Sun Nov 9 15:17:32 UTC 2008

Author: smoe-guest
Date: 2008-11-09 15:17:32 +0000 (Sun, 09 Nov 2008)
New Revision: 2639

Modified:
   trunk/packages/mgltools/BUILD
   trunk/packages/mgltools/autodocktools/trunk/debian/changelog
   trunk/packages/mgltools/autodocktools/trunk/debian/control
   trunk/packages/mgltools/bhtree/trunk/debian/changelog
   trunk/packages/mgltools/bhtree/trunk/debian/control
   trunk/packages/mgltools/cmolkit/trunk/debian/changelog
   trunk/packages/mgltools/dejavu/trunk/debian/changelog
   trunk/packages/mgltools/dejavu/trunk/debian/control
   trunk/packages/mgltools/geomutils/trunk/debian/changelog
   trunk/packages/mgltools/gle/trunk/debian/changelog
   trunk/packages/mgltools/gle/trunk/debian/control
   trunk/packages/mgltools/mglutil/trunk/debian/changelog
   trunk/packages/mgltools/mglutil/trunk/debian/control
   trunk/packages/mgltools/molkit/trunk/debian/changelog
   trunk/packages/mgltools/molkit/trunk/debian/control
   trunk/packages/mgltools/mslib/trunk/debian/changelog
   trunk/packages/mgltools/networkeditor/trunk/debian/changelog
   trunk/packages/mgltools/opengltk/trunk/debian/changelog
   trunk/packages/mgltools/opengltk/trunk/debian/control
   trunk/packages/mgltools/pmv/trunk/debian/changelog
   trunk/packages/mgltools/pyautodock/trunk/debian/changelog
   trunk/packages/mgltools/pyautodock/trunk/debian/control
   trunk/packages/mgltools/pyautodock/trunk/debian/copyright
   trunk/packages/mgltools/pybabel/trunk/debian/changelog
   trunk/packages/mgltools/pyglf/trunk/debian/changelog
   trunk/packages/mgltools/pyglf/trunk/debian/control
   trunk/packages/mgltools/qslimlib/trunk/debian/changelog
   trunk/packages/mgltools/qslimlib/trunk/debian/control
   trunk/packages/mgltools/scenario/trunk/debian/changelog
   trunk/packages/mgltools/sff/trunk/debian/changelog
   trunk/packages/mgltools/sff/trunk/debian/control
   trunk/packages/mgltools/support/trunk/debian/changelog
   trunk/packages/mgltools/symserv/trunk/debian/changelog
   trunk/packages/mgltools/utpackages/trunk/debian/changelog
   trunk/packages/mgltools/utpackages/trunk/debian/control
   trunk/packages/mgltools/viewerframework/trunk/debian/changelog
   trunk/packages/mgltools/vision/trunk/debian/changelog
   trunk/packages/mgltools/volume/trunk/debian/changelog
Log:
* new upstream version retrieved from CVS
* improved build dependencies
* improved BUILD instructions


Modified: trunk/packages/mgltools/BUILD
===================================================================

--- trunk/packages/mgltools/BUILD	2008-11-09 15:08:38 UTC (rev 2638)
+++ trunk/packages/mgltools/BUILD	2008-11-09 15:17:32 UTC (rev 2639)
@@ -26,8 +26,9 @@
 ---------------------------------
 
 The sources are made available on mgltools.scripps.edu. When deciding to
-download the latest from CVS, then perform as described here.  Create a
-new directory, I used "mgltools-cvs" and cd to it:
+download the latest from CVS, then perform as described here.  If you
+have not previously performed the checkout, then create a new directory
+(I used "mgltools-cvs") and cd to it:
 
 	[ -d mgltools ] || mkdir mgltools-cvs
 	cd mgltools-cvs
@@ -39,22 +40,33 @@
 	cvs -d:pserver:anonymous at mgl1.scripps.edu:/opt/cvs login
 
 just give an empty password and continue with the download of some sort of a
-metapackage
+metapackage ... if you have not perform this checkout before in this folder:
 
+	# perform only if previous checkouts are no longer available.
 	cvs -z3  -d:pserver:anonymous at mgl1.scripps.edu:/opt/cvs co MGLPACKSDIST
 
-Should you find packages to remain missing, then write a report to the
-developers and download the missing packages separatedly like this:
+Otherwise, if you have an older version checked out already,
+just change to all of the directories and run the "cvs -z3 update":
 
-  #no longer required for 1.5.1 to download separately
+  for i in *; do echo $i; (cd $i && cvs -z3 update); done
+
+Should you later when performing the Debian packaging find Python libraries to
+remain missing, then write a report to the developers and download the missing
+packages separatedly like this:
+
+  #no longer required for 1.5.2 to download separately
   #cvs -z3  -d:pserver:anonymous at mgl1.scripps.edu:/opt/cvs co SupportDist
 
 Sadly, the names of the directories are invariantly set to a name that
 does not appeal too much to us since they all end on "DIST". These should
-be renamed.
+be renamed. Again, perform this only when first retrieving data from the
+CVS.
 
+  # Chose the previous version instead of 'DIST' 
+  # if the folder contains previously downloaded 
+  # directories.
   PREVDIST=DIST
-  VERSIONNAME=1.5.1.cvs.`date +"%Y%m%d" | tr -d '\n'`
+  VERSIONNAME=1.5.2.cvs.`date +"%Y%m%d" | tr -d '\n'`
   NEWDIST=-$VERSIONNAME
   for i in *$PREVDIST
   do
@@ -78,46 +90,63 @@
 
 The tarballs should be made accessible for svn-buildpackage to be
 found. The file .svn/deb-layout may be used to specify that location
-with the origDir variable. Alternatively, one can
+with the origDir variable. Alternatively, one can link or move the
+files to their new destination.
 
 	[ -d ../tarballs ] || mkdir ../tarballs
-	ln *.tar.gz ../tarballs
+	mv *.tar.gz ../tarballs
 
 Now, to have these tarballs found, the version in the 'debian/changelog'
 files need to match. From debian-med/trunk/packages/mgltools execute
 the following lines to add the new version to the changelogs
 
-	for i in */trunk/debian; do
-		d=`dirname $i`
-		(cd $d && DEBEMAIL=moeller at debian.org debchange --preserve --newversion $VERSIONNAME "New upstream version.")
-	done
+  if [ -z "$VERSIONNAME" ]; then
+    echo "Please specify the new version first."
+  else
+    for i in */trunk/debian; do
+      d=`dirname $i`
+      (cd $d && \
+       DEBEMAIL=moeller at debian.org debchange --preserve \
+           --newversion ${VERSIONNAME}-1 "New upstream version.")
+    done
+  fi
 
+In the not so unlikely event that you want to control
+or manually amend the version description, please consider something
+alike
+
+  if [ -z "$EDITOR" ]; then
+    vi */trunk/debian/changelog
+  else
+    $EDITOR */trunk/debian/changelog
+  fi
+
 Now, there is a build-order to get all the packages built and installed
 without broken dependencies. The installation is not required for the
 building, though. Try the following:
 
+  for p in  \
+    support \
+    symserv \
+    pybabel \
+    sff \
+    mglutil \
+    geomutils \
+    volume \
+    qslimlib \
+    utpackages \
+    bhtree \
+    opengltk \
+    dejavu \
+    pmv \
+    gle \
+    viewerframework \
+    pyautodock \
+    autodocktools \
+  ; do
+    (cd $p/trunk && svn-b && sudo dpkg -i ../../build-area/mgltools-$p_$VERSIONNAME*.deb)
+  done
 
-	for p in  \
-		support \
-		symserv \
-		pybabel \
-		sff \
-		mglutil \
-		geomutils \
-		volume \
-		qslimlib \
-		utpackages \
-		bhtree \
-		opengltk \
-		dejavu \
-		pmv \
-		gle \
-		viewerframework \
-		autodocktools \
-	; do
-		(cd $p/trunk && svn-b && sudo dpkg -i ../../build-area/mgltools-$p_$VERSIONNAME*.deb)
-	done
-
 The relative path of the build-area may differ on your system. It can
 be set in .svn/deb-layout as buildArea=../../build-area
 
@@ -143,7 +172,7 @@
 
 # specify version for what you are packaging
 # (these instructions are possibly outdated :/ )
-VERSION=1.5.1
+VERSION=1.5.2
 
 # Stay in the current directory and download the upstream
 # source code ... or move or symbolically link that file to this

Modified: trunk/packages/mgltools/autodocktools/trunk/debian/changelog
===================================================================
--- trunk/packages/mgltools/autodocktools/trunk/debian/changelog	2008-11-09 15:08:38 UTC (rev 2638)
+++ trunk/packages/mgltools/autodocktools/trunk/debian/changelog	2008-11-09 15:17:32 UTC (rev 2639)
@@ -1,3 +1,9 @@
+autodocktools (1.5.2.cvs.20081109-1) unstable; urgency=low
+
+  * New upstream version.
+
+ -- Steffen Moeller <moeller at debian.org>  Sun, 09 Nov 2008 15:02:28 +0100
+
 autodocktools (1.5.2.cvs.20080731-1) unstable; urgency=low
 
   * Initial release (Closes: #458811).

Modified: trunk/packages/mgltools/autodocktools/trunk/debian/control
===================================================================
--- trunk/packages/mgltools/autodocktools/trunk/debian/control	2008-11-09 15:08:38 UTC (rev 2638)
+++ trunk/packages/mgltools/autodocktools/trunk/debian/control	2008-11-09 15:17:32 UTC (rev 2639)
@@ -16,6 +16,7 @@
 XB-Python-Version: ${python:Versions}
 Architecture: all
 Depends: ${shlibs:Depends}, ${misc:Depends}, ${python:Depends}, mgltools-pmv, mgltools-molkit, mgltools-volume, mgltools-support, python-imaging-tk, mgltools-viewerframework
+Recommends: mgltools-pyautodock
 Suggests: autodock
 Description: GUI to help set up, launch and analyze AutoDock dockings
  This package is part of the mgltools set of Python libraries which

Modified: trunk/packages/mgltools/bhtree/trunk/debian/changelog
===================================================================
--- trunk/packages/mgltools/bhtree/trunk/debian/changelog	2008-11-09 15:08:38 UTC (rev 2638)
+++ trunk/packages/mgltools/bhtree/trunk/debian/changelog	2008-11-09 15:17:32 UTC (rev 2639)
@@ -1,3 +1,9 @@
+mgltools-bhtree (1.5.2.cvs.20081109-1) unstable; urgency=low
+
+  * New upstream version.
+
+ -- Steffen Moeller <moeller at debian.org>  Sun, 09 Nov 2008 15:02:29 +0100
+
 mgltools-bhtree (1.5.2.cvs.20080731-1) unstable; urgency=low
 
   * Initial release, contributes to closing ITP #458811.

Modified: trunk/packages/mgltools/bhtree/trunk/debian/control
===================================================================
--- trunk/packages/mgltools/bhtree/trunk/debian/control	2008-11-09 15:08:38 UTC (rev 2638)
+++ trunk/packages/mgltools/bhtree/trunk/debian/control	2008-11-09 15:17:32 UTC (rev 2639)
@@ -5,7 +5,7 @@
 DM-Upload-Allowed: yes
 XS-Autobuild: yes
 Uploaders: Steffen Moeller <moeller at debian.org>, Sargis Dallakyan <sargis at scripps.edu>
-Build-Depends: debhelper (>= 5.0.38), python-central (>= 0.5.6), cdbs (>= 0.4.49), python2.5-dev
+Build-Depends: debhelper (>= 5.0.38), python-central (>= 0.5.6), cdbs (>= 0.4.49), python2.5-dev, python-numpy
 Standards-Version: 3.8.0
 XS-Python-Version: 2.5
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/mgltools/bhtree/trunk/?rev=0&sc=0

Modified: trunk/packages/mgltools/cmolkit/trunk/debian/changelog
===================================================================
--- trunk/packages/mgltools/cmolkit/trunk/debian/changelog	2008-11-09 15:08:38 UTC (rev 2638)
+++ trunk/packages/mgltools/cmolkit/trunk/debian/changelog	2008-11-09 15:17:32 UTC (rev 2639)
@@ -1,3 +1,9 @@
+mgltools-cmolkit (1.5.2.cvs.20081109-1) unstable; urgency=low
+
+  * New upstream version.
+
+ -- Steffen Moeller <moeller at debian.org>  Sun, 09 Nov 2008 15:02:30 +0100
+
 mgltools-cmolkit (1.5.2.cvs.20080731-1) unstable; urgency=low
 
   * Initial release, contributes to closing ITP #458811.

Modified: trunk/packages/mgltools/dejavu/trunk/debian/changelog
===================================================================
--- trunk/packages/mgltools/dejavu/trunk/debian/changelog	2008-11-09 15:08:38 UTC (rev 2638)
+++ trunk/packages/mgltools/dejavu/trunk/debian/changelog	2008-11-09 15:17:32 UTC (rev 2639)
@@ -1,3 +1,9 @@
+mgltools-dejavu (1.5.2.cvs.20081109-1) unstable; urgency=low
+
+  * New upstream version.
+
+ -- Steffen Moeller <moeller at debian.org>  Sun, 09 Nov 2008 15:02:30 +0100
+
 mgltools-dejavu (1.5.2.cvs.20080731-1) unstable; urgency=low
 
   * Initial release, contributes to closing ITP #458811.

Modified: trunk/packages/mgltools/dejavu/trunk/debian/control
===================================================================
--- trunk/packages/mgltools/dejavu/trunk/debian/control	2008-11-09 15:08:38 UTC (rev 2638)
+++ trunk/packages/mgltools/dejavu/trunk/debian/control	2008-11-09 15:17:32 UTC (rev 2639)
@@ -5,7 +5,7 @@
 DM-Upload-Allowed: yes
 XS-Autobuild: yes
 Uploaders: Steffen Moeller <moeller at debian.org>, Sargis Dallakyan <sargis at scripps.edu>
-Build-Depends: debhelper (>= 5.0.38), python-central (>= 0.5.6), cdbs (>= 0.4.49), python2.5-dev
+Build-Depends: debhelper (>= 5.0.38), python-central (>= 0.5.6), cdbs (>= 0.4.49), python2.5-dev, mesa-common-dev, x11proto-core-dev, libx11-dev, python-numpy
 Standards-Version: 3.8.0
 XS-Python-Version: 2.5
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/mgltools/dejavu/trunk/?rev=0&sc=0

Modified: trunk/packages/mgltools/geomutils/trunk/debian/changelog
===================================================================
--- trunk/packages/mgltools/geomutils/trunk/debian/changelog	2008-11-09 15:08:38 UTC (rev 2638)
+++ trunk/packages/mgltools/geomutils/trunk/debian/changelog	2008-11-09 15:17:32 UTC (rev 2639)
@@ -1,3 +1,9 @@
+mgltools-geomutils (1.5.2.cvs.20081109-1) unstable; urgency=low
+
+  * New upstream version.
+
+ -- Steffen Moeller <moeller at debian.org>  Sun, 09 Nov 2008 15:02:31 +0100
+
 mgltools-geomutils (1.5.2.cvs.20080731-1) unstable; urgency=low
 
   * Initial release, contributes to closing ITP #458811.

Modified: trunk/packages/mgltools/gle/trunk/debian/changelog
===================================================================
--- trunk/packages/mgltools/gle/trunk/debian/changelog	2008-11-09 15:08:38 UTC (rev 2638)
+++ trunk/packages/mgltools/gle/trunk/debian/changelog	2008-11-09 15:17:32 UTC (rev 2639)
@@ -1,3 +1,9 @@
+mgltools-gle (1.5.2.cvs.20081109-1) unstable; urgency=low
+
+  * New upstream version.
+
+ -- Steffen Moeller <moeller at debian.org>  Sun, 09 Nov 2008 15:02:32 +0100
+
 mgltools-gle (1.5.2.cvs.20080731-1) unstable; urgency=low
 
   * Initial release, contributes to closing ITP #458811.

Modified: trunk/packages/mgltools/gle/trunk/debian/control
===================================================================
--- trunk/packages/mgltools/gle/trunk/debian/control	2008-11-09 15:08:38 UTC (rev 2638)
+++ trunk/packages/mgltools/gle/trunk/debian/control	2008-11-09 15:17:32 UTC (rev 2639)
@@ -5,7 +5,7 @@
 DM-Upload-Allowed: yes
 XS-Autobuild: yes
 Uploaders: Steffen Moeller <moeller at debian.org>, Sargis Dallakyan <sargis at scripps.edu>
-Build-Depends: debhelper (>= 5.0.38), python-central (>= 0.5.6), cdbs (>= 0.4.49), swig (>= 1.3.20), python2.5-dev, python-numpy, libglu1-mesa-dev
+Build-Depends: debhelper (>= 5.0.38), python-central (>= 0.5.6), cdbs (>= 0.4.49), swig (>= 1.3.20), python2.5-dev, python-numpy, libglu1-mesa-dev, mesa-common-dev
 Standards-Version: 3.8.0
 XS-Python-Version: 2.5
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/mgltools/gle/trunk/?rev=0&sc=0

Modified: trunk/packages/mgltools/mglutil/trunk/debian/changelog
===================================================================
--- trunk/packages/mgltools/mglutil/trunk/debian/changelog	2008-11-09 15:08:38 UTC (rev 2638)
+++ trunk/packages/mgltools/mglutil/trunk/debian/changelog	2008-11-09 15:17:32 UTC (rev 2639)
@@ -1,3 +1,9 @@
+mgltools-mglutil (1.5.2.cvs.20081109-1) unstable; urgency=low
+
+  * New upstream version.
+
+ -- Steffen Moeller <moeller at debian.org>  Sun, 09 Nov 2008 15:02:32 +0100
+
 mgltools-mglutil (1.5.2.cvs.20080731-1) unstable; urgency=low
 
   * Initial release, contributes to closing ITP #458811.

Modified: trunk/packages/mgltools/mglutil/trunk/debian/control
===================================================================
--- trunk/packages/mgltools/mglutil/trunk/debian/control	2008-11-09 15:08:38 UTC (rev 2638)
+++ trunk/packages/mgltools/mglutil/trunk/debian/control	2008-11-09 15:17:32 UTC (rev 2639)
@@ -16,7 +16,7 @@
 XB-Python-Version: ${python:Versions}
 Architecture: all
 Depends: ${shlibs:Depends}, ${misc:Depends}, ${python:Depends}, mgltools-sff, python-pmw
-Recommends: qhull
+Recommends: qhull-bin
 Suggests: tcsh
 Description: Molecular Graphics Laboratory utility collection
  This package is part of the mgltools set of Python libraries which

Modified: trunk/packages/mgltools/molkit/trunk/debian/changelog
===================================================================
--- trunk/packages/mgltools/molkit/trunk/debian/changelog	2008-11-09 15:08:38 UTC (rev 2638)
+++ trunk/packages/mgltools/molkit/trunk/debian/changelog	2008-11-09 15:17:32 UTC (rev 2639)
@@ -1,3 +1,9 @@
+mgltools-molkit (1.5.2.cvs.20081109-1) unstable; urgency=low
+
+  * New upstream version.
+
+ -- Steffen Moeller <moeller at debian.org>  Sun, 09 Nov 2008 15:02:33 +0100
+
 mgltools-molkit (1.5.2.cvs.20080731-1) unstable; urgency=low
 
   * Initial release, contributes to closing ITP #458811.

Modified: trunk/packages/mgltools/molkit/trunk/debian/control
===================================================================
--- trunk/packages/mgltools/molkit/trunk/debian/control	2008-11-09 15:08:38 UTC (rev 2638)
+++ trunk/packages/mgltools/molkit/trunk/debian/control	2008-11-09 15:17:32 UTC (rev 2639)
@@ -5,7 +5,7 @@
 DM-Upload-Allowed: yes
 XS-Autobuild: yes
 Uploaders: Steffen Moeller <moeller at debian.org>, Sargis Dallakyan <sargis at scripps.edu>
-Build-Depends: debhelper (>= 5.0.38), python-central (>= 0.5.6), cdbs (>= 0.4.49), python2.5-dev
+Build-Depends: debhelper (>= 5.0.38), python-central (>= 0.5.6), cdbs (>= 0.4.49), python2.5-dev, python-numpy
 Standards-Version: 3.8.0
 XS-Python-Version: 2.5
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/mgltools/molkit/trunk/?rev=0&sc=0
@@ -15,7 +15,7 @@
 Package: mgltools-molkit
 XB-Python-Version: ${python:Versions}
 Architecture: all
-Depends: ${shlibs:Depends}, ${misc:Depends}, ${python:Depends}, mgltools-pybabel, mgltools-dejavu, mgltools-bhtree, mgltools-sff
+Depends: ${shlibs:Depends}, ${misc:Depends}, ${python:Depends}, mgltools-pybabel, mgltools-dejavu, mgltools-bhtree, mgltools-sff, python-numpy
 Suggests: pdb2pqr
 Description: Python classes to read and manipulate molecules
  This package is part of the mgltools set of Python libraries which

Modified: trunk/packages/mgltools/mslib/trunk/debian/changelog
===================================================================
--- trunk/packages/mgltools/mslib/trunk/debian/changelog	2008-11-09 15:08:38 UTC (rev 2638)
+++ trunk/packages/mgltools/mslib/trunk/debian/changelog	2008-11-09 15:17:32 UTC (rev 2639)
@@ -1,3 +1,9 @@
+mgltools-mslib (1.5.2.cvs.20081109-1) UNRELEASED; urgency=low
+
+  * New upstream version.
+
+ -- Steffen Moeller <moeller at debian.org>  Sun, 09 Nov 2008 15:02:34 +0100
+
 mgltools-mslib (1.5.2.cvs.20080731-1) UNRELEASED; urgency=low
 
   * Initial release, contributes to closing ITP #458811.

Modified: trunk/packages/mgltools/networkeditor/trunk/debian/changelog
===================================================================
--- trunk/packages/mgltools/networkeditor/trunk/debian/changelog	2008-11-09 15:08:38 UTC (rev 2638)
+++ trunk/packages/mgltools/networkeditor/trunk/debian/changelog	2008-11-09 15:17:32 UTC (rev 2639)
@@ -1,3 +1,9 @@
+mgltools-networkeditor (1.5.2.cvs.20081109-1) unstable; urgency=low
+
+  * New upstream version.
+
+ -- Steffen Moeller <moeller at debian.org>  Sun, 09 Nov 2008 15:02:34 +0100
+
 mgltools-networkeditor (1.5.2.cvs.20080731-1) unstable; urgency=low
 
   * Initial release, contributes to closing ITP #458811.

Modified: trunk/packages/mgltools/opengltk/trunk/debian/changelog
===================================================================
--- trunk/packages/mgltools/opengltk/trunk/debian/changelog	2008-11-09 15:08:38 UTC (rev 2638)
+++ trunk/packages/mgltools/opengltk/trunk/debian/changelog	2008-11-09 15:17:32 UTC (rev 2639)
@@ -1,3 +1,9 @@
+mgltools-opengltk (1.5.2.cvs.20081109-1) unstable; urgency=low
+
+  * New upstream version.
+
+ -- Steffen Moeller <moeller at debian.org>  Sun, 09 Nov 2008 15:02:35 +0100
+
 mgltools-opengltk (1.5.2.cvs.20080731-1) unstable; urgency=low
 
   * Initial release, contributes to closing ITP #458811.

Modified: trunk/packages/mgltools/opengltk/trunk/debian/control
===================================================================
--- trunk/packages/mgltools/opengltk/trunk/debian/control	2008-11-09 15:08:38 UTC (rev 2638)
+++ trunk/packages/mgltools/opengltk/trunk/debian/control	2008-11-09 15:17:32 UTC (rev 2639)
@@ -14,7 +14,7 @@
 XB-Python-Version: ${python:Versions}
 Provides: ${python:Provides}
 Architecture: any
-Depends: ${shlibs:Depends}, ${misc:Depends}, ${python:Depends}, libglu1-mesa, tk, python-numpy
+Depends: ${shlibs:Depends}, ${misc:Depends}, ${python:Depends}, libglu1-mesa, tk, python-numpy, mgltools-gle
 Description: opengltk python extension
  The library is needed by mgltools-autodocktools at runtime.  It contains
  the interface for building OpenGL python extensions with the python 

Modified: trunk/packages/mgltools/pmv/trunk/debian/changelog
===================================================================
--- trunk/packages/mgltools/pmv/trunk/debian/changelog	2008-11-09 15:08:38 UTC (rev 2638)
+++ trunk/packages/mgltools/pmv/trunk/debian/changelog	2008-11-09 15:17:32 UTC (rev 2639)
@@ -1,3 +1,9 @@
+mgltools-pmv (1.5.2.cvs.20081109-1) unstable; urgency=low
+
+  * New upstream version.
+
+ -- Steffen Moeller <moeller at debian.org>  Sun, 09 Nov 2008 15:02:35 +0100
+
 mgltools-pmv (1.5.2.cvs.20080731-1) unstable; urgency=low
 
   * Initial release, contributes to closing ITP #458811.

Modified: trunk/packages/mgltools/pyautodock/trunk/debian/changelog
===================================================================
--- trunk/packages/mgltools/pyautodock/trunk/debian/changelog	2008-11-09 15:08:38 UTC (rev 2638)
+++ trunk/packages/mgltools/pyautodock/trunk/debian/changelog	2008-11-09 15:17:32 UTC (rev 2639)
@@ -1,3 +1,9 @@
+mgltools-pyautodock (1.5.2.cvs.20081109-1) unstable; urgency=low
+
+  * New upstream version.
+
+ -- Steffen Moeller <moeller at debian.org>  Sun, 09 Nov 2008 15:02:36 +0100
+
 mgltools-pyautodock (1.5.2.cvs.20080731-1) unstable; urgency=low
 
   * Initial release, contributes to closing ITP #458811.

Modified: trunk/packages/mgltools/pyautodock/trunk/debian/control
===================================================================
--- trunk/packages/mgltools/pyautodock/trunk/debian/control	2008-11-09 15:08:38 UTC (rev 2638)
+++ trunk/packages/mgltools/pyautodock/trunk/debian/control	2008-11-09 15:17:32 UTC (rev 2639)
@@ -15,12 +15,15 @@
 Package: mgltools-pyautodock
 XB-Python-Version: ${python:Versions}
 Architecture: all
-Depends: ${shlibs:Depends}, ${misc:Depends}, ${python:Depends}
+Depends: ${shlibs:Depends}, ${misc:Depends}, ${python:Depends}, python-numpy, mgltools-molkit
 Suggests: autodock
 Description: Python implementation of autodock
  This package is part of the mgltools set of Python libraries which
  provide an infrastructure for the analysis of protein structures and
- their docking of chemical compounds.
+ their docking of chemical compounds.  This package provides a python
+ implementation of the autodock3 scoring function and of the new
+ autodock4 scoring function. Also it includes a python implementation
+ of AutoGrid.
  .
  AutoDock is a well established package for the automated screening of
  libraries of formal representation of chemical compounds that putatively

Modified: trunk/packages/mgltools/pyautodock/trunk/debian/copyright
===================================================================
--- trunk/packages/mgltools/pyautodock/trunk/debian/copyright	2008-11-09 15:08:38 UTC (rev 2638)
+++ trunk/packages/mgltools/pyautodock/trunk/debian/copyright	2008-11-09 15:17:32 UTC (rev 2639)
@@ -16,21 +16,10 @@
 
     with contributions by
 
+	    William  Lindstrom
             Ruth Huey <rhuey at scripps.edu>
 	    Alex Gillet <gillet at scripps.edu>
 	    Guillaume Vareille <vareille at scripps.edu>
-	    William  Lindstrom
-	    Garrett M. Morris <garrett at scripps.edu>
-	    David S. Goodsell
-	    Arthur J. Olson 
-	    Sargis Dallakyan <sargis at scripps.edu>
-	    Rodney Harris
-	    Konrad Hinsen <hinsen at cnrs-orleans.fr>
-	    John E. Grayson
-	    Sowjanya Karnati
-	    Sandro Cosconati
-	    Daniel Stoffler <stoffler at scripps.edu>
-	    Michael F. Sanner <sanner at scripps.edu>
 
 Copyright: 
 

Modified: trunk/packages/mgltools/pybabel/trunk/debian/changelog
===================================================================
--- trunk/packages/mgltools/pybabel/trunk/debian/changelog	2008-11-09 15:08:38 UTC (rev 2638)
+++ trunk/packages/mgltools/pybabel/trunk/debian/changelog	2008-11-09 15:17:32 UTC (rev 2639)
@@ -1,3 +1,9 @@
+mgltools-pybabel (1.5.2.cvs.20081109-1) unstable; urgency=low
+
+  * New upstream version.
+
+ -- Steffen Moeller <moeller at debian.org>  Sun, 09 Nov 2008 15:02:37 +0100
+
 mgltools-pybabel (1.5.2.cvs.20080731-1) unstable; urgency=low
 
   * Initial release, contributes to closing ITP #458811.

Modified: trunk/packages/mgltools/pyglf/trunk/debian/changelog
===================================================================
--- trunk/packages/mgltools/pyglf/trunk/debian/changelog	2008-11-09 15:08:38 UTC (rev 2638)
+++ trunk/packages/mgltools/pyglf/trunk/debian/changelog	2008-11-09 15:17:32 UTC (rev 2639)
@@ -1,3 +1,9 @@
+mgltools-pyglf (1.5.2.cvs.20081109-1) unstable; urgency=low
+
+  * New upstream version.
+
+ -- Steffen Moeller <moeller at debian.org>  Sun, 09 Nov 2008 15:02:38 +0100
+
 mgltools-pyglf (1.5.2.cvs.20080731-1) unstable; urgency=low
 
   * Initial release, contributes to closing ITP #458811.

Modified: trunk/packages/mgltools/pyglf/trunk/debian/control
===================================================================
--- trunk/packages/mgltools/pyglf/trunk/debian/control	2008-11-09 15:08:38 UTC (rev 2638)
+++ trunk/packages/mgltools/pyglf/trunk/debian/control	2008-11-09 15:17:32 UTC (rev 2639)
@@ -5,7 +5,7 @@
 DM-Upload-Allowed: yes
 XS-Autobuild: yes
 Uploaders: Steffen Moeller <moeller at debian.org>, Sargis Dallakyan <sargis at scripps.edu>
-Build-Depends: debhelper (>= 5.0.38), python-central (>= 0.5.6), cdbs (>= 0.4.49), python2.5-dev, libxi-dev, swig, libglu1-mesa-dev, libxmu-dev
+Build-Depends: debhelper (>= 5.0.38), python-central (>= 0.5.6), cdbs (>= 0.4.49), python2.5-dev, libxi-dev, swig, libglu1-mesa-dev, libxmu-dev, mesa-common-dev, libglut3-dev, python-numpy
 Standards-Version: 3.8.0
 XS-Python-Version: 2.5
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/mgltools/pyglf/trunk/?rev=0&sc=0

Modified: trunk/packages/mgltools/qslimlib/trunk/debian/changelog
===================================================================
--- trunk/packages/mgltools/qslimlib/trunk/debian/changelog	2008-11-09 15:08:38 UTC (rev 2638)
+++ trunk/packages/mgltools/qslimlib/trunk/debian/changelog	2008-11-09 15:17:32 UTC (rev 2639)
@@ -1,3 +1,9 @@
+mgltools-qslimlib (1.5.2.cvs.20081109-1) unstable; urgency=low
+
+  * New upstream version.
+
+ -- Steffen Moeller <moeller at debian.org>  Sun, 09 Nov 2008 15:02:38 +0100
+
 mgltools-qslimlib (1.5.2.cvs.20080731-1) unstable; urgency=low
 
   * Initial release, contributes to closing ITP #458811.

Modified: trunk/packages/mgltools/qslimlib/trunk/debian/control
===================================================================
--- trunk/packages/mgltools/qslimlib/trunk/debian/control	2008-11-09 15:08:38 UTC (rev 2638)
+++ trunk/packages/mgltools/qslimlib/trunk/debian/control	2008-11-09 15:17:32 UTC (rev 2639)
@@ -5,7 +5,7 @@
 DM-Upload-Allowed: yes
 XS-Autobuild: yes
 Uploaders: Steffen Moeller <moeller at debian.org>, Sargis Dallakyan <sargis at scripps.edu>
-Build-Depends: debhelper (>= 5.0.38), python-central (>= 0.5.6), cdbs (>= 0.4.49), python2.5-dev, swig (>= 1.3.20)
+Build-Depends: debhelper (>= 5.0.38), python-central (>= 0.5.6), cdbs (>= 0.4.49), python2.5-dev, swig (>= 1.3.20), mesa-common-dev, libglu1-mesa-dev, python-numpy
 Standards-Version: 3.8.0
 XS-Python-Version: 2.5
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/mgltools/qslimlib/trunk/?rev=0&sc=0

Modified: trunk/packages/mgltools/scenario/trunk/debian/changelog
===================================================================
--- trunk/packages/mgltools/scenario/trunk/debian/changelog	2008-11-09 15:08:38 UTC (rev 2638)
+++ trunk/packages/mgltools/scenario/trunk/debian/changelog	2008-11-09 15:17:32 UTC (rev 2639)
@@ -1,3 +1,9 @@
+mgltools-scenario (1.5.2.cvs.20081109-1) unstable; urgency=low
+
+  * New upstream version.
+
+ -- Steffen Moeller <moeller at debian.org>  Sun, 09 Nov 2008 15:02:39 +0100
+
 mgltools-scenario (1.5.2.cvs.20080731-1) unstable; urgency=low
 
   * Initial release, contributes to closing ITP #458811.

Modified: trunk/packages/mgltools/sff/trunk/debian/changelog
===================================================================
--- trunk/packages/mgltools/sff/trunk/debian/changelog	2008-11-09 15:08:38 UTC (rev 2638)
+++ trunk/packages/mgltools/sff/trunk/debian/changelog	2008-11-09 15:17:32 UTC (rev 2639)
@@ -1,3 +1,9 @@
+mgltools-sff (1.5.2.cvs.20081109-1) unstable; urgency=low
+
+  * New upstream version.
+
+ -- Steffen Moeller <moeller at debian.org>  Sun, 09 Nov 2008 15:02:39 +0100
+
 mgltools-sff (1.5.2.cvs.20080731-1) unstable; urgency=low
 
   * Initial release, contributes to closing ITP #458811.

Modified: trunk/packages/mgltools/sff/trunk/debian/control
===================================================================
--- trunk/packages/mgltools/sff/trunk/debian/control	2008-11-09 15:08:38 UTC (rev 2638)
+++ trunk/packages/mgltools/sff/trunk/debian/control	2008-11-09 15:17:32 UTC (rev 2639)
@@ -5,7 +5,7 @@
 DM-Upload-Allowed: yes
 XS-Autobuild: yes
 Uploaders: Steffen Moeller <moeller at debian.org>, Sargis Dallakyan <sargis at scripps.edu>
-Build-Depends: debhelper (>= 5.0.38), python-central (>= 0.5.6), cdbs (>= 0.4.49), python2.5-dev, swig (>= 1.3.20), python-numpy
+Build-Depends: debhelper (>= 5.0.38), python-central (>= 0.5.6), cdbs (>= 0.4.49), python2.5-dev, swig (>= 1.3.20), python-numpy, mgltools-bhtree
 Standards-Version: 3.8.0
 XS-Python-Version: 2.5
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/mgltools/sff/trunk/?rev=0&sc=0
@@ -15,7 +15,7 @@
 Package: mgltools-sff
 XB-Python-Version: ${python:Versions}
 Architecture: any
-Depends: ${shlibs:Depends}, ${misc:Depends}, ${python:Depends}, python-numpy
+Depends: ${shlibs:Depends}, ${misc:Depends}, ${python:Depends}, python-numpy, mgltools-bhtree
 Description: Simple Force Field for Python
  This package is part of the mgltools set of Python libraries which
  provide an infrastructure for the analysis of protein structures and

Modified: trunk/packages/mgltools/support/trunk/debian/changelog
===================================================================
--- trunk/packages/mgltools/support/trunk/debian/changelog	2008-11-09 15:08:38 UTC (rev 2638)
+++ trunk/packages/mgltools/support/trunk/debian/changelog	2008-11-09 15:17:32 UTC (rev 2639)
@@ -1,3 +1,9 @@
+mgltools-support (1.5.2.cvs.20081109-1) unstable; urgency=low
+
+  * New upstream version.
+
+ -- Steffen Moeller <moeller at debian.org>  Sun, 09 Nov 2008 15:02:40 +0100
+
 mgltools-support (1.5.2.cvs.20080731-1) unstable; urgency=low
 
   * Initial release, contributes to closing ITP #458811.

Modified: trunk/packages/mgltools/symserv/trunk/debian/changelog
===================================================================
--- trunk/packages/mgltools/symserv/trunk/debian/changelog	2008-11-09 15:08:38 UTC (rev 2638)
+++ trunk/packages/mgltools/symserv/trunk/debian/changelog	2008-11-09 15:17:32 UTC (rev 2639)
@@ -1,3 +1,9 @@
+mgltools-symserv (1.5.2.cvs.20081109-1) unstable; urgency=low
+
+  * New upstream version.
+
+ -- Steffen Moeller <moeller at debian.org>  Sun, 09 Nov 2008 15:02:40 +0100
+
 mgltools-symserv (1.5.2.cvs.20080731-1) unstable; urgency=low
 
   * Initial release, contributes to closing ITP #458811.

Modified: trunk/packages/mgltools/utpackages/trunk/debian/changelog
===================================================================
--- trunk/packages/mgltools/utpackages/trunk/debian/changelog	2008-11-09 15:08:38 UTC (rev 2638)
+++ trunk/packages/mgltools/utpackages/trunk/debian/changelog	2008-11-09 15:17:32 UTC (rev 2639)
@@ -1,3 +1,9 @@
+mgltools-utpackages (1.5.2.cvs.20081109-1) unstable; urgency=low
+
+  * New upstream version.
+
+ -- Steffen Moeller <moeller at debian.org>  Sun, 09 Nov 2008 15:02:41 +0100
+
 mgltools-utpackages (1.5.2.cvs.20080731-1) unstable; urgency=low
 
   * Initial release, contributes to closing ITP #458811.

Modified: trunk/packages/mgltools/utpackages/trunk/debian/control
===================================================================
--- trunk/packages/mgltools/utpackages/trunk/debian/control	2008-11-09 15:08:38 UTC (rev 2638)
+++ trunk/packages/mgltools/utpackages/trunk/debian/control	2008-11-09 15:17:32 UTC (rev 2639)
@@ -5,7 +5,7 @@
 DM-Upload-Allowed: yes
 XS-Autobuild: yes
 Uploaders: Steffen Moeller <moeller at debian.org>, Sargis Dallakyan <sargis at scripps.edu>
-Build-Depends: debhelper (>= 5.0.38), python-central (>= 0.5.6), cdbs (>= 0.4.49), python2.5-dev, swig
+Build-Depends: debhelper (>= 5.0.38), python-central (>= 0.5.6), cdbs (>= 0.4.49), python2.5-dev, swig, mesa-common-dev, libglu1-mesa-dev, libglut3-dev, python-numpy
 Standards-Version: 3.8.0
 XS-Python-Version: 2.5
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/mgltools/pybabel/trunk/?rev=0&sc=0

Modified: trunk/packages/mgltools/viewerframework/trunk/debian/changelog
===================================================================
--- trunk/packages/mgltools/viewerframework/trunk/debian/changelog	2008-11-09 15:08:38 UTC (rev 2638)
+++ trunk/packages/mgltools/viewerframework/trunk/debian/changelog	2008-11-09 15:17:32 UTC (rev 2639)
@@ -1,3 +1,9 @@
+mgltools-viewerframework (1.5.2.cvs.20081109-1) unstable; urgency=low
+
+  * New upstream version.
+
+ -- Steffen Moeller <moeller at debian.org>  Sun, 09 Nov 2008 15:02:42 +0100
+
 mgltools-viewerframework (1.5.2.cvs.20080731-1) unstable; urgency=low
 
   * Initial release, contributes to closing ITP #458811.

Modified: trunk/packages/mgltools/vision/trunk/debian/changelog
===================================================================
--- trunk/packages/mgltools/vision/trunk/debian/changelog	2008-11-09 15:08:38 UTC (rev 2638)
+++ trunk/packages/mgltools/vision/trunk/debian/changelog	2008-11-09 15:17:32 UTC (rev 2639)
@@ -1,3 +1,9 @@
+mgltools-vision (1.5.2.cvs.20081109-1) unstable; urgency=low
+
+  * New upstream version.
+
+ -- Steffen Moeller <moeller at debian.org>  Sun, 09 Nov 2008 15:02:42 +0100
+
 mgltools-vision (1.5.2.cvs.20080731-1) unstable; urgency=low
 
   * Initial release, contributes to closing ITP #458811.

Modified: trunk/packages/mgltools/volume/trunk/debian/changelog
===================================================================
--- trunk/packages/mgltools/volume/trunk/debian/changelog	2008-11-09 15:08:38 UTC (rev 2638)
+++ trunk/packages/mgltools/volume/trunk/debian/changelog	2008-11-09 15:17:32 UTC (rev 2639)
@@ -1,3 +1,9 @@
+mgltools-volume (1.5.2.cvs.20081109-1) unstable; urgency=low
+
+  * New upstream version.
+
+ -- Steffen Moeller <moeller at debian.org>  Sun, 09 Nov 2008 15:02:43 +0100
+
 mgltools-volume (1.5.2.cvs.20080731-1) unstable; urgency=low
 
   * Initial release, contributes to closing ITP #458811.


