[med-svn] r2686 - trunk/packages/clustalw/trunk/debian

Sat Nov 15 09:29:22 UTC 2008

Author: plessy
Date: 2008-11-15 09:29:22 +0000 (Sat, 15 Nov 2008)
New Revision: 2686

Added:
   trunk/packages/clustalw/trunk/debian/clustalw.lintian-overrides
   trunk/packages/clustalw/trunk/debian/reference
Removed:
   trunk/packages/clustalw/trunk/debian/overrides/
Modified:
   trunk/packages/clustalw/trunk/debian/changelog
   trunk/packages/clustalw/trunk/debian/compat
   trunk/packages/clustalw/trunk/debian/control
   trunk/packages/clustalw/trunk/debian/copyright
Log:
New upstream release, addition of bibliographic ref, use of dh_lintian.


Modified: trunk/packages/clustalw/trunk/debian/changelog
===================================================================

--- trunk/packages/clustalw/trunk/debian/changelog	2008-11-15 08:19:54 UTC (rev 2685)
+++ trunk/packages/clustalw/trunk/debian/changelog	2008-11-15 09:29:22 UTC (rev 2686)
@@ -1,3 +1,19 @@
+clustalw (2.0.10-1) UNRELEASED; urgency=low
+
+  TODO BEFORE UPLOADING: update the man pages.
+
+  * New upstream release:
+    - New -quiet and -stats=<file> command line flags.
+    - command separator can now be mixed "/" and "-" on all platforms.
+  * Added bibliographic information in BibTeX format in debian/reference.
+  * Using Debhelper 7 (debian/control, debian/compat).
+  * Enhances: bioperl-run (it has a wrapper for clustalw).
+  * debian/overrides/clustalw renamed debian/clustalw.lintian-overrides,
+    and is not anymore installed by dh_install (dh_lintian, called by
+    CDBS, takes care of it).
+
+ -- Charles Plessy <plessy at debian.org>  Sat, 15 Nov 2008 18:15:04 +0900
+
 clustalw (2.0.9-1) unstable; urgency=low
 
   * New upstream release.

Copied: trunk/packages/clustalw/trunk/debian/clustalw.lintian-overrides (from rev 2683, trunk/packages/clustalw/trunk/debian/overrides/clustalw)
===================================================================
--- trunk/packages/clustalw/trunk/debian/clustalw.lintian-overrides	                        (rev 0)
+++ trunk/packages/clustalw/trunk/debian/clustalw.lintian-overrides	2008-11-15 09:29:22 UTC (rev 2686)
@@ -0,0 +1,4 @@
+# This file is included by upstream's request.
+# (See the last comment in /usr/share/doc/clustalw/copyright.)
+#
+clustalw: extra-license-file usr/share/doc/clustalw/LICENSE


Property changes on: trunk/packages/clustalw/trunk/debian/clustalw.lintian-overrides
___________________________________________________________________
Name: svn:mergeinfo
   + 

Modified: trunk/packages/clustalw/trunk/debian/compat
===================================================================
--- trunk/packages/clustalw/trunk/debian/compat	2008-11-15 08:19:54 UTC (rev 2685)
+++ trunk/packages/clustalw/trunk/debian/compat	2008-11-15 09:29:22 UTC (rev 2686)
@@ -1 +1 @@
-5
+7

Modified: trunk/packages/clustalw/trunk/debian/control
===================================================================
--- trunk/packages/clustalw/trunk/debian/control	2008-11-15 08:19:54 UTC (rev 2685)
+++ trunk/packages/clustalw/trunk/debian/control	2008-11-15 09:29:22 UTC (rev 2686)
@@ -4,7 +4,7 @@
 Maintainer: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
 DM-Upload-Allowed: yes
 Uploaders: Steffen Moeller <moeller at debian.org>, Charles Plessy <plessy at debian.org>
-Build-Depends: debhelper (>= 5), cdbs, autotools-dev
+Build-Depends: debhelper (>= 7), cdbs, autotools-dev
 Standards-Version: 3.8.0
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/clustalw/trunk/?rev=0&sc=0
 Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/clustalw/trunk/
@@ -15,7 +15,7 @@
 Architecture: any
 Depends: ${shlibs:Depends}
 Suggests: clustalx, seaview
-Enhances: emboss, t-coffee
+Enhances: bioperl-run, emboss, t-coffee
 Description: global multiple nucleotide or peptide sequence alignment
  This program performs an alignment of multiple nucleotide or amino acid
  sequences. It recognizes the format of input sequences and whether the

Modified: trunk/packages/clustalw/trunk/debian/copyright
===================================================================
--- trunk/packages/clustalw/trunk/debian/copyright	2008-11-15 08:19:54 UTC (rev 2685)
+++ trunk/packages/clustalw/trunk/debian/copyright	2008-11-15 09:29:22 UTC (rev 2686)
@@ -1,8 +1,8 @@
 Format-Specification: http://wiki.debian.org/Proposals/CopyrightFormat?action=recall&rev=129
 Upstream-Author: Des Higgins, Julie Thompson and Toby Gibson
-Packaged-By: Stephane Bortzmeyer <bortzmeyer at debian.org>
-Packaged-Date: Fri, 28 Aug 1998 16:09:48 +0200
-Original-Source-Location: http://www.clustal.org/download/current/clustalw-2.0.9-src.tar.gz
+X-Packaged-By: Stephane Bortzmeyer <bortzmeyer at debian.org>
+X-Packaged-Date: Fri, 28 Aug 1998 16:09:48 +0200
+Original-Source-Location: http://www.clustal.org/download/current/clustalw-2.0.10-src.tar.gz
 
 X-Non-Free-Disclamer: This package is not part of the Debian operating system.
  The clustalw source and binary Debian packages are part of the "non-free" area

Added: trunk/packages/clustalw/trunk/debian/reference
===================================================================
--- trunk/packages/clustalw/trunk/debian/reference	                        (rev 0)
+++ trunk/packages/clustalw/trunk/debian/reference	2008-11-15 09:29:22 UTC (rev 2686)
@@ -0,0 +1,14 @@
+ at article{M.A.Larkin11012007,
+author = {Larkin, M.A. and Blackshields, G. and Brown, N.P. and Chenna, R. and McGettigan, P.A. and McWilliam, H. and Valentin, F. and Wallace, I.M. and Wilm, A. and Lopez, R. and Thompson, J.D. and Gibson, T.J. and Higgins, D.G.},
+title = {{Clustal W and Clustal X version 2.0}},
+journal = {Bioinformatics},
+volume = {23},
+number = {21},
+pages = {2947-2948},
+doi = {10.1093/bioinformatics/btm404},
+year = {2007},
+},
+URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/23/21/2947},
+eprint = {http://bioinformatics.oxfordjournals.org/cgi/reprint/23/21/2947.pdf}
+}
+


