[med-svn] r2734 - trunk/packages/ssake/trunk/debian

[tille at alioth.debian.org]

Author: tille
Date: 2008-11-24 15:30:19 +0000 (Mon, 24 Nov 2008)
New Revision: 2734

Modified:
   trunk/packages/ssake/trunk/debian/control
   trunk/packages/ssake/trunk/debian/rules
   trunk/packages/ssake/trunk/debian/ssake.README.Debian
   trunk/packages/ssake/trunk/debian/ssake.docs
   trunk/packages/ssake/trunk/debian/tqs.1
Log:
Provide /usr/bin/tqs and copy tools to /usr/share/ssake


Modified: trunk/packages/ssake/trunk/debian/control
===================================================================
--- trunk/packages/ssake/trunk/debian/control	2008-11-24 15:18:18 UTC (rev 2733)
+++ trunk/packages/ssake/trunk/debian/control	2008-11-24 15:30:19 UTC (rev 2734)
@@ -13,7 +13,7 @@
 
 Package: ssake
 Architecture: all
-Depends: ${shlibs:Depends}, ${misc:Depends}, ${perl:Depends}
+Depends: ${perl:Depends}, python
 Suggests: ssake-examples
 Description: assembling millions of very short DNA sequences
  SSAKE is a genomics application for assembling millions of very short

Modified: trunk/packages/ssake/trunk/debian/rules
===================================================================
--- trunk/packages/ssake/trunk/debian/rules	2008-11-24 15:18:18 UTC (rev 2733)
+++ trunk/packages/ssake/trunk/debian/rules	2008-11-24 15:30:19 UTC (rev 2734)
@@ -10,6 +10,7 @@
 
 install/$(pkg)::
 	cp -a SSAKE `pwd`/debian/$(pkg)/usr/bin/ssake
+	cp -a tools/TQS.py `pwd`/debian/$(pkg)/usr/bin/tqs
 
 install/$(examples)::
 	cp -a ssake_test/* `pwd`/debian/$(examples)/usr/share/doc/$(pkg)/examples

Modified: trunk/packages/ssake/trunk/debian/ssake.README.Debian
===================================================================
--- trunk/packages/ssake/trunk/debian/ssake.README.Debian	2008-11-24 15:18:18 UTC (rev 2733)
+++ trunk/packages/ssake/trunk/debian/ssake.README.Debian	2008-11-24 15:30:19 UTC (rev 2734)
@@ -4,11 +4,12 @@
 The original ssake tarball contains a directory tools which contains
 some older versions of ssake as well as
 
-    TQS.py
     makeFastaFileFromScaffolds.pl
+    nLength.pl
 
-The use of these scripts has to be clarified.  If you need these tools
-for your work just send an e-mail to the Debian package author (see below)
+The use of these scripts has to be clarified.  For the moment these
+are installed into /usr/share/ssake. If you need these tools at a more
+prominent place kust send an e-mail to the Debian package author (see below)
 to ask for inclusion into the package.
 
  -- Andreas Tille <tille at debian.org>  Mon, 24 Nov 2008 13:12:38 +0100

Modified: trunk/packages/ssake/trunk/debian/ssake.docs
===================================================================
--- trunk/packages/ssake/trunk/debian/ssake.docs	2008-11-24 15:18:18 UTC (rev 2733)
+++ trunk/packages/ssake/trunk/debian/ssake.docs	2008-11-24 15:30:19 UTC (rev 2734)
@@ -1 +1,2 @@
 SSAKE.readme
+tools/TQS.readme

Modified: trunk/packages/ssake/trunk/debian/tqs.1
===================================================================
--- trunk/packages/ssake/trunk/debian/tqs.1	2008-11-24 15:18:18 UTC (rev 2733)
+++ trunk/packages/ssake/trunk/debian/tqs.1	2008-11-24 15:30:19 UTC (rev 2734)
@@ -18,7 +18,7 @@
 .IP "\-l MER, \-\-length=MER               " 10
 Length of sequence reads (i.e. Number of sequencing cycles, default=36)
 .IP "\-t THRESHOLD, \-\-threshold=THRESHOLD" 10
-Base intensity threshold value (-40 to 40, default=5)
+Base intensity threshold value (\-40 to 40, default=5)
 .IP "\-d DIFF, \-\-difference=DIFF         " 10
 Base intensity difference between top intensity and second best (1 to 80, default=5)
 .IP "\-c CONSEC, \-\-consec=CONSEC         " 10