[med-svn] r1969 - trunk/packages/pdb2pqr/trunk/debian

[hauro-guest at alioth.debian.org]

Author: hauro-guest
Date: 2008-06-04 19:17:45 +0000 (Wed, 04 Jun 2008)
New Revision: 1969

Modified:
   trunk/packages/pdb2pqr/trunk/debian/rules
Log:
pdb2pqr: Added notes on reported upstream issues to debian/rules


Modified: trunk/packages/pdb2pqr/trunk/debian/rules
===================================================================
--- trunk/packages/pdb2pqr/trunk/debian/rules	2008-06-04 14:39:41 UTC (rev 1968)
+++ trunk/packages/pdb2pqr/trunk/debian/rules	2008-06-04 19:17:45 UTC (rev 1969)
@@ -13,15 +13,19 @@
 
 # Updating all config.{guess,sub} files because upstream ships old versions.
 # If that is resolved, we can drop the Depends: on autotools-dev again.
+# (Reported upstream, fixed in SVN, will be in the next release (>1.3.0))
 DEB_AC_AUX_DIR += $(DEB_SRCDIR)/propka
 
 binary-install/pdb2pqr::
+### BEGIN FIXES
+# (All reported upstream, fixed in SVN, will be in next release (>1.3.0))
 # Add a shebang to psize.py
 	sed -i -e '1i\#!/usr/bin/python' $(CURDIR)/debian/pdb2pqr/usr/share/pdb2pqr/src/psize.py
 # Fix !#/bin/env shebang: substitute with #!/usr/bin/python
 	sed -i -e '1c#!/usr/bin/python' $(CURDIR)/debian/pdb2pqr/usr/share/pdb2pqr/pdb2pka/inputgen_pKa.py
 # Fix minor permission problem (should not be executable)
 	chmod 0644 $(CURDIR)/debian/pdb2pqr/usr/share/pdb2pqr/pdb2pka/ligandclean/__init__.py
+### END FIXES
 # Install script wrappers
 	for app in /usr/share/pdb2pqr/pdb2pqr.py /usr/share/pdb2pqr/src/psize.py; do \
 		sed -e "s, at SCRIPT@,$${app}," debian/wrapper.sh \
@@ -33,6 +37,7 @@
 	DH_PYCENTRAL=nomove dh_pycentral -ppdb2pqr
 
 # Clean files that are not removed in upstream's "distclean" target
+# (Reported upstream, fixed in SVN, will be in next release (>1.3.0))
 clean::
 	rm -f index.html html/server.html querystatus.cgi
 	rm -f pdb2pqr.py pdb2pqr.cgi pdb2pqr-opal.cgi src/server.py