[med-svn] r2740 - trunk/packages/emboss/trunk/debian

[plessy at alioth.debian.org]

Author: plessy
Date: 2008-11-26 01:55:50 +0000 (Wed, 26 Nov 2008)
New Revision: 2740

Added:
   trunk/packages/emboss/trunk/debian/jemboss.dirs
Modified:
   trunk/packages/emboss/trunk/debian/changelog
   trunk/packages/emboss/trunk/debian/control
   trunk/packages/emboss/trunk/debian/rules
Log:
First steps to support jEMBOSS.


Modified: trunk/packages/emboss/trunk/debian/changelog
===================================================================
--- trunk/packages/emboss/trunk/debian/changelog	2008-11-25 18:14:54 UTC (rev 2739)
+++ trunk/packages/emboss/trunk/debian/changelog	2008-11-26 01:55:50 UTC (rev 2740)
@@ -1,3 +1,9 @@
+emboss (6.0.1-3) UNRELEASED; urgency=low
+
+  * jEMBOSS 
+
+ -- Charles Plessy <plessy at debian.org>  Wed, 26 Nov 2008 08:57:20 +0900
+
 emboss (6.0.1-2) experimental; urgency=low
 
   * New upstream patch (patch-1-1).

Modified: trunk/packages/emboss/trunk/debian/control
===================================================================
--- trunk/packages/emboss/trunk/debian/control	2008-11-25 18:14:54 UTC (rev 2739)
+++ trunk/packages/emboss/trunk/debian/control	2008-11-26 01:55:50 UTC (rev 2740)
@@ -4,7 +4,7 @@
 Maintainer: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
 DM-Upload-Allowed: yes
 Uploaders: Charles Plessy <plessy at debian.org>, Nelson A. de Oliveira <naoliv at debian.org>
-Build-Depends: debhelper (>= 7), quilt, libx11-dev, x11proto-core-dev, libgdchart-gd2-xpm-dev, zlib1g-dev, libpng12-dev, libpcre3-dev, antiword, sharutils, autotools-dev, tcsh | csh | c-shell
+Build-Depends: debhelper (>= 7), quilt, libx11-dev, x11proto-core-dev, libgdchart-gd2-xpm-dev, zlib1g-dev, libpng12-dev, libpcre3-dev, antiword, sharutils, autotools-dev, tcsh | csh | c-shell, openjdk-6-jdk
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/emboss/trunk/?rev=0&sc=0trunk
 Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/emboss/trunk/
 Standards-Version: 3.8.0
@@ -64,6 +64,13 @@
  This package is being emptied. For the moment it contains a eplplot, an EMBOSS
  fork of the plplot library.
 
+Package: jemboss
+Section: science
+Architecture: all
+Depends: ${shlibs:Depends}, ${misc:Depends}, openjdk-6-jre
+Description: jEMBOSS
+ Preliminary description for jEMBOSS
+
 Package: libajax6
 Section: libs
 Architecture: any

Added: trunk/packages/emboss/trunk/debian/jemboss.dirs
===================================================================
--- trunk/packages/emboss/trunk/debian/jemboss.dirs	                        (rev 0)
+++ trunk/packages/emboss/trunk/debian/jemboss.dirs	2008-11-26 01:55:50 UTC (rev 2740)
@@ -0,0 +1 @@
+/usr/bin

Modified: trunk/packages/emboss/trunk/debian/rules
===================================================================
--- trunk/packages/emboss/trunk/debian/rules	2008-11-25 18:14:54 UTC (rev 2739)
+++ trunk/packages/emboss/trunk/debian/rules	2008-11-26 01:55:50 UTC (rev 2740)
@@ -15,9 +15,8 @@
 	ln -sf /usr/share/misc/config.guess .
 	./configure \
 		--prefix=/usr \
-		#--with-java=/usr/lib/j2sdk1.3/include \
-		#--with-javaos=/usr/lib/j2sdk1.3/include/linux \
-		#--with-x \
+		--with-java=/usr/lib/jvm/java-6-openjdk/include \
+		--with-javaos=/usr/lib/jvm/java-6-openjdk/include/linux \
 
 include /usr/share/quilt/quilt.make
 
@@ -105,8 +104,7 @@
 	# Remove this file when the relicenced file becomes part of the upstream tarball.
 	uudecode -o $(CURDIR)/debian/emboss-doc/usr/share/EMBOSS/doc/manuals/EMBOSS_qg.pdf $(CURDIR)/debian/EMBOSS_qg_new.pdf.uu
 
-	### Java is disabled until it becomes understandable. ###
-	#$(MAKE) -C jemboss install prefix=$(CURDIR)/debian/emboss-java/usr
+	$(MAKE) -C jemboss install DESTDIR=$(CURDIR)/debian/jemboss
 	# dangling LICEN[CS]E FILE
 	#-rm -f $(CURDIR)/debian/emboss-java/usr/share/EMBOSS/jemboss/LICENSE