[med-svn] r2571 - in trunk/packages: . sequenceconverter.app sequenceconverter.app/trunk sequenceconverter.app/trunk/debian sequenceconverter.app/trunk/debian/patches
plessy at alioth.debian.org
plessy at alioth.debian.org
Mon Oct 13 08:06:42 UTC 2008
Author: plessy
Date: 2008-10-13 08:06:41 +0000 (Mon, 13 Oct 2008)
New Revision: 2571
Added:
trunk/packages/sequenceconverter.app/
trunk/packages/sequenceconverter.app/trunk/
trunk/packages/sequenceconverter.app/trunk/debian/SequenceConverter.1
trunk/packages/sequenceconverter.app/trunk/debian/SequenceConverter.desktop
Removed:
trunk/packages/sequenceconverter.app/trunk/debian/BioCocoa.1
trunk/packages/sequenceconverter.app/trunk/debian/BioCocoa.desktop
Modified:
trunk/packages/sequenceconverter.app/trunk/debian/changelog
trunk/packages/sequenceconverter.app/trunk/debian/control
trunk/packages/sequenceconverter.app/trunk/debian/lintian-override
trunk/packages/sequenceconverter.app/trunk/debian/manpages
trunk/packages/sequenceconverter.app/trunk/debian/menu
trunk/packages/sequenceconverter.app/trunk/debian/patches/01_plist.patch
trunk/packages/sequenceconverter.app/trunk/debian/patches/03_GNUmakefile.patch
trunk/packages/sequenceconverter.app/trunk/debian/rules
Log:
Renamed biococoa.app sequenceconverter.app.
Copied: trunk/packages/sequenceconverter.app/trunk (from rev 2570, trunk/packages/biococoa/trunk)
Property changes on: trunk/packages/sequenceconverter.app/trunk
___________________________________________________________________
Name: svn:mergeinfo
+
Deleted: trunk/packages/sequenceconverter.app/trunk/debian/BioCocoa.1
===================================================================
--- trunk/packages/biococoa/trunk/debian/BioCocoa.1 2008-10-12 06:52:23 UTC (rev 2570)
+++ trunk/packages/sequenceconverter.app/trunk/debian/BioCocoa.1 2008-10-13 08:06:41 UTC (rev 2571)
@@ -1,27 +0,0 @@
-.TH BIOCOCOA 1 "December 21, 2004"
-.SH NAME
-BioCocoa \- Sequence file format conversion
-.SH SYNOPSIS
-.B BioCocoa
-.SH DESCRIPTION
-This manual page documents briefly the
-.B BioCocoa
-command.
-This manual page was written for the Debian distribution
-because the original program does not have a manual page.
-.PP
-\fBBioCocoa\fP provides developers with the opportunity to add
-support for reading and writing BEAST, Clustal, EMBL, Fasta, GCG-MSF, GDE,
-Hennig86, NCBI, NEXUS, NONA, PDB, Phylip, PIR, Plain/Raw, Swiss-Prot and
-TNT files by writing only three lines of code. The framework is written in
-Cocoa (Objective-C).
-.SH OPTIONS
-These programs follow the usual GNU command line syntax, with long
-options starting with two dashes (`-').
-A summary of options is included below.
-.SH SEE ALSO
-.BR GNUstep (7).
-.br
-.SH AUTHOR
-This manual page was written by G\[:u]rkan Seng\[:u]n <gurkan at linuks.mine.nu>,
-for the Debian project (but may be used by others).
Deleted: trunk/packages/sequenceconverter.app/trunk/debian/BioCocoa.desktop
===================================================================
--- trunk/packages/biococoa/trunk/debian/BioCocoa.desktop 2008-10-12 06:52:23 UTC (rev 2570)
+++ trunk/packages/sequenceconverter.app/trunk/debian/BioCocoa.desktop 2008-10-13 08:06:41 UTC (rev 2571)
@@ -1,8 +0,0 @@
-[Desktop Entry]
-Type=Application
-Version=0.94
-Categories=Education;Science;Biology;
-Name=BioCocoa
-Comment=GNUstep BioCocoa
-Icon=/usr/lib/GNUstep/Applications/BioCocoa.app/Resources/biococoa.tiff
-Exec=BioCocoa
Copied: trunk/packages/sequenceconverter.app/trunk/debian/SequenceConverter.1 (from rev 2399, trunk/packages/biococoa/trunk/debian/SequenceConverter.1)
===================================================================
--- trunk/packages/sequenceconverter.app/trunk/debian/SequenceConverter.1 (rev 0)
+++ trunk/packages/sequenceconverter.app/trunk/debian/SequenceConverter.1 2008-10-13 08:06:41 UTC (rev 2571)
@@ -0,0 +1,27 @@
+.TH SEQUENCECONVERTER 1 "December 21, 2004"
+.SH NAME
+SequenceConverter \- Sequence file format conversion
+.SH SYNOPSIS
+.B SequenceConverter
+.SH DESCRIPTION
+This manual page documents briefly the
+.B SequenceConverter
+command.
+This manual page was written for the Debian distribution
+because the original program does not have a manual page.
+.PP
+\fBSequenceConverter\fP provides developers with the opportunity to add
+support for reading and writing BEAST, Clustal, EMBL, Fasta, GCG-MSF, GDE,
+Hennig86, NCBI, NEXUS, NONA, PDB, Phylip, PIR, Plain/Raw, Swiss-Prot and
+TNT files by writing only three lines of code. The framework is written in
+Cocoa (Objective-C).
+.SH OPTIONS
+These programs follow the usual GNU command line syntax, with long
+options starting with two dashes (`-').
+A summary of options is included below.
+.SH SEE ALSO
+.BR GNUstep (7).
+.br
+.SH AUTHOR
+This manual page was written by G\[:u]rkan Seng\[:u]n <gurkan at linuks.mine.nu>,
+for the Debian project (but may be used by others).
Copied: trunk/packages/sequenceconverter.app/trunk/debian/SequenceConverter.desktop (from rev 2399, trunk/packages/biococoa/trunk/debian/SequenceConverter.desktop)
===================================================================
--- trunk/packages/sequenceconverter.app/trunk/debian/SequenceConverter.desktop (rev 0)
+++ trunk/packages/sequenceconverter.app/trunk/debian/SequenceConverter.desktop 2008-10-13 08:06:41 UTC (rev 2571)
@@ -0,0 +1,8 @@
+[Desktop Entry]
+Type=Application
+Version=0.94
+Categories=Education;Science;Biology;
+Name=SequenceConverter
+Comment=GNUstep SequenceConverter
+Icon=/usr/lib/GNUstep/Applications/SequenceConverter.app/Resources/biococoa.tiff
+Exec=SequenceConverter
Modified: trunk/packages/sequenceconverter.app/trunk/debian/changelog
===================================================================
--- trunk/packages/biococoa/trunk/debian/changelog 2008-10-12 06:52:23 UTC (rev 2570)
+++ trunk/packages/sequenceconverter.app/trunk/debian/changelog 2008-10-13 08:06:41 UTC (rev 2571)
@@ -1,11 +1,19 @@
+biococoa.app (1.6.0-9) UNRELEASED; urgency=low
+
+ * Source and binary packages renamed sequenceconverter.app to avoid
+ confusions with the `biococoa' package containing the BioCocoa libraries.
+
+ -- Charles Plessy <plessy at debian.org> Mon, 13 Oct 2008 17:03:58 +0900
+
biococoa.app (1.6.0-8) unstable; urgency=low
- * Changed the description of the binary package `biococoa.app' to reflect
- that this package does not contain the biococoa libraries, but the
- SequenceConverter demo application.
+ * Changed the name of the binary package `biococoa.app' to
+ `sequence-converter.app', and updated its description to match its
+ contents: this package does not contain the biococoa libraries, but
+ the SequenceConverter demo application. (Closes: #493051)
* Added myself to the Uploaders.
- -- Charles Plessy <plessy at debian.org> Fri, 08 Aug 2008 13:45:58 +0900
+ -- Charles Plessy <plessy at debian.org> Thu, 07 Aug 2008 23:23:14 +0900
biococoa.app (1.6.0-7) unstable; urgency=low
Modified: trunk/packages/sequenceconverter.app/trunk/debian/control
===================================================================
--- trunk/packages/biococoa/trunk/debian/control 2008-10-12 06:52:23 UTC (rev 2570)
+++ trunk/packages/sequenceconverter.app/trunk/debian/control 2008-10-13 08:06:41 UTC (rev 2571)
@@ -1,4 +1,4 @@
-Source: biococoa.app
+Source: sequenceconverter.app
Section: science
Priority: optional
Maintainer: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
@@ -7,21 +7,24 @@
Build-Depends: debhelper (>= 5), gnustep-make, libgnustep-gui-dev (>= 0.12.0), quilt
Standards-Version: 3.7.3
Homepage: http://bioinformatics.org/biococoa/
-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/biococoa/trunk/?rev=0&sc=0
-Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/biococoa/trunk/
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/sequenceconverter/trunk/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/sequenceconverter/trunk/
-Package: biococoa.app
+Package: sequenceconverter.app
Architecture: any
Depends: ${shlibs:Depends}
+Conflicts: biococoa.app ( < 1.6.0-8 )
+Replaces: biococoa.app ( < 1.6.0-8 )
+Provides: biococoa.app
Description: biological sequence file format conversion applet for GNUstep
Demo application to demonstrate the possibilities of the BioCocoa framework.
.
- This package contains a GNUstep applet to convert between sequence file
- formats. The BioCocoa framework provides developers with the opportunity to
- add support for reading and writing BEAST, Clustal, EMBL, Fasta, GCG-MSF, GDE,
- Hennig86, NCBI, NEXUS, NONA, PDB, Phylip, PIR, Plain/Raw, Swiss-Prot and TNT
- files by writing only three lines of code. The framework is written in Cocoa
- (Objective-C).
+ SequenceConverter is a GNUstep applet to convert between sequence file formats.
+ The BioCocoa framework provides developers with the opportunity to add
+ support for reading and writing BEAST, Clustal, EMBL, Fasta, GCG-MSF, GDE,
+ Hennig86, NCBI, NEXUS, NONA, PDB, Phylip, PIR, Plain/Raw, Swiss-Prot and
+ TNT files by writing only three lines of code. The framework is written in
+ Cocoa (Objective-C).
.
Version 1.6 is the last upstream version that works with GNUstep. If
newer versions are needed to work under Linux try to convince upstream to
Modified: trunk/packages/sequenceconverter.app/trunk/debian/lintian-override
===================================================================
--- trunk/packages/biococoa/trunk/debian/lintian-override 2008-10-12 06:52:23 UTC (rev 2570)
+++ trunk/packages/sequenceconverter.app/trunk/debian/lintian-override 2008-10-13 08:06:41 UTC (rev 2571)
@@ -1 +1 @@
-biococoa.app: image-file-in-usr-lib
+sequence-converter.app: image-file-in-usr-lib
Modified: trunk/packages/sequenceconverter.app/trunk/debian/manpages
===================================================================
--- trunk/packages/biococoa/trunk/debian/manpages 2008-10-12 06:52:23 UTC (rev 2570)
+++ trunk/packages/sequenceconverter.app/trunk/debian/manpages 2008-10-13 08:06:41 UTC (rev 2571)
@@ -1 +1 @@
-debian/BioCocoa.1
+debian/SequenceConverter.1
Modified: trunk/packages/sequenceconverter.app/trunk/debian/menu
===================================================================
--- trunk/packages/biococoa/trunk/debian/menu 2008-10-12 06:52:23 UTC (rev 2570)
+++ trunk/packages/sequenceconverter.app/trunk/debian/menu 2008-10-13 08:06:41 UTC (rev 2571)
@@ -1,2 +1,2 @@
-?package(biococoa.app):needs="X11" section="Applications/Science/Biology"\
- title="BioCocoa" command="/usr/bin/BioCocoa"
+?package(sequence-converter.app):needs="X11" section="Applications/Science/Biology"\
+ title="SequenceConverter" command="/usr/bin/SequenceConverter"
Modified: trunk/packages/sequenceconverter.app/trunk/debian/patches/01_plist.patch
===================================================================
--- trunk/packages/biococoa/trunk/debian/patches/01_plist.patch 2008-10-12 06:52:23 UTC (rev 2570)
+++ trunk/packages/sequenceconverter.app/trunk/debian/patches/01_plist.patch 2008-10-13 08:06:41 UTC (rev 2571)
@@ -1,12 +1,13 @@
---- biococoa.orig/BioCocoaInfo.plist
-+++ biococoa/BioCocoaInfo.plist
+Index: biococoa.app-1.6.0/BioCocoaInfo.plist
+===================================================================
+--- biococoa.app-1.6.0.orig/BioCocoaInfo.plist
++++ biococoa.app-1.6.0/BioCocoaInfo.plist
@@ -1,7 +1,7 @@
{
- ApplicationName = BioCocoa
-- ApplicationDescription = "GNUstep BioCocoaDemo";
++ ApplicationName = "SequenceConverter";
+ ApplicationDescription = "GNUstep BioCocoaDemo";
- ApplicationRelease = BioCocoa 1.6";
-+ ApplicationName = "BioCocoa";
-+ ApplicationDescription = "GNUstep BioCocoa";
+ ApplicationRelease = "BioCocoa 1.6";
FullVersionID = "1.6.0 Nov 2004";
Authors = ("Peter Schols <peter.schols at bio.kuleuven.ac.be>");
Modified: trunk/packages/sequenceconverter.app/trunk/debian/patches/03_GNUmakefile.patch
===================================================================
--- trunk/packages/biococoa/trunk/debian/patches/03_GNUmakefile.patch 2008-10-12 06:52:23 UTC (rev 2570)
+++ trunk/packages/sequenceconverter.app/trunk/debian/patches/03_GNUmakefile.patch 2008-10-13 08:06:41 UTC (rev 2571)
@@ -1,5 +1,7 @@
---- biococoa.orig/GNUmakefile
-+++ biococoa/GNUmakefile
+Index: biococoa.app-1.6.0/GNUmakefile
+===================================================================
+--- biococoa.app-1.6.0.orig/GNUmakefile
++++ biococoa.app-1.6.0/GNUmakefile
@@ -1,12 +1,14 @@
# GNUmakefile: makefile for Biococoa
#
@@ -16,12 +18,20 @@
# the Free Software Foundation; either version 2 of the License, or
# (at your option) any later version.
#
-@@ -25,7 +27,7 @@
- BioCocoa_HEADERS = Controller.h Interface.h BCReader.h BCCreator.h StringAdditions.h
- BioCocoa_OBJC_FILES = main.m Controller.m Interface.m BCReader.m BCCreator.m StringAdditions.m
- BioCocoa_APPLICATION_ICON = biococoa.tiff
+@@ -21,11 +23,11 @@
+
+ include $(GNUSTEP_MAKEFILES)/common.make
+
+-APP_NAME = BioCocoa
+-BioCocoa_HEADERS = Controller.h Interface.h BCReader.h BCCreator.h StringAdditions.h
+-BioCocoa_OBJC_FILES = main.m Controller.m Interface.m BCReader.m BCCreator.m StringAdditions.m
+-BioCocoa_APPLICATION_ICON = biococoa.tiff
-BioCocoa_RESOURCE_FILES = biococoa.tiff
-+BioCocoa_RESOURCE_FILES = biococoa.tiff BioCocoaInfo.plist
++APP_NAME = SequenceConverter
++SequenceConverter_HEADERS = Controller.h Interface.h BCReader.h BCCreator.h StringAdditions.h
++SequenceConverter_OBJC_FILES = main.m Controller.m Interface.m BCReader.m BCCreator.m StringAdditions.m
++SequenceConverter_APPLICATION_ICON = biococoa.tiff
++SequenceConverter_RESOURCE_FILES = biococoa.tiff SequenceConverterInfo.plist
include $(GNUSTEP_MAKEFILES)/application.make
Modified: trunk/packages/sequenceconverter.app/trunk/debian/rules
===================================================================
--- trunk/packages/biococoa/trunk/debian/rules 2008-10-12 06:52:23 UTC (rev 2570)
+++ trunk/packages/sequenceconverter.app/trunk/debian/rules 2008-10-13 08:06:41 UTC (rev 2571)
@@ -11,6 +11,7 @@
build-stamp:
dh_testdir
+ cp BioCocoaInfo.plist SequenceConverterInfo.plist
gs_make
touch build-stamp
@@ -19,15 +20,15 @@
dh_testroot
rm -f build-stamp
gs_make distclean clean
- dh_clean
+ dh_clean SequenceConverterInfo.plist
install: build
dh_testdir
dh_testroot
dh_clean -k
dh_installdirs
- gs_make install DESTDIR=$(CURDIR)/debian/biococoa.app GNUSTEP_INSTALLATION_DOMAIN=SYSTEM
- find `pwd`/debian/biococoa.app -name "*.plist" -exec chmod -x {} \;
+ gs_make install DESTDIR=$(CURDIR)/debian/sequence-converter.app GNUSTEP_INSTALLATION_DOMAIN=SYSTEM
+ find `pwd`/debian/sequence-converter.app -name "*.plist" -exec chmod -x {} \;
dh_install debian/*.desktop usr/share/applications/
rm $(CURDIR)/debian/*.app/usr/lib/GNUstep/Applications/*.app/Resources/*.desktop
@@ -40,7 +41,7 @@
dh_testdir
dh_testroot
dh_installchangelogs
- install -m 644 debian/lintian-override $(CURDIR)/debian/biococoa.app/usr/share/lintian/overrides/biococoa.app
+ install -m 644 debian/lintian-override $(CURDIR)/debian/sequence-converter.app/usr/share/lintian/overrides/sequence-converter.app
dh_installdocs
dh_installmenu
dh_installman
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