[med-svn] r2086 - trunk/packages/altree/trunk/debian

plessy at alioth.debian.org plessy at alioth.debian.org
Sat Jun 21 08:06:31 UTC 2008 

Author: plessy
Date: 2008-06-21 08:06:30 +0000 (Sat, 21 Jun 2008)
New Revision: 2086

Added:
   trunk/packages/altree/trunk/debian/altree-examples.docs
   trunk/packages/altree/trunk/debian/altree.doc-base
   trunk/packages/altree/trunk/debian/altree.docs
Removed:
   trunk/packages/altree/trunk/debian/docs
Modified:
   trunk/packages/altree/trunk/debian/changelog
   trunk/packages/altree/trunk/debian/control
   trunk/packages/altree/trunk/debian/copyright
   trunk/packages/altree/trunk/debian/rules
Log:
New altree-example package, registration of the manual, and other QA work.

  * debian/control:
    - Checked conformance with Policy 3.8.0 (no changes needed).
    - Added a new Arch:all package, altree-examples.
  * debian/copyright:
    - Lifted to the latest version of the proposed machine-readable format.
  * manual.pdf:
    - Compression prevented by DEB_COMPRESS_EXCLUDE := .pdf in debian/rules.
    - Registered in doc-base.


Added: trunk/packages/altree/trunk/debian/altree-examples.docs
===================================================================
--- trunk/packages/altree/trunk/debian/altree-examples.docs	                        (rev 0)
+++ trunk/packages/altree/trunk/debian/altree-examples.docs	2008-06-21 08:06:30 UTC (rev 2086)
@@ -0,0 +1 @@
+test/*

Added: trunk/packages/altree/trunk/debian/altree.doc-base
===================================================================
--- trunk/packages/altree/trunk/debian/altree.doc-base	                        (rev 0)
+++ trunk/packages/altree/trunk/debian/altree.doc-base	2008-06-21 08:06:30 UTC (rev 2086)
@@ -0,0 +1,11 @@
+Document: altree
+Title: ALTree: Association and Localisation tests using haplotype phylogenetic Trees
+Author: Claire Bardel, Vincent Danjean, Pierre Darly and Emanuelle Guérin
+Abstract: This manual covers the installation and usage of ALTree. It provides a
+ reference for for the `ALTree-convert', `ALTree-add-S' and `ALTree' programs,
+ as well as explanation about the example files distributed in the
+ `altree-examples' Debian package.
+Section: Science/Biology
+
+Format: PDF
+Files: /usr/share/doc/altree/manual.pdf

Copied: trunk/packages/altree/trunk/debian/altree.docs (from rev 2085, trunk/packages/altree/trunk/debian/docs)
===================================================================
--- trunk/packages/altree/trunk/debian/altree.docs	                        (rev 0)
+++ trunk/packages/altree/trunk/debian/altree.docs	2008-06-21 08:06:30 UTC (rev 2086)
@@ -0,0 +1,2 @@
+README
+Documentation/manual.pdf

Modified: trunk/packages/altree/trunk/debian/changelog
===================================================================
--- trunk/packages/altree/trunk/debian/changelog	2008-06-21 06:40:58 UTC (rev 2085)
+++ trunk/packages/altree/trunk/debian/changelog	2008-06-21 08:06:30 UTC (rev 2086)
@@ -1,8 +1,16 @@
-altree (1.0.1-3) UNRELEASED; urgency=low
+altree (1.0.1-3) unstable; urgency=low
 
-  * debian/control: corrected the VCS information.
+  * debian/control:
+    - Corrected the VCS information.
+    - Checked conformance with Policy 3.8.0 (no changes needed).
+    - Added a new Arch:all package, altree-examples.
+  * debian/copyright:
+    - Lifted to the latest version of the proposed machine-readable format.
+  * manual.pdf:
+    - Compression prevented by DEB_COMPRESS_EXCLUDE := .pdf in debian/rules.
+    - Registered in doc-base.
 
- -- Charles Plessy <plessy at debian.org>  Fri, 20 Jun 2008 11:39:44 +0900
+ -- Charles Plessy <plessy at debian.org>  Sun, 22 Jun 2008 01:37:07 +0900
 
 altree (1.0.1-2) unstable; urgency=low
 

Modified: trunk/packages/altree/trunk/debian/control
===================================================================
--- trunk/packages/altree/trunk/debian/control	2008-06-21 06:40:58 UTC (rev 2085)
+++ trunk/packages/altree/trunk/debian/control	2008-06-21 08:06:30 UTC (rev 2086)
@@ -7,7 +7,7 @@
  Vincent Danjean <vdanjean at debian.org>,
  David Paleino <d.paleino at gmail.com>
 Build-Depends: debhelper (>= 5.0.0), quilt, patchutils (>= 0.2.25), cdbs (>= 0.4.27), perl (>= 5.6.0), latex-make, texlive-lang-french, texlive-latex-extra, texlive-latex-recommended, texlive-fonts-recommended
-Standards-Version: 3.7.3
+Standards-Version: 3.8.0
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/altree/trunk/?rev=0&sc=0
 Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/altree
 Homepage: http://claire.bardel.free.fr/
@@ -18,8 +18,16 @@
 Replaces: libcutils-perl, alphy
 Provides: libcutils-perl, alphy
 Depends: ${shlibs:Depends}, ${misc:Depends}, ${perl:Depends}
+Suggests: altree-examples
 Description: program to perform phylogeny based analyses
- This software was designed to perform phylogeny based analysis: first,
+ ALTree was designed to perform phylogeny based analysis: first,
  it allows the detection of an association between a candidate gene and
  a disease, and second, it enables to make hypothesis about the
  susceptibility loci.
+
+Package: altree-examples
+Architecture: all
+Recommends: altree (= ${binary:Version})
+Description: example files for ALTree
+ This package contains the example files for the ALTree package discussed in
+ its PDF manual.

Modified: trunk/packages/altree/trunk/debian/copyright
===================================================================
--- trunk/packages/altree/trunk/debian/copyright	2008-06-21 06:40:58 UTC (rev 2085)
+++ trunk/packages/altree/trunk/debian/copyright	2008-06-21 08:06:30 UTC (rev 2086)
@@ -1,8 +1,8 @@
-Format-Specification: http://wiki.debian.org/Proposals/CopyrightFormat?action=recall&rev=103
-Debianized-By: Vincent Danjean <Vincent.Danjean at ens-lyon.org>
-Debianized-Date: Mon, 25 Jul 2005 22:22:50 +0200.
+Format-Specification: http://wiki.debian.org/Proposals/CopyrightFormat?action=recall&rev=139
+Upstream-Author: Claire Bardel
+Packaged-By: Vincent Danjean <Vincent.Danjean at ens-lyon.org>
+Packaged-Date: Mon, 25 Jul 2005 22:22:50 +0200
 Original-Source-Location: http://claire.bardel.free.fr/files/altree-1.0.1.tar.gz
-Upstream-Author: Claire Bardel
 
 Files: *
 Copyright: © 2005-2008 Claire Bardel <Claire.Bardel at univ-lyon1.fr>

Deleted: trunk/packages/altree/trunk/debian/docs
===================================================================
--- trunk/packages/altree/trunk/debian/docs	2008-06-21 06:40:58 UTC (rev 2085)
+++ trunk/packages/altree/trunk/debian/docs	2008-06-21 08:06:30 UTC (rev 2086)
@@ -1,2 +0,0 @@
-README
-Documentation/manual.pdf

Modified: trunk/packages/altree/trunk/debian/rules
===================================================================
--- trunk/packages/altree/trunk/debian/rules	2008-06-21 06:40:58 UTC (rev 2085)
+++ trunk/packages/altree/trunk/debian/rules	2008-06-21 08:06:30 UTC (rev 2086)
@@ -1,5 +1,7 @@
 #!/usr/bin/make -f
 
+DEB_COMPRESS_EXCLUDE := .pdf    # The PDF doc will not be compressed
+
 include /usr/share/cdbs/1/rules/debhelper.mk
 include /usr/share/cdbs/1/class/makefile.mk
 include /usr/share/cdbs/1/rules/patchsys-quilt.mk

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