[med-svn] r1638 - in trunk/packages/clustalw/trunk: . debian

[charles-guest at alioth.debian.org]

Author: charles-guest
Date: 2008-03-19 04:16:00 +0000 (Wed, 19 Mar 2008)
New Revision: 1638

Modified:
   trunk/packages/clustalw/trunk/CHANGELOG
   trunk/packages/clustalw/trunk/debian/changelog
   trunk/packages/clustalw/trunk/debian/copyright
Log:
New upstream release; took the opportunity to add a X-Non-Free-Autobuild field in debian/copyright. Updated CHANGELOG. Please wait for testing migration before uploading.

Modified: trunk/packages/clustalw/trunk/CHANGELOG
===================================================================
--- trunk/packages/clustalw/trunk/CHANGELOG	2008-03-19 00:40:32 UTC (rev 1637)
+++ trunk/packages/clustalw/trunk/CHANGELOG	2008-03-19 04:16:00 UTC (rev 1638)
@@ -1,22 +1,36 @@
 ----------------------------------------------------------------------
+Version 2.0.5
+----------------------------------------------------------------------
+
+* Fixed bug 105: Disallowed combination of "Reset Gaps"
+  and Iteration in GUI
+
+* Fixed bug 104 "reset all gaps doesn't work"
+
+* Changed command line separator for Mac to hyphen instead slash
+
+* Fixed full command line parsing for ClustalX after help flag
+
+
+----------------------------------------------------------------------
 Version 2.0.4 
 ----------------------------------------------------------------------
 
 * Updated URLs in help files
 
 * Fixed bug 96: error message when loading alignment with identical
-sequence names
+  sequence names
 
 * Made console output look more like 1.83
 
 * Fixed bug 100: "Scores in clustalw2.0 don't match clustalw1.83"
-getMatrix was called with wrong scaling factor
+  getMatrix was called with wrong scaling factor
 
 * Fixed bug 99: "stars in input not ignored"
-Asterisks were changed to gaps in alignment
+  Asterisks were changed to gaps in alignment
 
 * New command line option: -fullhelp which dumps the built-in help
-file content.
+  file content.
 
 * Quickfix for bug 94 "quicktree seqfault"
 

Modified: trunk/packages/clustalw/trunk/debian/changelog
===================================================================
--- trunk/packages/clustalw/trunk/debian/changelog	2008-03-19 00:40:32 UTC (rev 1637)
+++ trunk/packages/clustalw/trunk/debian/changelog	2008-03-19 04:16:00 UTC (rev 1638)
@@ -1,3 +1,13 @@
+clustalw (2.0.5-1) unstable; urgency=low
+
+  * New upstream release (fixes problems with gaps).
+  * debian/copyright:
+    Added a X-Non-Free-Autobuild field to fullfill requirements from
+    http://lists.debian.org/msgid-search/20061129152824.GT2560@mails.so.argh.org
+  * Updated CHANGELOG from http://www.clustal.org/download/current/CHANGELOG
+
+ -- Charles Plessy <charles-debian-nospam at plessy.org>  Wed, 19 Mar 2008 13:15:20 +0900
+
 clustalw (2.0.4-1) unstable; urgency=low
 
   [ Steffen Moeller ]

Modified: trunk/packages/clustalw/trunk/debian/copyright
===================================================================
--- trunk/packages/clustalw/trunk/debian/copyright	2008-03-19 00:40:32 UTC (rev 1637)
+++ trunk/packages/clustalw/trunk/debian/copyright	2008-03-19 04:16:00 UTC (rev 1638)
@@ -3,6 +3,9 @@
 X-Debianized-Date: Fri, 28 Aug 1998 16:09:48 +0200
 X-Source-Downloaded-From: http://www.clustal.org/download/current/
 X-Upstream-Author: Des Higgins, Julie Thompson and Toby Gibson
+X-Non-Free-Autobuild: yes
+  The licence does not forbid Debian from using autobuilders to create binary
+  packages.
 
 Files: debian/*
 Copyright: © 1998-1999 Stephane Bortzmeyer <bortzmeyer at debian.org>