[med-svn] r1902 - trunk/packages/t-coffee/trunk/debian

Wed May 21 23:58:17 UTC 2008

Author: plessy
Date: 2008-05-21 23:58:16 +0000 (Wed, 21 May 2008)
New Revision: 1902

Removed:
   trunk/packages/t-coffee/trunk/debian/t-coffee-doc.doc-base
Modified:
   trunk/packages/t-coffee/trunk/debian/changelog
   trunk/packages/t-coffee/trunk/debian/copyright
   trunk/packages/t-coffee/trunk/debian/rules
   trunk/packages/t-coffee/trunk/debian/t-coffee-doc.doc-base.technical
   trunk/packages/t-coffee/trunk/debian/t-coffee-doc.doc-base.tutorial
Log:
(D)M-Coffee has to be tested before uploading this pacakge.

Modified: trunk/packages/t-coffee/trunk/debian/changelog
===================================================================

--- trunk/packages/t-coffee/trunk/debian/changelog	2008-05-21 10:43:49 UTC (rev 1901)
+++ trunk/packages/t-coffee/trunk/debian/changelog	2008-05-21 23:58:16 UTC (rev 1902)
@@ -1,4 +1,4 @@
-t-coffee (5.68-1) UNRELEASED; urgency=low
+t-coffee (5.65-1) UNRELEASED; urgency=low
 
   [ David Paleino ]
   * New upstream release
@@ -10,7 +10,7 @@
    - Unicode conversions.
    - Upated the dm-coffee patch because dialign-t was renamed dialign-tx
   * Changed the doc-base section according to the new policy.
-  * Updated my email address.
+  * Updated my email address. 
 
  -- Charles Plessy <plessy at debian.org>  Sun, 27 Apr 2008 16:55:50 +0900
 

Modified: trunk/packages/t-coffee/trunk/debian/copyright
===================================================================
--- trunk/packages/t-coffee/trunk/debian/copyright	2008-05-21 10:43:49 UTC (rev 1901)
+++ trunk/packages/t-coffee/trunk/debian/copyright	2008-05-21 23:58:16 UTC (rev 1902)
@@ -1,15 +1,9 @@
-X-Format-Specification: http://wiki.debian.org/Proposals/CopyrightFormat
-X-Debianized-By: Steffen Moeller <moeller at pzr.uni-rostock.de>
-X-Debianized-Date: Fri, 13 May 2005 10:52:14 +0200
-X-Source-Downloaded-From: http://www.tcoffee.org/Projects_home_page/t_coffee_home_page.html
-X-Upstream-Author: Cédric Notredame <cedric.notredame at europe.com>
+Format-Specification: http://wiki.debian.org/Proposals/CopyrightFormat?action=recall&rev=103
+Debianized-By: Steffen Moeller <moeller at debian.org>
+Debianized-Date: Fri, 13 May 2005 10:52:14 +0200
+Original-Source-Location: http://www.tcoffee.org/Packages/T-COFFEE_distribution_Version_5.65.tar.gz
+Upstream-Author: Cédric Notredame <cedric.notredame at europe.com>
 
-Files: debian/*
-Copyright: © 2005-2007 Steffen Möller <moeller at debian.org>
-License: unknown
-Copyright: © 2006-2008 Charles Plessy <charles-debian-nospam at plessy.org>
-License: same as T-Coffee itself
-
 Files: *
 Copyright: Centre National de la Recherche Scientifique (CNRS) 
            Cédric Notredame <cedric.notredame at europe.com>
@@ -27,6 +21,12 @@
   You should have received a copy of the GNU General Public License
   along with this package; if not, write to the Free Software
   Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA  02110-1301 USA
+X-Comment: On Debian systems, the complete text of the GNU General
+ Public License can be found in `/usr/share/common-licenses/GPL'.
 
-X-Comment: On Debian systems, the complete text of the GNU General
-Public License can be found in `/usr/share/common-licenses/GPL'.
+Files: debian/*
+Copyright: © 2005-2007 Steffen Möller <moeller at debian.org>
+License: unknown
+Copyright: © 2006-2008 Charles Plessy <plessy at debian.org>
+           © 2008 David Paleino <d.paleino at gmail.com>
+License: same as T-Coffee itself

Modified: trunk/packages/t-coffee/trunk/debian/rules
===================================================================
--- trunk/packages/t-coffee/trunk/debian/rules	2008-05-21 10:43:49 UTC (rev 1901)
+++ trunk/packages/t-coffee/trunk/debian/rules	2008-05-21 23:58:16 UTC (rev 1902)
@@ -1,5 +1,7 @@
 #!/usr/bin/make -f
 
+DEB_COMPRESS_EXCLUDE := l.txt	# These are indexed by doc-base
+
 include /usr/share/cdbs/1/rules/patchsys-quilt.mk
 include /usr/share/cdbs/1/rules/debhelper.mk
 include /usr/share/cdbs/1/class/makefile.mk

Deleted: trunk/packages/t-coffee/trunk/debian/t-coffee-doc.doc-base
===================================================================
--- trunk/packages/t-coffee/trunk/debian/t-coffee-doc.doc-base	2008-05-21 10:43:49 UTC (rev 1901)
+++ trunk/packages/t-coffee/trunk/debian/t-coffee-doc.doc-base	2008-05-21 23:58:16 UTC (rev 1902)
@@ -1,12 +0,0 @@
-Document: t-coffee
-Title: T-Coffee Manual
-Author: Cédric Notredame
-Abstract: A description of T-Coffee, the program
- for multiple sequence alignment, and sequence
- formats. The documentation entails both a technical
- description and a tutorial for a novice's first
- steps.
-Section: Science/Biology
-
-Format: text
-Files: /usr/share/doc/t-coffee-doc/t_coffee_tutorial.txt.gz /usr/share/doc/t-coffee-doc/t_coffee_technical.txt.gz

Modified: trunk/packages/t-coffee/trunk/debian/t-coffee-doc.doc-base.technical
===================================================================
--- trunk/packages/t-coffee/trunk/debian/t-coffee-doc.doc-base.technical	2008-05-21 10:43:49 UTC (rev 1901)
+++ trunk/packages/t-coffee/trunk/debian/t-coffee-doc.doc-base.technical	2008-05-21 23:58:16 UTC (rev 1902)
@@ -1,12 +1,13 @@
-Document: t-coffee
-Title: Debian t-coffee Manual
+Document: t-coffee-technical
+Title: T-Coffee: Technical documentation
 Author: Cédric Notredame
-Abstract: A description of T-Coffee, the program
- for multiple sequence alignment, and sequence
- formats. The documentation entails both a technical
- description and a tutorial for a novice's first
- steps.
-Section: Applications/Science/Biology
+Abstract: This manual describes the installation of T-Coffee
+ and provides a reference manual for all its options.
+Section: Science/Biology
 
-Format: text
-Files: /usr/share/doc/t-coffee-doc/t_coffee_tutorial.txt.gz /usr/share/doc/t-coffee-doc/t_coffee_technical.txt.gz
+Format: Text
+Files: /usr/share/doc/t-coffee-doc/t_coffee_technical.txt
+
+Format: HTML
+Index: /usr/share/doc/t-coffee-doc/t_coffee_technical.htm
+Files: /usr/share/doc/t-coffee-doc/t_coffee_technical.htm

Modified: trunk/packages/t-coffee/trunk/debian/t-coffee-doc.doc-base.tutorial
===================================================================
--- trunk/packages/t-coffee/trunk/debian/t-coffee-doc.doc-base.tutorial	2008-05-21 10:43:49 UTC (rev 1901)
+++ trunk/packages/t-coffee/trunk/debian/t-coffee-doc.doc-base.tutorial	2008-05-21 23:58:16 UTC (rev 1902)
@@ -1,12 +1,17 @@
-Document: t-coffee
-Title: Debian t-coffee Manual
+Document: t-coffee-tutorial
+Title: T-Coffee: Tutorial and FAQ
 Author: Cédric Notredame
-Abstract: A description of T-Coffee, the program
- for multiple sequence alignment, and sequence
- formats. The documentation entails both a technical
- description and a tutorial for a novice's first
- steps.
-Section: Applications/Science/Biology
+Abstract: This Document contains two main sections.
+ The first one is a tutorial, where we go from simple things to more
+ complicated and show you how to use all the subtleties of T-Coffee. We have
+ tried to put as many of these functionalities on the web (www.tcoffee.org) but
+ if you need to do something special and highly reproducible, the Command Line
+ is the only way.
+Section: Science/Biology
 
-Format: text
-Files: /usr/share/doc/t-coffee-doc/t_coffee_tutorial.txt.gz /usr/share/doc/t-coffee-doc/t_coffee_technical.txt.gz
+Format: Text
+Files: /usr/share/doc/t-coffee-doc/t_coffee_tutorial.txt
+
+Format: HTML
+Index: /usr/share/doc/t-coffee-doc/t_coffee_tutorial.htm
+Files: /usr/share/doc/t-coffee-doc/t_coffee_tutorial.htm


