail&aid=2013336&group_id=191815&atid=938893
---- maq-0.6.7.orig/scripts/maq_plot.pl
-+++ maq-0.6.7/scripts/maq_plot.pl
-@@ -1,4 +1,4 @@
--#!/usr/local/bin/perl -w
-+#!/usr/bin/perl -w
- 
- # Author: lh3
- 

Modified: trunk/packages/maq/trunk/debian/patches/series
===================================================================
--- trunk/packages/maq/trunk/debian/patches/series	2008-07-30 01:30:38 UTC (rev 2365)
+++ trunk/packages/maq/trunk/debian/patches/series	2008-07-30 12:52:29 UTC (rev 2366)
@@ -1,2 +1 @@
-20_perl_path.patch
 10_prevent_-64_option.patch