[med-svn] r2052 - trunk/packages/pdb2pqr/trunk/debian

[hauro-guest at alioth.debian.org]

Author: hauro-guest
Date: 2008-06-12 13:19:04 +0000 (Thu, 12 Jun 2008)
New Revision: 2052

Modified:
   trunk/packages/pdb2pqr/trunk/debian/README.Debian
Log:
Rewrote README.Debian


Modified: trunk/packages/pdb2pqr/trunk/debian/README.Debian
===================================================================
--- trunk/packages/pdb2pqr/trunk/debian/README.Debian	2008-06-12 12:30:21 UTC (rev 2051)
+++ trunk/packages/pdb2pqr/trunk/debian/README.Debian	2008-06-12 13:19:04 UTC (rev 2052)
@@ -1,16 +1,15 @@
-Two Debian developers have met to work the packaging of PDB2PQR for
-their favorite Linux distribution. For one, the packaging of PDB2PQR was
-stimulated by his packaging of the AutoDockTools and their dependency
-on it to visualise properties of the protein. The other uses PDB2PQR
-for his mostly day-time profession.
+PROPKA
+======
 
-The code to offer pdb2pqr as a web service was omitted. The extensions
-directory was added as a documentation.
+PDB2PQR can use PROPKA to protonate the structure it converts. If you want to
+use the propka binary as a stand-alone application, you have to install the
+"propka" package. This is not needed if you just want to run PROPKA during a
+PDB2PQR run.
 
-The adv-tests of the build process are not performed to allow the
-build-process to be executed offline. This would be required for
-compliance with the DFSG. The regular build process fetches a protein
-structure from PDB and one should instread probably better provide a patch 
-that uses a structure from the examples directory directly.
+Web Service
+===========
 
- -- Steffen Moeller and Manuel Prinz  Sat, 07 Jun 2008 22:02:05 +0200
+The Debian package of PDB2PQR currently does not provide the parts that are
+necessary to run PDB2PQR as a web service.
+
+ -- Steffen Möller and Manuel Prinz  Thu, 12 Jun 2008 15:18:01 +0200